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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-017618

Length: 356

Sequence [FASTA format sequence]
NNTTTATTCA TATAAAAATT TTTAAAAAAC GGGGGTGCCG CCCCCGAATA CCTCGAGCAG
TGTGGGTNTT NNNNNNNTTT TTNNNNGGCA CGAATTGNAA GNTTGTCXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX
TGG TTCATTGCTC TACAACTCCG
AAGAGCAACA GCTGAGACCA CCTTGAGAAG AGCATGGTCC CAGGCCGAGT TCTGATGTGG
GGGGCCCTCG CCCTGACCGC CGTGATGAGC GCCTGTGGAG GTGAAGACAT TGCGGCCGAC
CATGTTGCCT CCTATGGCTT TAATGTCTAC CAGTCTTACG GTCCCAGCGG CTATTATACC
CATGAATTTG ATGGCGACGA AGAATTCTAC GTGNACCTGG GGAAGAAGAG ACTGTCTTGC
ACCTGCCTCT GTTAAGCAAA TTTAAAAGTT TTGACCCACC AGGGTGCACT GTAGAACAAA
CCTACGGCCA AACAAATTTT AAACATCCTG ATTAACCGTT CCAACAAACC CGCGGCTGGT
AATTAGTTTC CCTAAGGGAA GGGGGTTCCC CAATTCCCCA TGATCTTGGG GTAGCCAAAA
ACCCCTTATT TTTTATGGGG AAAAAACTTT TCCCCCGGGG TTCAACACCC CCGGGTTAAA
AAACGGGCCC TTTTCAAAAA AATTTTTTTA AAACCCCCTT CCCTCCCAAA AAAAAATTTT
TCCCCCCCAA AAAAGTTTAT TCCCCCCCCC CCCCCCTGGA AGGGATTTTT TTAACCCCCC
AAGGGAAAAA CTTGGGCCCG GTAATAAACC CCTCTTTAAA ACAGGGAAAA CAATAATTTT
TCCCCCCCCT TTTAAAAAAT AAAAAAAAAA AGGGTTTTCC CCCCCCAAAA AATATAGGGC
CTCTTTTTGC CCCCCGGGGG GGGGTTTTTT TTTTTTTTAT TGGGGCCCCC CCCCGGGGGG
GCCCCTTACA AAAAAAAGGG GGTTTTTTGT TTTTTCCCCC TCCAAAGAAA GGGGGGTGTC
CGCCCCCCCC CAAAAAAAAA AAAAAAGGTG TTTGTTCCCC CCCACCACAA AAATTTTTTT
TTGCGGAGAA AAAAAAAAAA AAAATCTCTC CCCCCCAAAA ATATTTTTTT CCCACCCTTC
CGGAGAAAAA AAAAGGGGGT GGTGTTCCCC CAAAAATTTA ATAGCCCCTG GAAACACCTT
CTTCAGAACT CTCAGGTTTT TTTTCCTTTT CCCATTTACC CGTTAGGGAT TCCCTGAAAA
TCCCACCTCG CTCCCGATTC CCCAGTGACC CTAAAACTAT TTTTATTGGA AACAAAAATC
CCTTCTGGAG TTTTTTTCCT AAAAAAAAAA AAAAAAGGCC ATTTTTTTAA GTCTAAGTCC
CGCCCCCCTT AATACCT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 11111e-25O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 11111e-25O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 11111e-25O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 11111e-25O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 11111e-25O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 11111e-25O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 11111e-25O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 11111e-25O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 11111e-25O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 11111e-25O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Aahistocompatibility 2, class II antigen A, alpha81.61e-16O
Contig/Assembly ProteinH2-Oahistocompatibility 2, O region alpha locus50.82e-07O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly Proteindqa1MHC class II DLA DQalpha chain1081e-24O
Contig/Assembly ProteinLOC474869similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)521e-07O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBOLA-DQA1histocompatibility complex, class II, DQ alpha, type 11033e-23O
Contig/Assembly ProteinBOLA-DQA2major histocompatibility complex, class II, DQ alpha 1997e-22O
Contig/Assembly ProteinBOLA-DQAmajor histocompatibility complex, class II, DQ alpha96.33e-22O
Contig/Assembly ProteinBOLA-DYAmajor histocompatibility complex, class II, DY alpha87.42e-18O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LNG010079B10LNG01_0079_B10.bBP434768