[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-016891
Length:
1,030
Sequence:
[FASTA format sequence]
NTTTGTTGCA TGTGACTTGA CAGTTTGTCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXATCAT TGCTCTACAA CTCCGAAGAG CAACAGCTGA GACCTCCTTG
AGAAGAGCAT GGTCCCAGGC CGAGTTCTGA TGTGGGGGGC CCTCGCCCTG ACCGCCGTGA
TGAGCGCCTG TGGAGGTGAA GACATTGCGG CCGACCATGT TGCCTCTGTT TAGCAAATTT
AGAAGTTTTG ACCCACAGGG TGCACTGAGG AACATAGCTA CGGCAAAACA TAATTTGAAC
ATCCTGATTA AACGTTCCAA CAACACCGCG GCTGTCAATC AGGTTCCTGA GGTGACTGTG
TTTCCCAAGT CTCCAGTGAT GCTGGGTCAG CCCAACACCC TCATCTGTCA TGTGGACAAC
ATCTTTCCTC CTGTGATCAA CATCACGTGG TTGAAGAACG GGCACTCTGT CACAGAAGGT
TTTTCTGAGA CCAGCTTCCT CTCCAAAAAT GATCATTCCT TCCTCAAGAT CAGTTATCTC
ACCTTCCTCC CTTCTGATGA TGATTTTTAT GACTGCAAAG TGGAGCACTG GGGCCTGGAT
AAGCCACTTC TGAAACACTG GGAACCTGAG ATTCCAGCCC CCATGTCAGA GCTGACAGAG
ACAGTGGTCT GCGCCCTGGG ATTGATCGTG GGCCTTGTGG GCATCGTGGT GGGCACTGTC
TTCATCATTC AAGGCCTACG CTCAGGTGGT CCCTCTAGAC ACCAAGGGTC CTTGTGAGTC
ACACTCCAGA AAGGAAGGTG CACTGCCCGC CTACAAGAGC TGAAGAGTGG ATGTGCTCAA
CGACCTAGAA CTATTTTCTG GCCCAATTCA TCATATACCT TCTCTCTTCC TACATTCTTC
TTCTCACCTC TTCTCTGGGA CTTANGGTGC TGTGTCATCT CAGAATTCAT ATNGCCTTGG
AATCCTCTTC CTGACCTTCT AGGTTTTTTT TTCTTTTCTC AGTTGTTACC TGTTATGGGA
TCTCTGAAAT ATCCCACTCG GCTACCTGAT CCCTCAGTGA CCTTAACTAA TATGTACATG
AAANCATAAA TCACTTCCTG AGTTTTTGTN NNNNAANNNN NNNNNNNNNN NNNNNNNNNN
NNNNNNNANA ANANNGGGCC CTTGGGCCCA ACTTGCAGTC CCGCCCCCTT AATTTCCCTT
AGGGGGCCAA GTTTCCGTAC CAGTTTTTTG AAAAAGGGGC CCTATGGGGC CATTATAACG
GGCGGGGGGC CGTTTAACCC TGGGCGGGAA AACTTTTCTT GGTTTTTT
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 280 | 6e-84 | |||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 280 | 6e-84 | |||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 280 | 6e-84 | |||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 280 | 6e-84 | |||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 276 | 2e-82 | |||
HLA-DQA2 | major histocompatibility complex, class II, DQ alpha 2 | 270 | 5e-81 | |||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 262 | 1e-78 | |||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 262 | 1e-78 | |||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 262 | 1e-78 | |||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 262 | 1e-78 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
H2-Aa | histocompatibility 2, class II antigen A, alpha | 255 | 2e-72 | |||
H2-Ea | histocompatibility 2, class II antigen E alpha | 186 | 3e-47 | |||
H2-Oa | histocompatibility 2, O region alpha locus | 178 | 7e-45 | |||
H2-DMa | histocompatibility 2, class II, locus DMa | 71.2 | 2e-12 | |||
H2-Ob | histocompatibility 2, O region beta locus | 70.9 | 2e-12 | |||
B2m | beta-2 microglobulin | 67.4 | 2e-11 | O | ||
H2-Eb1 | histocompatibility 2, class II antigen E beta | 63.9 | 3e-10 | |||
H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 | 63.5 | 3e-10 | |||
A130038H09Rik | RIKEN cDNA A130038H09 gene | 63.5 | 3e-10 | |||
H2-DMb2 | histocompatibility 2, class II, locus Mb2 | 63.5 | 3e-10 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
dqa1 | MHC class II DLA DQalpha chain | 278 | 3e-80 | |||
DLA-DRA1 | MHC class II DR alpha chain | 189 | 5e-48 | |||
LOC474869 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 187 | 2e-47 | O | ||
DLA-DQB1 | MHC class II DLA-DQ beta chain b1 domain | 68.2 | 1e-11 | |||
DLA-DRB1 | MHC class II DLA DRB1 beta chain | 67.8 | 2e-11 | |||
HLA-DMA | major histocompatibility complex, class II, DM alpha | 67.8 | 2e-11 | O | ||
HLA-DMA | major histocompatibility complex, class II, DM alpha | 67.8 | 2e-11 | |||
LOC478284 | similar to beta-2-microglobulin precursor | 65.5 | 8e-11 | O | ||
LOC478284 | similar to beta-2-microglobulin precursor | 65.5 | 8e-11 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 60.5 | 3e-09 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
BOLA-DQA1 | histocompatibility complex, class II, DQ alpha, type 1 | 295 | 3e-80 | |||
BOLA-DQA | major histocompatibility complex, class II, DQ alpha | 272 | 7e-79 | |||
BOLA-DQA2 | major histocompatibility complex, class II, DQ alpha 1 | 239 | 4e-70 | |||
BOLA-DYA | major histocompatibility complex, class II, DY alpha | 221 | 4e-61 | |||
BOLA-DRA | major histocompatibility complex, class II, DR alpha | 193 | 2e-49 | |||
LOC525727 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 190 | 2e-48 | |||
LOC525727 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 187 | 9e-48 | |||
B2M | beta-2-microglobulin | 71.2 | 1e-12 | O | ||
BOLA-DOB | major histocompatibility complex, class II, DO beta | 65.5 | 7e-11 | |||
BLA-DQB | MHC class II antigen | 65.1 | 9e-11 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
SLA-DMA | SLA-DM alpha chain | 73.9 | 6e-15 | |||
B2M | beta 2-microglobulin | 71.2 | 4e-14 | O | ||
SLA-7 | swine leukocyte antigen 7 | 51.6 | 3e-08 |
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