[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-017618
Length:
356
Sequence:
[FASTA format sequence]
NNTTTATTCA TATAAAAATT TTTAAAAAAC GGGGGTGCCG CCCCCGAATA CCTCGAGCAG
TGTGGGTNTT NNNNNNNTTT TTNNNNGGCA CGAATTGNAA GNTTGTCXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXTGG TTCATTGCTC TACAACTCCG
AAGAGCAACA GCTGAGACCA CCTTGAGAAG AGCATGGTCC CAGGCCGAGT TCTGATGTGG
GGGGCCCTCG CCCTGACCGC CGTGATGAGC GCCTGTGGAG GTGAAGACAT TGCGGCCGAC
CATGTTGCCT CCTATGGCTT TAATGTCTAC CAGTCTTACG GTCCCAGCGG CTATTATACC
CATGAATTTG ATGGCGACGA AGAATTCTAC GTGNACCTGG GGAAGAAGAG ACTGTCTTGC
ACCTGCCTCT GTTAAGCAAA TTTAAAAGTT TTGACCCACC AGGGTGCACT GTAGAACAAA
CCTACGGCCA AACAAATTTT AAACATCCTG ATTAACCGTT CCAACAAACC CGCGGCTGGT
AATTAGTTTC CCTAAGGGAA GGGGGTTCCC CAATTCCCCA TGATCTTGGG GTAGCCAAAA
ACCCCTTATT TTTTATGGGG AAAAAACTTT TCCCCCGGGG TTCAACACCC CCGGGTTAAA
AAACGGGCCC TTTTCAAAAA AATTTTTTTA AAACCCCCTT CCCTCCCAAA AAAAAATTTT
TCCCCCCCAA AAAAGTTTAT TCCCCCCCCC CCCCCCTGGA AGGGATTTTT TTAACCCCCC
AAGGGAAAAA CTTGGGCCCG GTAATAAACC CCTCTTTAAA ACAGGGAAAA CAATAATTTT
TCCCCCCCCT TTTAAAAAAT AAAAAAAAAA AGGGTTTTCC CCCCCCAAAA AATATAGGGC
CTCTTTTTGC CCCCCGGGGG GGGGTTTTTT TTTTTTTTAT TGGGGCCCCC CCCCGGGGGG
GCCCCTTACA AAAAAAAGGG GGTTTTTTGT TTTTTCCCCC TCCAAAGAAA GGGGGGTGTC
CGCCCCCCCC CAAAAAAAAA AAAAAAGGTG TTTGTTCCCC CCCACCACAA AAATTTTTTT
TTGCGGAGAA AAAAAAAAAA AAAATCTCTC CCCCCCAAAA ATATTTTTTT CCCACCCTTC
CGGAGAAAAA AAAAGGGGGT GGTGTTCCCC CAAAAATTTA ATAGCCCCTG GAAACACCTT
CTTCAGAACT CTCAGGTTTT TTTTCCTTTT CCCATTTACC CGTTAGGGAT TCCCTGAAAA
TCCCACCTCG CTCCCGATTC CCCAGTGACC CTAAAACTAT TTTTATTGGA AACAAAAATC
CCTTCTGGAG TTTTTTTCCT AAAAAAAAAA AAAAAAGGCC ATTTTTTTAA GTCTAAGTCC
CGCCCCCCTT AATACCT
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 111 | 1e-25 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 111 | 1e-25 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 111 | 1e-25 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 111 | 1e-25 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 111 | 1e-25 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 111 | 1e-25 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 111 | 1e-25 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 111 | 1e-25 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 111 | 1e-25 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 111 | 1e-25 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
H2-Aa | histocompatibility 2, class II antigen A, alpha | 81.6 | 1e-16 | O | ||
H2-Oa | histocompatibility 2, O region alpha locus | 50.8 | 2e-07 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
dqa1 | MHC class II DLA DQalpha chain | 108 | 1e-24 | O | ||
LOC474869 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 52 | 1e-07 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
BOLA-DQA1 | histocompatibility complex, class II, DQ alpha, type 1 | 103 | 3e-23 | O | ||
BOLA-DQA2 | major histocompatibility complex, class II, DQ alpha 1 | 99 | 7e-22 | O | ||
BOLA-DQA | major histocompatibility complex, class II, DQ alpha | 96.3 | 3e-22 | O | ||
BOLA-DYA | major histocompatibility complex, class II, DY alpha | 87.4 | 2e-18 | O |
Locus | Definition | Score | E value | FL |
---|
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