[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-025205
Length:
506
Sequence:
[FASTA format sequence]
NAGTTGTACX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXCT
GGACACACCA GGTCAGGAGG CGCCATGGGG CGCTGGGCCT GGGTCCCCAG CCCCTGCCCC
CCACCCAGGC TGTCCCTGCT GCTGCTGCTG CTGCTGCTGC TGGTGCCTCG CGGGGCTCAG
CCCCAGGCTG GCAGGAACCA AACGGAAGCC CCAGCGCAAA AGGCCACAGT GACTCCTGGG
ACTCCCCTGA TCCCGGTAAC CTCGGCGACC CTCAGGCCCC CAGCCACGAG GGCTCCAAAG
GCAGAGGGAC CCCATGGTGG GCGGCTTACC CCCCTGCCCA GGGCAGCCCC CTCCAACAGC
AGCGCTGGAG GCACAGTGCT CACCGAGGCC GGGCAGCCCT GCAGGTTCCC CTTCCGTTAC
GGCGGCCGCA CGATCCACTC CTGCACTTCG GAGGGCAGCG CCCACAGGAA GTGGTGTGCC
ACGACTCACA ACTATGACCG GGACCGGGCT TGGGGCTACT GCGTGCAGGC CTCCACTCCC
TGGGAGGAGC CACCTGACCA GAGATACCCG TGCCTATGGA CAATACGTAC ATGGAGACCC
CCCGCACAAT CACCAAATTA CCCTGAGTCG AACATCTCGC ACTCCACGTG AACAAAATAT
GGATACGACC CCGTACGCCA CAAATACATA CAAAAGAATC CCTAACAATC ACCCTCGATG
GAACCATAGA CTAGGAAAGC AGGTATGAAA AAACAAAATG CCACCCCCCT AACATACCAA
AACTTAAATA ATTACG
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
HGFAC | HGF activator | 189 | 8e-49 | O | ||
F12 | coagulation factor XII (Hageman factor) | 66.2 | 1e-11 | O | ||
MMP2 | matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) | 62.8 | 1e-10 | |||
MMP9 | matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) | 58.9 | 2e-09 | |||
PLA2R1 | phospholipase A2 receptor 1, 180kDa | 58.2 | 4e-09 | |||
PLA2R1 | phospholipase A2 receptor 1, 180kDa | 58.2 | 4e-09 | |||
FN1 | fibronectin 1 | 57.4 | 6e-09 | |||
FN1 | fibronectin 1 | 57.4 | 6e-09 | |||
FN1 | fibronectin 1 | 57.4 | 6e-09 | |||
FN1 | fibronectin 1 | 57.4 | 6e-09 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
Hgfac | hepatocyte growth factor activator | 170 | 8e-43 | O | ||
Mmp2 | matrix metallopeptidase 2 | 63.5 | 1e-10 | |||
Igf2r | insulin-like growth factor 2 receptor | 61.6 | 4e-10 | |||
Mmp9 | matrix metallopeptidase 9 | 57.4 | 7e-09 | |||
Fn1 | fibronectin 1 | 57.4 | 7e-09 | |||
Pla2r1 | phospholipase A2 receptor 1 | 56.2 | 2e-08 | |||
Mrc2 | mannose receptor, C type 2 | 55.8 | 2e-08 | |||
Sel1h | Sel1 (suppressor of lin-12) 1 homolog (C. elegans) | 54.7 | 5e-08 | |||
F12 | coagulation factor XII (Hageman factor) | 54.7 | 5e-08 | O | ||
Gm767 | gene model 767, (NCBI) | 51.2 | 5e-07 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
HGFAC | HGF activator | 207 | 3e-54 | O | ||
HGFAC | HGF activator | 206 | 7e-54 | O | ||
HGFAC | HGF activator | 204 | 4e-53 | O | ||
LOC484067 | similar to Cation-independent mannose-6-phosphate receptor precursor (CI Man-6-P receptor) (CI-MPR) (M6PR) (Insulin-like growth factor II receptor) (300 kDa mannose 6-phosphate receptor) (MPR 300) (MPR300) (CD222 antigen) | 65.9 | 2e-11 | |||
MMP2 | matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) | 62.8 | 2e-10 | |||
LOC489090 | similar to Coagulation factor XII precursor (Hageman factor) (HAF) | 62 | 3e-10 | O | ||
MMP9 | matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) | 60.5 | 8e-10 | |||
FN1 | fibronectin 1 | 57.4 | 7e-09 | |||
LOC488367 | similar to phospholipase A2 receptor 1 isoform 1 precursor | 57.4 | 7e-09 | |||
ELSPBP1 | epididymal sperm binding protein 1 | 56.2 | 2e-08 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
F12 | coagulation factor XII | 65.1 | 3e-11 | O | ||
F12 | coagulation factor XII | 65.1 | 3e-11 | O | ||
F12 | coagulation factor XII | 65.1 | 3e-11 | O | ||
F12 | coagulation factor XII | 65.1 | 3e-11 | O | ||
IGF2R | insulin-like growth factor 2 receptor | 63.5 | 8e-11 | |||
MMP2 | matrix metalloproteinase 2 (72 KDa type IV collagenase) | 62.8 | 1e-10 | |||
MMP9 | matrix metalloproteinase 9 (gelatinase B, 92kDa matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) | 61.2 | 4e-10 | |||
LOC522297 | similar to epididymal sperm binding protein 1 | 58.9 | 2e-09 | |||
LOC616163 | similar to Lymphocyte antigen 75 precursor (DEC-205) (CD205 antigen) (gp200-MR6) | 58.5 | 3e-09 | |||
LOC407236 | DEC-205/CD205 protein | 58.2 | 3e-09 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
MMP-2 | gelatinase A | 63.5 | 3e-12 | |||
F12 | factor XII | 61.2 | 1e-11 | O | ||
LOC654325 | matrix metalloproteinase 9 | 58.2 | 1e-10 | |||
ELSPBP1 | epididymal sperm binding protein 1 | 57.4 | 2e-10 | |||
PB1 | seminal plasma protein pB1 | 52.4 | 7e-09 | O |
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