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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-007048

Length: 1,227

Sequence [FASTA format sequence]
GGCGTAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX
AGCA ACAGCTGAGA
CCACCTTGAG AAGAGCATGG TCCCAGGCCG AGTTCTGATG TGGGGGGCCC TCGCCCTGAC
CGCCGTGATG AGCGCCTGTG GAGGTGAAGA CATTGCGGAC CCCGACCTAG CCGACCATGT
TGCCTCCTAT GGCTTAAATG TCTACCAGTC TTACGGTTCC AGCGGCTATT ATACCCATGA
ATTTGATGGT GACGAGCAAT TCTACGTGGA CCTGGAGAAG AAGGAGACTG TCTGGCAGCT
GCCTCTGTTT AGCAAATTTA CAAGTTTTGA CCCGCAGGGT GCACTGAGGA ACATAGCTGT
GGGAAAACTT ACCTTGAACA TCCTGACTAA ACGCTCCAAC AACACAGCGG CTGTCAATAA
GGTTCCTGAG GTGACTGTGT TTTCCAAGTC TCCAGTGATA CTGGGTCAGC CCAACACCCT
CATCTGTCAT GTGGACAGCA TCTTTCCTCC TGTGATCAAC ATCGCGTGGT TGAAGAACGG
GCACTCTGTC ACAGAAGGTT TTTCTGAGAC CAGCTTCCTC TCCAGAAATG ATCATTCCTT
CCTCAAGATC AGTTATCTCA CCTTCCTCCC TTCTGATGAT GATTTTTATG ACTGCAAAGT
GGAGCACTGG GGCCTGGATA AGCCACTTCT GAAACACTGG GAACCTGAGA TTCCAGCCCC
CATGTCAGAG CTGACAGAGA CGGTGGTCTG CGCCCTGNGG TTGATCGTGG GCCTTGTGGG
CATCGTGGTG GGTACTGTCC TCCTTATTCG AGGCCTGCGC TCAGGTGGTC TCTCTAGACA
CCAAGGGTCC TTGTGAGTCA CACTCCAGAA GAAGAGGTGC ACTGCCCGCC TACAAGAGCT
GAAGAGTGAA TGTGCTCCAC GACCTAGAAC TATTTTTCTG CCAAATTCNT CATAATACTT
TCTCTCTCCT ACTTTCCTCT TCCCACCTCT TCTCCTGGAA CTTAAAGGTG CTGTGTCACT
CTCAAAATTC ATTTGCCCCT TGGAAATCCT CCTCCTGAAC CTTCTAGGGT CTTTTTCTTT
TTTCCCAGTT TGTTTCCTTG TTTATGGGGA TTCTCTGAAA AAATCCCCCC CCCCGGCTTA
TCTTGATTTC CCCCCCGGGG ACCCCCCAAA AACATAAAAT TTTTAAACTG GGGAAAAAAA
CAAATAAATC TTCCCCTTTT TTTTTGGGGG GTTTTTTTTT TTTTTTCCCC CTTAAAAAAA
AAAAAAAAAA AAA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)362e-100O
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)362e-100O
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)362e-100O
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)362e-100O
Contig/Assembly ProteinHLA-DQA2major histocompatibility complex, class II, DQ alpha 2361e-100O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 13516e-97O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 13425e-94O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 13425e-94O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 13425e-94O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 13425e-94O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Aahistocompatibility 2, class II antigen A, alpha3141e-85O
Contig/Assembly ProteinH2-Oahistocompatibility 2, O region alpha locus2265e-59O
Contig/Assembly ProteinH2-Eahistocompatibility 2, class II antigen E alpha2227e-58O
Contig/Assembly ProteinH2-DMahistocompatibility 2, class II, locus DMa79.37e-15O
Contig/Assembly ProteinB2mbeta-2 microglobulin70.15e-12O
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus67.82e-11O
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 163.54e-10O
Contig/Assembly ProteinH2-DMb1histocompatibility 2, class II, locus Mb162.49e-10O
Contig/Assembly ProteinH2-DMb2histocompatibility 2, class II, locus Mb2621e-09O
Contig/Assembly ProteinH2-Eb1histocompatibility 2, class II antigen E beta60.15e-09O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly Proteindqa1MHC class II DLA DQalpha chain3549e-98O
Contig/Assembly ProteinLOC474869similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)2287e-60O
Contig/Assembly ProteinDLA-DRA1MHC class II DR alpha chain2264e-59O
Contig/Assembly ProteinLOC474869similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)1003e-21O
Contig/Assembly ProteinHLA-DMAmajor histocompatibility complex, class II, DM alpha71.22e-12
Contig/Assembly ProteinLOC478284similar to beta-2-microglobulin precursor674e-11O
Contig/Assembly ProteinLOC478284similar to beta-2-microglobulin precursor674e-11O
Contig/Assembly ProteinDLA-DQB1MHC class II DLA-DQ beta chain b1 domain65.51e-10
Contig/Assembly ProteinHLA-DMAmajor histocompatibility complex, class II, DM alpha65.51e-10O
Contig/Assembly ProteinDLA-DRB1MHC class II DLA DRB1 beta chain64.32e-10O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBOLA-DQA1histocompatibility complex, class II, DQ alpha, type 13593e-99O
Contig/Assembly ProteinBOLA-DQAmajor histocompatibility complex, class II, DQ alpha3584e-99O
Contig/Assembly ProteinBOLA-DQA2major histocompatibility complex, class II, DQ alpha 13218e-88O
Contig/Assembly ProteinBOLA-DYAmajor histocompatibility complex, class II, DY alpha2956e-80O
Contig/Assembly ProteinLOC525727similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)2348e-62O
Contig/Assembly ProteinLOC525727similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)2324e-61O
Contig/Assembly ProteinBOLA-DRAmajor histocompatibility complex, class II, DR alpha2188e-57O
Contig/Assembly ProteinB2Mbeta-2-microglobulin72.47e-13O
Contig/Assembly ProteinBOLA-DMAmajor histocompatibility complex, class II, DM alpha-chain, expressed62.47e-10O
Contig/Assembly ProteinBOLA-DQBmajor histocompatibility complex, class II, DQ beta61.61e-09


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinB2Mbeta 2-microglobulin72.42e-14O
Contig/Assembly ProteinSLA-DMASLA-DM alpha chain723e-14O


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
AMP010094D09AMP01_0094_D09.bBW961943