[Help]

[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-020207

Length: 1,067

Sequence [FASTA format sequence]
TTAAACGCAT TAGTGXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXX
ACTGGC ATTTCTAATC CTTTGGAGAA CAGAGAAGTA
AAATTCAAAG GCAGTTAAAT CAGAAGTGTT TGAAATCTGA CATCTACTCC CAAACAAGCA
TTTCTCAGGA GGCCCCCATA CCATGTGGCT GTACCTGGCT GTCCTCGTGG GCCTGTACTA
CCTCCTTCGC TGGTACCGGG AAAGGCAGAT GGTTAGCCAC CTTGGGGATA AGTATGTCTT
CATCACGGGC TGTGACTCGG GCTTCGGGAA CCTGCTGGCC AGGCAGCTGG ATGTGAGGGG
CCCAGCTGGA GACGGTGCTC TTGGACGTGA CCAAGACAGA GAGCATTGCT GCAGCCACCC
AGTGGGTGAA GGAGCGTGTC GGGGACAGAG GACTCTGGGG TCTGGTCAAC AATGCAGGCA
CTTTTCACCC ACTGTGCATC ACTGAGTGGC TGAAGACTGA GACCTGGATA CATACCCTCA
AAGTGAACCT CATTGGTGTG ACAGAGGTGA CCTTGAGCAT GCTTCCCTTG GTGAAGAAAG
CACAGGGGAG AATTGTCAAT GTCTCCAGCA TTCTGGGAAG AGTTGCTTTC TTTGGAGCAG
TCTACTCTAG CTCCAAGCAT GGAGTGGAAG CCTTTTCAGA TGTCCTGAGA TGTGAGCTTC
AGCATTTTGG GGTGAAAGTC AGCATAGTTG AACCTGGTTA CTTCAGAACA GGAATGACAG
ATGTGCAGAA GTCCTCAGAG GCAATGAAGC AAGTCTGGAA AGAAGTCCCT GCTCATATTA
AGGACACCTA TGGACAGAAG TTTTTTGATG CCTATCACGA TGTTATGAAA CAAGGGCTGT
CTAGTTGTAG CACAAACCTG AACCTGGTCA CGGACTGCAT GGAACACGCT CTGACATCTG
TGCATCCCCG CACTCGGTAC TCAGCTGGCT GGGATGCTCA ATTTTTTCTC ATCCCTCTGT
CTTATTTACT TACATCCCTG GGAAACTACA TACTGAACTA AATCTTGGGC CCAAACCATT
GCCAGGCATT TAAAAAAAAA TTTTTTTTGT GGGCCCTTCA AACAAAAAAA AAAAAAAATC
TTAAAATTTT TTTATTTTCC TCAATTAAAC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHSD17B6hydroxysteroid (17-beta) dehydrogenase 6358e-116O
Contig/Assembly ProteinRDH16retinol dehydrogenase 16 (all-trans)2536e-83O
Contig/Assembly ProteinDHRS9dehydrogenase/reductase (SDR family) member 92211e-65O
Contig/Assembly ProteinDHRS9dehydrogenase/reductase (SDR family) member 92211e-65O
Contig/Assembly ProteinSDR-Oorphan short-chain dehydrogenase / reductase2218e-69O
Contig/Assembly ProteinRDH5retinol dehydrogenase 5 (11-cis/9-cis)2051e-59O
Contig/Assembly ProteinBDH13-hydroxybutyrate dehydrogenase, type 11485e-40
Contig/Assembly ProteinBDH13-hydroxybutyrate dehydrogenase, type 11485e-40
Contig/Assembly ProteinBDH13-hydroxybutyrate dehydrogenase, type 11485e-40
Contig/Assembly ProteinHSD11B2hydroxysteroid (11-beta) dehydrogenase 21144e-29


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHsd17b9hydroxysteroid (17-beta) dehydrogenase 9321e-104O
Contig/Assembly ProteinRdh1retinol dehydrogenase 1 (all trans)2762e-88O
Contig/Assembly ProteinRdh9retinol dehydrogenase 92751e-87O
Contig/Assembly ProteinRdh7retinol dehydrogenase 72747e-89O
Contig/Assembly ProteinRdh16retinol dehydrogenase 162735e-87O
Contig/Assembly ProteinRdhsretinol dehydrogenase similar2711e-87O
Contig/Assembly ProteinBC089597cDNA sequence BC0895972681e-85O
Contig/Assembly ProteinDhrs9dehydrogenase/reductase (SDR family) member 92247e-67O
Contig/Assembly ProteinSdroorphan short chain dehydrogenase/reductase2194e-68O
Contig/Assembly ProteinRdh5retinol dehydrogenase 52151e-62O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC481118similar to 3-hydroxysteroid epimerase367e-119O
Contig/Assembly ProteinLOC481118similar to 3-hydroxysteroid epimerase357e-115O
Contig/Assembly ProteinLOC474409similar to microsomal NAD+-dependent retinol dehydrogenase 42644e-88O
Contig/Assembly ProteinLOC474409similar to microsomal NAD+-dependent retinol dehydrogenase 42568e-86O
Contig/Assembly ProteinLOC481119similar to orphan short-chain dehydrogenase / reductase2349e-73O
Contig/Assembly ProteinLOC488391similar to NADP-dependent retinol dehydrogenase/reductase2301e-68
Contig/Assembly ProteinLOC481099similar to 11-cis retinol dehydrogenase (11-cis RDH)2144e-63
Contig/Assembly ProteinLOC488037similar to 3-hydroxybutyrate dehydrogenase precursor1453e-39O
Contig/Assembly ProteinLOC489690similar to hydroxysteroid (17-beta) dehydrogenase 21203e-30
Contig/Assembly ProteinHSD11B2hydroxysteroid (11-beta) dehydrogenase 21152e-27O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMGC127926similar to 3-hydroxysteroid epimerase392e-125O
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 42618e-87O
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 42618e-87O
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 42618e-87O
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 42618e-87O
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 42563e-85O
Contig/Assembly ProteinLOC522844similar to microsomal NAD+-dependent retinol dehydrogenase 42502e-82O
Contig/Assembly ProteinLOC538876similar to orphan short-chain dehydrogenase / reductase2321e-72O
Contig/Assembly ProteinRDHLNADP-dependent retinol dehydrogenase/reductase2291e-68O
Contig/Assembly ProteinRDH5retinol dehydrogenase 5 (11-cis and 9-cis)2025e-58O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHSD11B2hydroxysteroid 11-beta dehydrogenase 21208e-33


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LVR010065H06LVR01_0065_H06.bBP447653