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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-016146

Length: 1,176

Sequence [FASTA format sequence]
TTATATATTA GGCTTAGTGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X
GAGCTGACC GCGACGCAGG TGGACCATGT
GGACCCTGGT GAGCTGGGTG GCCTTGGTGA CAGGGCTGGT GGCTGGAACA CAGTGCCCGG
ATGGTCAGCT CTGCCCCGTG GCCTGCTGCC TGGACCCGGG AGGAGCCAGC TACAGCTGCT
GCAATCCCGT TCCGGACAAG TGGCCCAAGG CACTGAGCCA GCATCTGGGC GTACCCTGCA
AGACTAAAGC CCAGTGCCCT CCTGGCCACT CCTGCATCCT CACCACCAAT GAGACCTCCA
ACTGCTGCCC GTTCCCAGAG GCCGTGTCAT GCAGGGATGG CCTCCACTGC TGCCCCCACG
GCACCTCCTG TGACCTGGCC CATTCCCGCT GCCTCACAGT GACCAACACC CACCCCATGG
CAAAGATCCC TTCACAAGAG ACTATAAAGA CAGCCGTCCA GTGCCCAGAT GCAGAGTCCC
AGTGCCACAA TAATTCCACC TGCTGCAAGC TGTCCAGTGG AAAGTATGGC TGCTGCCCGT
TGCCCAATGC CACCTGCTGC TCCGATCACA TACACTGCTG CCCCCACGGC TTTGTGTGTG
ACCCGGTCAA GAAGGAGTGC TTCTCCAAGG AGAATGAAGC CATAGACTTC TTCACCAAGT
TGCCAGCGCA CTCAGTGCAG GAGGTGAAGT GTGACACAGA GGTGAGCTGC CCGGACGACT
ACACCTGCTG CCGCCTGCAG TCCGGAAAAT GGGGCTGCTG CCCTTTTGTC CAGGCTGTCT
GCTGTAACGA CCACGTACAC TGCTGCCCGA CCGGATATCA GTGTAACATA GAGAAAGGCA
CCTGTGACCT GGAGACCCAG TGGGTGCCCT GGAAGGAAAA AATCCCGGCC AGCCTCAGCC
GGCCGGAACT CCCTACCCTG GAAAAAAAAT GCCCCCTGGG GAAAACGTCT TCCACCTGTC
CCCTCCTCCC ATTACCTGCT TGTCCCGTTC CCCGCCCTGG GAAAAGTGGG GGGTTGCCTG
TTCTTGCCCC CCAAAAAAGG CTTTTCTGGC CGGCCTCCGG AACCACCCCA AAAAACCTGC
CTTGGCCCCC CCAAGGGGGG CCCCCCACCC CTTTGTTTGT TCCGCGCCAA AAGGGGGGAA
ACCCCCTGTT TTAAAAAAAA AAAAAGAAAA AAAAAAAAAA AGAAGGGAAA AAACTAGGTG
GGGGGGG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinGRNgranulin380e-106O
Contig/Assembly ProteinGRNgranulin380e-106O
Contig/Assembly ProteinKRTAP10-1keratin associated protein 10-154.72e-07O
Contig/Assembly ProteinKRTAP10-7keratin associated protein 10-754.32e-07
Contig/Assembly ProteinMEGF10multiple EGF-like-domains 1052.47e-07
Contig/Assembly ProteinKRTAP10-6keratin associated protein 10-6521e-06
Contig/Assembly ProteinLTBP2latent transforming growth factor beta binding protein 250.43e-06


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinGrngranulin3287e-90O
Contig/Assembly ProteinMegf10multiple EGF-like-domains 1056.65e-08
Contig/Assembly ProteinMegf6multiple EGF-like-domains 656.26e-08
Contig/Assembly ProteinMegf6multiple EGF-like-domains 656.26e-08
Contig/Assembly ProteinMegf6multiple EGF-like-domains 656.26e-08
Contig/Assembly ProteinMegf6multiple EGF-like-domains 656.26e-08
Contig/Assembly ProteinMegf6multiple EGF-like-domains 656.26e-08
Contig/Assembly ProteinMegf6multiple EGF-like-domains 656.26e-08
Contig/Assembly ProteinMegf6multiple EGF-like-domains 656.26e-08
Contig/Assembly ProteinMegf6multiple EGF-like-domains 654.72e-07


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC480501similar to granulin isoform 1 precursor3601e-99
Contig/Assembly ProteinLOC489619similar to EGF-like-domain, multiple 357.82e-08
Contig/Assembly ProteinLOC474665similar to MEGF10 protein56.65e-08


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC616459similar to EGF-like-domain, multiple 351.22e-06


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinFBN1fibrillin 143.97e-06


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LNG010032G03LNG01_0032_G03.bBP439146