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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-014412

Length: 831

Sequence:  [FASTA format sequence]
TATCAACAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XCTGAGTGGG
AGCTGTGTTG ACTACCATTA CTTCTTCGTT TGTCCTCAAT TATGTCTGGG ATGGTGGCTC
TGCGGCTCCC CAGAGGCCTT TGGACAGCGG CCTTGACGGT GATGCTGGTG GTGCTGGGTG
CTCCAATGGC TGAGGGCATA GACTCTCCAT TGGATTTCGT GTATCAGTTT AAGGGCGAGT
GCTACTTCTT CAACGGAACG CAGCGGGTGC GGCATGTGAC CAGATATATC TTCTATCAGT
ATGAGCATGT GCGCTTCTAC AGCGACCTGG GGGAGTTCCG GGTGGTGACT CCGCTGGGGC
GGCCGGACTC TGACCATTGG ATATGGCTAG ATGGACTTCC TGGATTATAC CCTGGTCCTA
AATGGACCCT GTGTGCAAAC ACATTTGCGA GGAGTGAGGA ATGTACTATC CTGCAATGGC
GAGTGCATCC TTCTGTGGAC TATCTCCCTC TTCCACGCTA GGGCTTCTAA CTCACCACAT
CTCGTTGGAT CTTGCTGTGA CACATTTCTA TCCTTCCTAG TTGAATGTCC AATAGGTTCC
TGATTTGCCT GACAATAATA CGTCTTGGTG TTTTGTCCAC TCCCTCTTAT TATGAACGTA
AACTGGATCC TTCCATTTGG TACATGGATC TTGGATATGA TTCTTCCTGC TTAGAGATGT
CTTACACTAG GCCGGTGGTG GCTCTCCTGC CTCTTAAACC CCTTCTTTGC TTCTATGTCT
GTTTCACTTC TATATTATGT CTATATTATT ATTTTTATAC CGTTTTCAGT GGCTTCCTGC
TTTATAGGAA CTTTCTCCGG ACTGGGACCT TTCTCTTCGT TACCTCCGAG TTTCTGAGTG
TATGCTGCGT ATTTAACACG TAACAATTAC TTAGGGAGTT GTTTATTGCT CTTCCTTAAA
GATTTACTCT GTTGTTCTCT TATATTGCAT TTTGCCCTGC TCATCTATTT CGCATTCGTC
GGTTATAGTC CAACATTTGC TCTTATCATG TTCTTGTGGT GTCATTCATT TATCACCATC
CATTGTCCTC TTGCAATGTA GTTTTCTATA ATATATACTT CTGTCCTTCT ACTTAATTTA
TCTATTGTTG ATTCAATAAG GCTCATCGTA GTCGTCCTAA TCTAATCTTC TACAGTGCAC
TTACCGTCAT AATCTGTAAA ATCCTACTGG TGTGTGATGT ACTTTTTTGT ATATCTTTCT
ACCTCGCTCT GTATTCATAC AAGATAGTCT ATACCTTCTG TTTGTGTTCA TAACTACGTC
ATATCTTCAT GGCTGTCGTC CATCTTTTTC CTTGCTATTT CCTCCTCTGT TTCACAGAAA
TAGTCGTGAC GCTCTCTGGT ATTCTCTCTT ATCTTCACAT AAACTCG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		HLA-DQB1	major histocompatibility complex, class II, DQ beta 1	112	2e-25	O
		HLA-DQB2	major histocompatibility complex, class II, DQ beta 2	109	6e-25	O
		HLA-DRB1	major histocompatibility complex, class II, DR beta 1	103	1e-22	O
		LOC649143	similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)	102	3e-22	O
		LOC649143	similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)	102	3e-22	O
		HLA-DRB5	major histocompatibility complex, class II, DR beta 5	99.4	3e-21	O
		HLA-DRB4	major histocompatibility complex, class II, DR beta 4	99.4	3e-21	O
		HLA-DRB3	major histocompatibility complex, class II, DR beta 3	97.1	2e-20	O
		LOC654155	similar to HLA class II histocompatibility antigen, DR-W53 beta chain precursor	95.9	4e-20	O
		HLA-DOB	major histocompatibility complex, class II, DO beta	87.8	1e-17	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		H2-Ab1	histocompatibility 2, class II antigen A, beta 1	106	6e-24	O
		H2-Eb1	histocompatibility 2, class II antigen E beta	85.1	8e-17	O
		H2-Ob	histocompatibility 2, O region beta locus	82.8	4e-16	O
		A130038H09Rik	RIKEN cDNA A130038H09 gene	79	6e-15	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		DLA-DQB1	MHC class II DLA-DQ beta chain b1 domain	138	7e-33	O
		DLA-DRB1	MHC class II DLA DRB1 beta chain	94.4	1e-19	O
		HLA-DOB	major histocompatibility complex, class II, DO beta	82.4	5e-16	O
		HLA-DOB	major histocompatibility complex, class II, DO beta	82.4	5e-16	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		BLA-DQB	MHC class II antigen	135	1e-32	O
		BOLA-DQB	major histocompatibility complex, class II, DQ beta	122	2e-28	O
		BoLA-DRB3	major histocompatibility complex, class II, DRB3	95.9	3e-20	O
		BOLA-DYB	major histocompatibility complex, class II, DY beta	85.1	6e-17	O
		LOC538700	similar to major histocompatibility complex, class II, DR beta 5 precursor	80.5	1e-15	O
		BOLA-DOB	major histocompatibility complex, class II, DO beta	80.1	2e-15	O
		LOC618722	similar to H-2 class II histocompatibility antigen, I-E beta chain precursor	60.5	2e-09	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL