[Help]

[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-014218

Length: 1,073

Sequence:  [FASTA format sequence]
NNNNGGCTGA ACAXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXCA
CTGTCCTCTC CTGTTCTCCA GCATGTTGCA TCTGTGTTTC TCCAGAGGCT TCTGGGTGGC
AGCTCTGACC ATGATGCTGG TGGTGCTGAG CCCTCCCTTG GCTTTGGCCA GGGACACCCC
ACCGCATTTC TTGTTTCTGG GGAAGGCTGA GTGTCATTTC TTCAACGGGA CGGAGCGGGT
GCGGTTGCTG GACAGATACT TCTATAACGG AGATGAGTAC GTGCGCTTCG ACAGCGACGT
GGGCGAGTTC CGGGAAGTGA CCGAATTTGG GCGGCCTTCA GCCAAGTACT GGAACAGCCA
GAAGGACTTC ATGGAGCAGA AGCGGGCGGA GGTGGACACG GTGTGCAGAC ACAACTACGA
GATCTCAGAG ACCTTCCTCG TGCCGCGGCG AGCTGAGCCC AGAGTGACGG TGTACCCTGC
AAAGACCCAG CCCCTGCAGC ACCACAACCT CCTGGTCTGC TCTGTGACCG GGTTCTACCC
AGGCCATGTG GAGGTCAGGT GGTTCCGGAA TGGCCAGGAA GAAGTGGCGG GGGTGGTCTC
CACAGGCCTG ATCCCTAATG GAGACTGGAC CTTCCAGACC ATGGTGATGC TTGAAACGGT
TCCTCAGAGT GGAGAGGTCT ACACCTGCCG AGTGGAGCAC CCCAGCCTGA CGAGCCCCGT
CACAGTGGAA TGGAGTGAGA GGCTTTCTGA CTCTCTAGTC CCTCAGGCAC CAAGGAGGGG
ATGTGCTTGC CCCTGAGTGT CAGGTGTCTC CTCTCCTCTC AGCTTGTGTC CACTTGCTGC
CTGTTCTCCT GTCCTTCAGC TGAGGTGACG GGGGAGCCCT GTGACGCCCT GTGCTAGAAA
TGCTCTGATG GGTTACAGAC ACCCTGTGAT AGTTTCTCCC AACACCGATG CCCCCCGGGG
AGGTAATTCT ACCTGACAGG CAGCATGGAG GATGTCCCTG TTTTCAGCCG TGTCTCAAGT
CATGGTCGCC CTGTGGCCCC TGGCAAGCGT CCCCTGTGTC TGACTGGGCT CGTGCTTCTG
ACACTCTTGC TCCGGGTTGG TCCTGTGATC TGAGCATCNA TTCGGCCTTG GTGGGCTCCG
CCCCAACCTG GGCATGGGCT CCCGCACTTC CACCCCGCCG GGATCCCGAA TTGGAAAGCT
TCCGGGGGGA AACCGGTTTT CCCAGGCCAT TTGCTCCCCC CCTACCCCGG TTCTGGGCCT
GGAAAGAAAC AAAAGGGCCT CTTACCCTCG GATCTTCACA AATTGGGGCC GTGGCCGAAC
CCCCGGGAAA CCACTTAAAA ACCCTTCTCG AGGGAAACCG CGAAAACTCC GGCTTTTGAA
ACGGGCTTTT TCCCCCGGGA AAGAAAAGAG AAGGTTCTCA ACACACCCCT CGAGGAAA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

---

Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		LOC649143	similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)	347	1e-95	O
		HLA-DRB1	major histocompatibility complex, class II, DR beta 1	339	3e-93	O
		LOC649143	similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)	334	9e-92	O
		HLA-DRB3	major histocompatibility complex, class II, DR beta 3	332	4e-91	O
		HLA-DRB5	major histocompatibility complex, class II, DR beta 5	328	4e-90	O
		HLA-DRB4	major histocompatibility complex, class II, DR beta 4	326	2e-89	O
		LOC649143	similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)	305	4e-83
		HLA-DQB2	major histocompatibility complex, class II, DQ beta 2	282	4e-76	O
		HLA-DQB1	major histocompatibility complex, class II, DQ beta 1	281	9e-76	O
		HLA-DPB1	major histocompatibility complex, class II, DP beta 1	280	1e-75	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		H2-Eb1	histocompatibility 2, class II antigen E beta	329	3e-90	O
		A130038H09Rik	RIKEN cDNA A130038H09 gene	286	2e-77	O
		H2-Ab1	histocompatibility 2, class II antigen A, beta 1	262	5e-70	O
		H2-Ob	histocompatibility 2, O region beta locus	246	4e-65	O
		H2-DMb2	histocompatibility 2, class II, locus Mb2	78.6	1e-14	O
		H2-DMb1	histocompatibility 2, class II, locus Mb1	76.3	5e-14	O
		H2-Aa	histocompatibility 2, class II antigen A, alpha	70.5	3e-12	O
		Azgp1	alpha-2-glycoprotein 1, zinc	68.2	1e-11
		LOC547343	similar to H-2 class I histocompatibility antigen, L-D alpha chain precursor	68.2	1e-11
		Mr1	major histocompatibility complex, class I-related	67.8	2e-11

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		DLA-DRB1	MHC class II DLA DRB1 beta chain	341	6e-94	O
		DLA-DQB1	MHC class II DLA-DQ beta chain b1 domain	310	2e-84	O
		HLA-DOB	major histocompatibility complex, class II, DO beta	268	7e-72	O
		HLA-DOB	major histocompatibility complex, class II, DO beta	265	7e-71	O
		LOC607827	similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB)	74.3	2e-13	O
		AZGP1	alpha-2-glycoprotein 1, zinc	74.3	2e-13
		DLA-DRA1	MHC class II DR alpha chain	70.1	4e-12	O
		dla88	MHC class I DLA-88	69.7	5e-12
		DLA-79	MHC class Ib	69.7	5e-12
		DLA-79	MHC class Ib	67.4	2e-11

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		BoLA-DRB3	major histocompatibility complex, class II, DRB3	360	1e-99	O
		LOC538700	similar to major histocompatibility complex, class II, DR beta 5 precursor	306	1e-83	O
		BLA-DQB	MHC class II antigen	281	8e-76	O
		BOLA-DQB	major histocompatibility complex, class II, DQ beta	272	3e-73	O
		LOC618722	similar to H-2 class II histocompatibility antigen, I-E beta chain precursor	262	4e-70	O
		BOLA-DYB	major histocompatibility complex, class II, DY beta	246	2e-65	O
		BOLA-DOB	major histocompatibility complex, class II, DO beta	244	1e-64	O
		LOC617421	similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7)	173	2e-43
		hfe	hemochromatosis	80.1	3e-15
		MGC126975	similar to Zinc-alpha-2-glycoprotein precursor (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP)	78.2	1e-14

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		SLA-7	swine leukocyte antigen 7	73.9	6e-15
		B2M	beta 2-microglobulin	58.9	2e-10	O
		FCGRT	neonatal Fc receptor FcRn	58.5	3e-10
		CD1.1	CD1 antigen	55.5	2e-09