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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-016891

Length: 1,030

Sequence [FASTA format sequence]
NTTTGTTGCA TGTGACTTGA CAGTTTGTCX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXX
ATCAT TGCTCTACAA CTCCGAAGAG CAACAGCTGA GACCTCCTTG
AGAAGAGCAT GGTCCCAGGC CGAGTTCTGA TGTGGGGGGC CCTCGCCCTG ACCGCCGTGA
TGAGCGCCTG TGGAGGTGAA GACATTGCGG CCGACCATGT TGCCTCTGTT TAGCAAATTT
AGAAGTTTTG ACCCACAGGG TGCACTGAGG AACATAGCTA CGGCAAAACA TAATTTGAAC
ATCCTGATTA AACGTTCCAA CAACACCGCG GCTGTCAATC AGGTTCCTGA GGTGACTGTG
TTTCCCAAGT CTCCAGTGAT GCTGGGTCAG CCCAACACCC TCATCTGTCA TGTGGACAAC
ATCTTTCCTC CTGTGATCAA CATCACGTGG TTGAAGAACG GGCACTCTGT CACAGAAGGT
TTTTCTGAGA CCAGCTTCCT CTCCAAAAAT GATCATTCCT TCCTCAAGAT CAGTTATCTC
ACCTTCCTCC CTTCTGATGA TGATTTTTAT GACTGCAAAG TGGAGCACTG GGGCCTGGAT
AAGCCACTTC TGAAACACTG GGAACCTGAG ATTCCAGCCC CCATGTCAGA GCTGACAGAG
ACAGTGGTCT GCGCCCTGGG ATTGATCGTG GGCCTTGTGG GCATCGTGGT GGGCACTGTC
TTCATCATTC AAGGCCTACG CTCAGGTGGT CCCTCTAGAC ACCAAGGGTC CTTGTGAGTC
ACACTCCAGA AAGGAAGGTG CACTGCCCGC CTACAAGAGC TGAAGAGTGG ATGTGCTCAA
CGACCTAGAA CTATTTTCTG GCCCAATTCA TCATATACCT TCTCTCTTCC TACATTCTTC
TTCTCACCTC TTCTCTGGGA CTTANGGTGC TGTGTCATCT CAGAATTCAT ATNGCCTTGG
AATCCTCTTC CTGACCTTCT AGGTTTTTTT TTCTTTTCTC AGTTGTTACC TGTTATGGGA
TCTCTGAAAT ATCCCACTCG GCTACCTGAT CCCTCAGTGA CCTTAACTAA TATGTACATG
AAANCATAAA TCACTTCCTG AGTTTTTGTN NNNNAANNNN NNNNNNNNNN NNNNNNNNNN
NNNNNNNANA ANANNGGGCC CTTGGGCCCA ACTTGCAGTC CCGCCCCCTT AATTTCCCTT
AGGGGGCCAA GTTTCCGTAC CAGTTTTTTG AAAAAGGGGC CCTATGGGGC CATTATAACG
GGCGGGGGGC CGTTTAACCC TGGGCGGGAA AACTTTTCTT GGTTTTTT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)2806e-84
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)2806e-84
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)2806e-84
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)2806e-84
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 12762e-82
Contig/Assembly ProteinHLA-DQA2major histocompatibility complex, class II, DQ alpha 22705e-81
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 12621e-78
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 12621e-78
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 12621e-78
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 12621e-78


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Aahistocompatibility 2, class II antigen A, alpha2552e-72
Contig/Assembly ProteinH2-Eahistocompatibility 2, class II antigen E alpha1863e-47
Contig/Assembly ProteinH2-Oahistocompatibility 2, O region alpha locus1787e-45
Contig/Assembly ProteinH2-DMahistocompatibility 2, class II, locus DMa71.22e-12
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus70.92e-12
Contig/Assembly ProteinB2mbeta-2 microglobulin67.42e-11O
Contig/Assembly ProteinH2-Eb1histocompatibility 2, class II antigen E beta63.93e-10
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 163.53e-10
Contig/Assembly ProteinA130038H09RikRIKEN cDNA A130038H09 gene63.53e-10
Contig/Assembly ProteinH2-DMb2histocompatibility 2, class II, locus Mb263.53e-10


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly Proteindqa1MHC class II DLA DQalpha chain2783e-80
Contig/Assembly ProteinDLA-DRA1MHC class II DR alpha chain1895e-48
Contig/Assembly ProteinLOC474869similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)1872e-47O
Contig/Assembly ProteinDLA-DQB1MHC class II DLA-DQ beta chain b1 domain68.21e-11
Contig/Assembly ProteinDLA-DRB1MHC class II DLA DRB1 beta chain67.82e-11
Contig/Assembly ProteinHLA-DMAmajor histocompatibility complex, class II, DM alpha67.82e-11O
Contig/Assembly ProteinHLA-DMAmajor histocompatibility complex, class II, DM alpha67.82e-11
Contig/Assembly ProteinLOC478284similar to beta-2-microglobulin precursor65.58e-11O
Contig/Assembly ProteinLOC478284similar to beta-2-microglobulin precursor65.58e-11O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta60.53e-09


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBOLA-DQA1histocompatibility complex, class II, DQ alpha, type 12953e-80
Contig/Assembly ProteinBOLA-DQAmajor histocompatibility complex, class II, DQ alpha2727e-79
Contig/Assembly ProteinBOLA-DQA2major histocompatibility complex, class II, DQ alpha 12394e-70
Contig/Assembly ProteinBOLA-DYAmajor histocompatibility complex, class II, DY alpha2214e-61
Contig/Assembly ProteinBOLA-DRAmajor histocompatibility complex, class II, DR alpha1932e-49
Contig/Assembly ProteinLOC525727similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)1902e-48
Contig/Assembly ProteinLOC525727similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)1879e-48
Contig/Assembly ProteinB2Mbeta-2-microglobulin71.21e-12O
Contig/Assembly ProteinBOLA-DOBmajor histocompatibility complex, class II, DO beta65.57e-11
Contig/Assembly ProteinBLA-DQBMHC class II antigen65.19e-11


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLA-DMASLA-DM alpha chain73.96e-15
Contig/Assembly ProteinB2Mbeta 2-microglobulin71.24e-14O
Contig/Assembly ProteinSLA-7swine leukocyte antigen 751.63e-08


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LNG010062G11LNG01_0062_G11.bBP439821 AK393864