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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-021932

Length: 478

Sequence [FASTA format sequence]
TTGTCXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXTA
GTCTCAGTAT TTCCTTCTCA CTTGTTACAT TTCTAATCCT TTGGAGAACA GAGAAGTAAA
ATTCAAAGGC AGTTAAATCA GAAGTGTTTG AAATCTGACA TCTACTCCCA AACAAGCATT
TCTCAGGAGG CCCCCATACC ATGTGGCTGT ACCTGGCTGT CCTCGTGGGC CTGTACTACC
TCCTTCGCTG GTACCGGGAA AGGCAGATGG TTAGCCACCT TGGGGATAAG TATGTCTTCA
TCACGGGCTG TGACTCGGGC TTTGGGAACC TGCTGGCGAG GCAGCTGGAT GTGAGGGGCT
TGAGGGTCCT GGCTGCATGT CTGACGGAGC AAGGGGCCCA GCAGCTGAGG AAGCAGACGT
CAGACAGGCT GGAGACGGTG CTCTTGGACG TGACCAAAAC AGAGAACATT GCTGCCGCCA
CCCAGTGTGT GAAGGAACAC GTGGGCGAAA GAGAAATCTG AGGTCTGAGA CACAAGGCGT
GGACAATACG AGGAGTGTGA GTGAGCGACA AAATGCGCGC GCGGAGTGGA AACATCCCCA
TTAGGTAACC ACCCCAGAGT GCTGAGTAGA GCCACCAATC CTTGAGCACT TAAACGCGAA
GTAAAAATAA TGGAGCGTGA TCGACAACCG CAAAGTGCAC CATATGTACA AGAAAGCAGT
GAGGGAGAGT GACGCTATAA CAATGCACAC AGAAAGGATG CCAAAGAGAT AGTGAAGCAC
ATCGCGGCAA GGAAGT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHSD17B6hydroxysteroid (17-beta) dehydrogenase 61606e-40O
Contig/Assembly ProteinRDH16retinol dehydrogenase 16 (all-trans)1473e-36O
Contig/Assembly ProteinSDR-Oorphan short-chain dehydrogenase / reductase1174e-27O
Contig/Assembly ProteinDHRS9dehydrogenase/reductase (SDR family) member 91043e-23O
Contig/Assembly ProteinDHRS9dehydrogenase/reductase (SDR family) member 91043e-23O
Contig/Assembly ProteinRDH5retinol dehydrogenase 5 (11-cis/9-cis)90.17e-19O
Contig/Assembly ProteinBDH13-hydroxybutyrate dehydrogenase, type 159.71e-09O
Contig/Assembly ProteinBDH13-hydroxybutyrate dehydrogenase, type 159.71e-09O
Contig/Assembly ProteinBDH13-hydroxybutyrate dehydrogenase, type 159.71e-09O
Contig/Assembly ProteinHSD11B2hydroxysteroid (11-beta) dehydrogenase 254.73e-08


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHsd17b9hydroxysteroid (17-beta) dehydrogenase 91568e-39O
Contig/Assembly ProteinRdh7retinol dehydrogenase 71513e-37O
Contig/Assembly ProteinRdhsretinol dehydrogenase similar1491e-36O
Contig/Assembly ProteinAY053573cDNA sequence AY0535731482e-36O
Contig/Assembly ProteinRdh1retinol dehydrogenase 1 (all trans)1476e-36O
Contig/Assembly ProteinRdh16retinol dehydrogenase 161476e-36O
Contig/Assembly ProteinRdh9retinol dehydrogenase 91437e-35O
Contig/Assembly ProteinBC089597cDNA sequence BC0895971404e-34O
Contig/Assembly ProteinSdroorphan short chain dehydrogenase/reductase1174e-27O
Contig/Assembly ProteinDhrs9dehydrogenase/reductase (SDR family) member 91108e-25O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC474409similar to microsomal NAD+-dependent retinol dehydrogenase 41621e-40O
Contig/Assembly ProteinLOC474409similar to microsomal NAD+-dependent retinol dehydrogenase 41621e-40O
Contig/Assembly ProteinLOC481118similar to 3-hydroxysteroid epimerase1591e-39O
Contig/Assembly ProteinLOC481118similar to 3-hydroxysteroid epimerase1591e-39O
Contig/Assembly ProteinLOC481119similar to orphan short-chain dehydrogenase / reductase1237e-29O
Contig/Assembly ProteinLOC488391similar to NADP-dependent retinol dehydrogenase/reductase1022e-22
Contig/Assembly ProteinLOC481099similar to 11-cis retinol dehydrogenase (11-cis RDH)97.45e-21O
Contig/Assembly ProteinLOC488037similar to 3-hydroxybutyrate dehydrogenase precursor60.19e-10O
Contig/Assembly ProteinLOC489690similar to hydroxysteroid (17-beta) dehydrogenase 253.97e-08
Contig/Assembly ProteinHSD11B2hydroxysteroid (11-beta) dehydrogenase 250.11e-06O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 41574e-39O
Contig/Assembly ProteinLOC519718similar to microsomal NAD+-dependent retinol dehydrogenase 41573e-39O
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 41574e-39O
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 41574e-39O
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 41574e-39O
Contig/Assembly ProteinLOC519940similar to microsomal NAD+-dependent retinol dehydrogenase 41574e-39O
Contig/Assembly ProteinMGC127926similar to 3-hydroxysteroid epimerase1543e-38O
Contig/Assembly ProteinLOC614621similar to retinol dehydrogenase 161535e-38O
Contig/Assembly ProteinLOC522844similar to microsomal NAD+-dependent retinol dehydrogenase 41537e-38O
Contig/Assembly ProteinLOC538876similar to orphan short-chain dehydrogenase / reductase1244e-29O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHSD11B2hydroxysteroid 11-beta dehydrogenase 260.13e-11


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LVRM10043B09LVRM1_0043_B09.bCJ002060