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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-010805

Length: 1,069

Sequence:  [FASTA format sequence]
NNNNNCGATA CATXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX TTGCAAGTCG GCGAAAGCGG
CGGGAAGTTC GTACTGGGCA GAAGGCGACC GGTCTGCGGT TCCGGGGAGA ATGCCTCGTG
TAAAAGCAGC TCAAGCTGGA AGACAGGGCC CTGCGAAGAG ACGTCTTGCA GAACATTTTG
CAGCTGGGGA GATAATCACT GACATGACAA AAAAGGAATG GAAACTAGGA TCGCCCATTG
GCCAAGGTGG CTTTGGTTGT ATATATCTCG CTGATATGAA TTCTTCAAAA TCAGTGGGCA
GCGATGCACC CTGTGTTGTG AAAGTGGAAC CCAGTGACAA CGGACCTCTT TTTACTGAAT
TGAAGTTCTA CCAGCGAGCT GCCAAACCAG AGCAAATTCA GAAATGGATT CGTGCCCATA
AACTGAAGTA CCTGGGTGTT CCTAAGTACT GGGGGTCTGG TCTACATGAT AAAAATGGGA
AAAGTTACAG ATTTATGATA ATGGATCGCT TTGGGAGTGA CCTTCAGAAA ATATATGAAG
CAAATGCCAA AAGGTTTTCC CGGAAAACGG TCTTGCAGCT AAGCTTAAGA ATTCTGGATA
TCCTGGAATA TATTCACGAG CACGAGTATG TACACGGCGA TATCAAGGCC TCAAATCTTC
TGCTCAGCTA TAAGAATCCT GACCAGGTGT ACTTGGTAGA CTATGGCCTT GCTTATCGCT
ACTGCCCAGA AGGAATTCAT AAAGAATACA AAGAAGACCC CAAAAGATGT CACGATGGCA
CCATTGAGTT CACCAGCATC GACGCGCACA ACGGTGTGGG CCCATCACGA CGCGGTGATT
TGGAAATCCT NNNGGTATGC ATGGTCCAGT GGCTTAGTGG CCATCTTCCT TGGGGAGATA
NTTNGAAGAT CCCTACTATG TTAGAGATTC CAAATTAGAT ACAGAGAAAT ATTGCAGGTT
TGATGGACNA AATGTTTCCT GAGNNAAACA GCCAGATGAA ATGCTAAGTA CATGGAAACA
GTGAAATACT GGAATATGCT GAGAAACTTC TTTTCAAAAG TACGAAAGAT CTTTTGCAGG
ACTGAAATCC TTTGAATTAA GATAATGCCA CCTGAACCTG GGCCCCTGGA AAAAGGAATT
TTAAAGGAAA ACCTTTCCAA AAAAAAAAAA ATTGGGAGAC CCGGATTTCC TTAAAAAGGC
CGCCCTAACC CGCAAAAAGC CCCAACCTTC AAACAAAAGA ACAAAAAATA AAGGGACAGT
TGTTTTTCTC TTTTTTTT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		VRK1	vaccinia related kinase 1	533	e-151	O
		VRK2	vaccinia related kinase 2	308	4e-84	O
		VRK3	vaccinia related kinase 3	189	3e-48
		VRK3	vaccinia related kinase 3	188	8e-48
		CSNK1E	casein kinase 1, epsilon	110	2e-24	O
		CSNK1E	casein kinase 1, epsilon	110	2e-24	O
		CSNK1D	casein kinase 1, delta	105	6e-23	O
		CSNK1D	casein kinase 1, delta	105	6e-23	O
		CSNK1A1	casein kinase 1, alpha 1	99	6e-21	O
		CSNK1G3	casein kinase 1, gamma 3	94.4	1e-19	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Vrk1	vaccinia related kinase 1	532	e-151	O
		Vrk1	vaccinia related kinase 1	532	e-151	O
		Vrk1	vaccinia related kinase 1	532	e-151	O
		Vrk2	vaccinia related kinase 2	306	2e-83	O
		Vrk3	vaccinia related kinase 3	190	2e-48
		Csnk1e	casein kinase 1, epsilon	110	3e-24	O
		Csnk1d	casein kinase 1, delta	105	8e-23	O
		Csnk1d	casein kinase 1, delta	105	8e-23	O
		Csnk1a1	casein kinase 1, alpha 1	99	8e-21	O
		Csnk1g2	casein kinase 1, gamma 2	95.9	6e-20	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC490848	similar to vaccinia related kinase 1	559	e-159	O
		LOC474605	similar to Serine/threonine-protein kinase VRK2 (Vaccinia-related kinase 2)	304	8e-83
		LOC484367	similar to Serine/threonine-protein kinase VRK3 (Vaccinia-related kinase 3)	176	5e-44
		LOC484367	similar to Serine/threonine-protein kinase VRK3 (Vaccinia-related kinase 3)	175	8e-44
		LOC474510	similar to casein kinase 1 epsilon	110	2e-24	O
		LOC474510	similar to casein kinase 1 epsilon	110	2e-24	O
		LOC474510	similar to casein kinase 1 epsilon	110	2e-24	O
		LOC474510	similar to casein kinase 1 epsilon	110	2e-24	O
		LOC479331	similar to casein kinase 1, alpha 1 isoform 1	99	7e-21	O
		LOC479331	similar to casein kinase 1, alpha 1 isoform 1	99	7e-21	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		VRK1	vaccinia related kinase 1	551	e-157	O
		LOC523902	similar to Serine/threonine-protein kinase VRK2 (Vaccinia-related kinase 2)	202	4e-52
		MGC133825	similar to Serine/threonine-protein kinase VRK3 (Vaccinia-related kinase 3)	179	4e-45
		MGC133825	similar to Serine/threonine-protein kinase VRK3 (Vaccinia-related kinase 3)	179	4e-45
		MGC133825	similar to Serine/threonine-protein kinase VRK3 (Vaccinia-related kinase 3)	178	7e-45	O
		LOC613515	similar to casein kinase 1, alpha 1	113	3e-25	O
		LOC523542	similar to Casein kinase I, delta isoform (CKI-delta)	105	6e-23	O
		LOC523542	similar to Casein kinase I, delta isoform (CKI-delta)	105	6e-23	O
		LOC523542	similar to Casein kinase I, delta isoform (CKI-delta)	105	6e-23	O
		LOC523542	similar to Casein kinase I, delta isoform (CKI-delta)	105	6e-23	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		STK6	serine/threonine kinase 6	51.6	3e-08