[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-007048
Length:
1,227
Sequence:
[FASTA format sequence]
GGCGTAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXAGCA ACAGCTGAGA
CCACCTTGAG AAGAGCATGG TCCCAGGCCG AGTTCTGATG TGGGGGGCCC TCGCCCTGAC
CGCCGTGATG AGCGCCTGTG GAGGTGAAGA CATTGCGGAC CCCGACCTAG CCGACCATGT
TGCCTCCTAT GGCTTAAATG TCTACCAGTC TTACGGTTCC AGCGGCTATT ATACCCATGA
ATTTGATGGT GACGAGCAAT TCTACGTGGA CCTGGAGAAG AAGGAGACTG TCTGGCAGCT
GCCTCTGTTT AGCAAATTTA CAAGTTTTGA CCCGCAGGGT GCACTGAGGA ACATAGCTGT
GGGAAAACTT ACCTTGAACA TCCTGACTAA ACGCTCCAAC AACACAGCGG CTGTCAATAA
GGTTCCTGAG GTGACTGTGT TTTCCAAGTC TCCAGTGATA CTGGGTCAGC CCAACACCCT
CATCTGTCAT GTGGACAGCA TCTTTCCTCC TGTGATCAAC ATCGCGTGGT TGAAGAACGG
GCACTCTGTC ACAGAAGGTT TTTCTGAGAC CAGCTTCCTC TCCAGAAATG ATCATTCCTT
CCTCAAGATC AGTTATCTCA CCTTCCTCCC TTCTGATGAT GATTTTTATG ACTGCAAAGT
GGAGCACTGG GGCCTGGATA AGCCACTTCT GAAACACTGG GAACCTGAGA TTCCAGCCCC
CATGTCAGAG CTGACAGAGA CGGTGGTCTG CGCCCTGNGG TTGATCGTGG GCCTTGTGGG
CATCGTGGTG GGTACTGTCC TCCTTATTCG AGGCCTGCGC TCAGGTGGTC TCTCTAGACA
CCAAGGGTCC TTGTGAGTCA CACTCCAGAA GAAGAGGTGC ACTGCCCGCC TACAAGAGCT
GAAGAGTGAA TGTGCTCCAC GACCTAGAAC TATTTTTCTG CCAAATTCNT CATAATACTT
TCTCTCTCCT ACTTTCCTCT TCCCACCTCT TCTCCTGGAA CTTAAAGGTG CTGTGTCACT
CTCAAAATTC ATTTGCCCCT TGGAAATCCT CCTCCTGAAC CTTCTAGGGT CTTTTTCTTT
TTTCCCAGTT TGTTTCCTTG TTTATGGGGA TTCTCTGAAA AAATCCCCCC CCCCGGCTTA
TCTTGATTTC CCCCCCGGGG ACCCCCCAAA AACATAAAAT TTTTAAACTG GGGAAAAAAA
CAAATAAATC TTCCCCTTTT TTTTTGGGGG GTTTTTTTTT TTTTTTCCCC CTTAAAAAAA
AAAAAAAAAA AAA
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 362 | e-100 | O | ||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 362 | e-100 | O | ||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 362 | e-100 | O | ||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 362 | e-100 | O | ||
HLA-DQA2 | major histocompatibility complex, class II, DQ alpha 2 | 361 | e-100 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 351 | 6e-97 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 342 | 5e-94 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 342 | 5e-94 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 342 | 5e-94 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 342 | 5e-94 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
H2-Aa | histocompatibility 2, class II antigen A, alpha | 314 | 1e-85 | O | ||
H2-Oa | histocompatibility 2, O region alpha locus | 226 | 5e-59 | O | ||
H2-Ea | histocompatibility 2, class II antigen E alpha | 222 | 7e-58 | O | ||
H2-DMa | histocompatibility 2, class II, locus DMa | 79.3 | 7e-15 | O | ||
B2m | beta-2 microglobulin | 70.1 | 5e-12 | O | ||
H2-Ob | histocompatibility 2, O region beta locus | 67.8 | 2e-11 | O | ||
H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 | 63.5 | 4e-10 | O | ||
H2-DMb1 | histocompatibility 2, class II, locus Mb1 | 62.4 | 9e-10 | O | ||
H2-DMb2 | histocompatibility 2, class II, locus Mb2 | 62 | 1e-09 | O | ||
H2-Eb1 | histocompatibility 2, class II antigen E beta | 60.1 | 5e-09 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
dqa1 | MHC class II DLA DQalpha chain | 354 | 9e-98 | O | ||
LOC474869 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 228 | 7e-60 | O | ||
DLA-DRA1 | MHC class II DR alpha chain | 226 | 4e-59 | O | ||
LOC474869 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 100 | 3e-21 | O | ||
HLA-DMA | major histocompatibility complex, class II, DM alpha | 71.2 | 2e-12 | |||
LOC478284 | similar to beta-2-microglobulin precursor | 67 | 4e-11 | O | ||
LOC478284 | similar to beta-2-microglobulin precursor | 67 | 4e-11 | O | ||
DLA-DQB1 | MHC class II DLA-DQ beta chain b1 domain | 65.5 | 1e-10 | |||
HLA-DMA | major histocompatibility complex, class II, DM alpha | 65.5 | 1e-10 | O | ||
DLA-DRB1 | MHC class II DLA DRB1 beta chain | 64.3 | 2e-10 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
BOLA-DQA1 | histocompatibility complex, class II, DQ alpha, type 1 | 359 | 3e-99 | O | ||
BOLA-DQA | major histocompatibility complex, class II, DQ alpha | 358 | 4e-99 | O | ||
BOLA-DQA2 | major histocompatibility complex, class II, DQ alpha 1 | 321 | 8e-88 | O | ||
BOLA-DYA | major histocompatibility complex, class II, DY alpha | 295 | 6e-80 | O | ||
LOC525727 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 234 | 8e-62 | O | ||
LOC525727 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 232 | 4e-61 | O | ||
BOLA-DRA | major histocompatibility complex, class II, DR alpha | 218 | 8e-57 | O | ||
B2M | beta-2-microglobulin | 72.4 | 7e-13 | O | ||
BOLA-DMA | major histocompatibility complex, class II, DM alpha-chain, expressed | 62.4 | 7e-10 | O | ||
BOLA-DQB | major histocompatibility complex, class II, DQ beta | 61.6 | 1e-09 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
B2M | beta 2-microglobulin | 72.4 | 2e-14 | O | ||
SLA-DMA | SLA-DM alpha chain | 72 | 3e-14 | O |
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