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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-021637

Length: 491

Sequence [FASTA format sequence]
CGGCGCCCAT CCCCGCCGGG GCCGCGCCNA CGCCCACCCC CTACCTCCCC CCACCCCCCC
CCCCCCGCCC CTCATTGTCA AACANAGGCT GGTACGGTCT CTAGTCCTCA AACCTGCTGG
CCTACCGGAC TTGTTACATT TCTAGTCCTT TGGACAACAG AAATCTCAAT TCAAAGGCAG
TTCCATCAGA AATGTTTGAA ATCTGACATC TACTCCCAAA CAAGCATTTC TCAGGAGGTC
CCCATACCAT GTGGCTGTAC CTGGCTGTCC TCGTGGGCCT GTACTACCTC CTTCGCTGGT
ACCGGGAAAG GCACATGCCT ACCCACCTTG CGGATAAGTA TGTCTTCCTC ACGGGCTGTG
ACTCGGGCTT TGGCAACCTG TTGGCGAGGC AGCTGCATGT GACGGCNTTG AGGGTCCTGC
CTCGCTGTCT GACAGAGCAC GCGTGCGCTC ACCTGAGGAA GCAGACCCCA CACCCGCTGG
ACACGGTGCT CTTGGCAGTG ACCAAGACAG AGAGCATTGC TGCCGTCACT TGCTGCTTGA
AGGAGCGTGT CGGGGACACA TGATTCTGCT GTCTGGTCAA CACTGCTGGC ACTTTTCACC
CACTCTGCAT CACCTCATGG CTGAAGACTG CCACCTGGAT ACATACTCTT ACCCTGAACC
TCATTGGCGT GACACAGGCC CACCTTTCAC CCGCTTCCTT TATCTCAAAC ATCACCTGGT
ATAACTGTCA ATGCTTCCCC TCATCTAGCA ACAGCCGGTT TCCCGTACCG CCCCCCCTCC
CTCCAACTAT CGACGCCACC CTTTTAGATG TCCTCCACCC TCCA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHSD17B6hydroxysteroid (17-beta) dehydrogenase 61039e-23O
Contig/Assembly ProteinRDH16retinol dehydrogenase 16 (all-trans)1022e-22O
Contig/Assembly ProteinSDR-Oorphan short-chain dehydrogenase / reductase822e-16O
Contig/Assembly ProteinDHRS9dehydrogenase/reductase (SDR family) member 965.13e-11O
Contig/Assembly ProteinDHRS9dehydrogenase/reductase (SDR family) member 965.13e-11O
Contig/Assembly ProteinRDH5retinol dehydrogenase 5 (11-cis/9-cis)56.61e-08O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHsd17b9hydroxysteroid (17-beta) dehydrogenase 91036e-23O
Contig/Assembly ProteinRdh7retinol dehydrogenase 798.63e-21O
Contig/Assembly ProteinRdhsretinol dehydrogenase similar97.85e-21O
Contig/Assembly ProteinAY053573cDNA sequence AY05357395.52e-20O
Contig/Assembly ProteinRdh1retinol dehydrogenase 1 (all trans)95.13e-20O
Contig/Assembly ProteinRdh16retinol dehydrogenase 16923e-19O
Contig/Assembly ProteinBC089597cDNA sequence BC08959791.73e-19O
Contig/Assembly ProteinRdh9retinol dehydrogenase 991.73e-19O
Contig/Assembly ProteinSdroorphan short chain dehydrogenase/reductase82.82e-16O
Contig/Assembly ProteinDhrs9dehydrogenase/reductase (SDR family) member 969.32e-12O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC481118similar to 3-hydroxysteroid epimerase1083e-24O
Contig/Assembly ProteinLOC474409similar to microsomal NAD+-dependent retinol dehydrogenase 41082e-24O
Contig/Assembly ProteinLOC474409similar to microsomal NAD+-dependent retinol dehydrogenase 41082e-24O
Contig/Assembly ProteinLOC481118similar to 3-hydroxysteroid epimerase1083e-24O
Contig/Assembly ProteinLOC481119similar to orphan short-chain dehydrogenase / reductase85.92e-17O
Contig/Assembly ProteinLOC488391similar to NADP-dependent retinol dehydrogenase/reductase64.74e-11
Contig/Assembly ProteinLOC481099similar to 11-cis retinol dehydrogenase (11-cis RDH)58.92e-09O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 41052e-23O
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 41052e-23O
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 41052e-23O
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 41052e-23O
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 41052e-23O
Contig/Assembly ProteinMGC127926similar to 3-hydroxysteroid epimerase1039e-23O
Contig/Assembly ProteinLOC522844similar to microsomal NAD+-dependent retinol dehydrogenase 41004e-22O
Contig/Assembly ProteinLOC614621similar to retinol dehydrogenase 161004e-22O
Contig/Assembly ProteinLOC519718similar to microsomal NAD+-dependent retinol dehydrogenase 41006e-22O
Contig/Assembly ProteinLOC538876similar to orphan short-chain dehydrogenase / reductase88.23e-18O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LVRM10027C01LVRM1_0027_C01.b