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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-025205

Length: 506

Sequence [FASTA format sequence]
NAGTTGTACX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXCT
GGACACACCA GGTCAGGAGG CGCCATGGGG CGCTGGGCCT GGGTCCCCAG CCCCTGCCCC
CCACCCAGGC TGTCCCTGCT GCTGCTGCTG CTGCTGCTGC TGGTGCCTCG CGGGGCTCAG
CCCCAGGCTG GCAGGAACCA AACGGAAGCC CCAGCGCAAA AGGCCACAGT GACTCCTGGG
ACTCCCCTGA TCCCGGTAAC CTCGGCGACC CTCAGGCCCC CAGCCACGAG GGCTCCAAAG
GCAGAGGGAC CCCATGGTGG GCGGCTTACC CCCCTGCCCA GGGCAGCCCC CTCCAACAGC
AGCGCTGGAG GCACAGTGCT CACCGAGGCC GGGCAGCCCT GCAGGTTCCC CTTCCGTTAC
GGCGGCCGCA CGATCCACTC CTGCACTTCG GAGGGCAGCG CCCACAGGAA GTGGTGTGCC
ACGACTCACA ACTATGACCG GGACCGGGCT TGGGGCTACT GCGTGCAGGC CTCCACTCCC
TGGGAGGAGC CACCTGACCA GAGATACCCG TGCCTATGGA CAATACGTAC ATGGAGACCC
CCCGCACAAT CACCAAATTA CCCTGAGTCG AACATCTCGC ACTCCACGTG AACAAAATAT
GGATACGACC CCGTACGCCA CAAATACATA CAAAAGAATC CCTAACAATC ACCCTCGATG
GAACCATAGA CTAGGAAAGC AGGTATGAAA AAACAAAATG CCACCCCCCT AACATACCAA
AACTTAAATA ATTACG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHGFACHGF activator1898e-49O
Contig/Assembly ProteinF12coagulation factor XII (Hageman factor)66.21e-11O
Contig/Assembly ProteinMMP2matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)62.81e-10
Contig/Assembly ProteinMMP9matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)58.92e-09
Contig/Assembly ProteinPLA2R1phospholipase A2 receptor 1, 180kDa58.24e-09
Contig/Assembly ProteinPLA2R1phospholipase A2 receptor 1, 180kDa58.24e-09
Contig/Assembly ProteinFN1fibronectin 157.46e-09
Contig/Assembly ProteinFN1fibronectin 157.46e-09
Contig/Assembly ProteinFN1fibronectin 157.46e-09
Contig/Assembly ProteinFN1fibronectin 157.46e-09


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHgfachepatocyte growth factor activator1708e-43O
Contig/Assembly ProteinMmp2matrix metallopeptidase 263.51e-10
Contig/Assembly ProteinIgf2rinsulin-like growth factor 2 receptor61.64e-10
Contig/Assembly ProteinMmp9matrix metallopeptidase 957.47e-09
Contig/Assembly ProteinFn1fibronectin 157.47e-09
Contig/Assembly ProteinPla2r1phospholipase A2 receptor 156.22e-08
Contig/Assembly ProteinMrc2mannose receptor, C type 255.82e-08
Contig/Assembly ProteinSel1hSel1 (suppressor of lin-12) 1 homolog (C. elegans)54.75e-08
Contig/Assembly ProteinF12coagulation factor XII (Hageman factor)54.75e-08O
Contig/Assembly ProteinGm767gene model 767, (NCBI)51.25e-07O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHGFACHGF activator2073e-54O
Contig/Assembly ProteinHGFACHGF activator2067e-54O
Contig/Assembly ProteinHGFACHGF activator2044e-53O
Contig/Assembly ProteinLOC484067similar to Cation-independent mannose-6-phosphate receptor precursor (CI Man-6-P receptor) (CI-MPR) (M6PR) (Insulin-like growth factor II receptor) (300 kDa mannose 6-phosphate receptor) (MPR 300) (MPR300) (CD222 antigen)65.92e-11
Contig/Assembly ProteinMMP2matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)62.82e-10
Contig/Assembly ProteinLOC489090similar to Coagulation factor XII precursor (Hageman factor) (HAF)623e-10O
Contig/Assembly ProteinMMP9matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)60.58e-10
Contig/Assembly ProteinFN1fibronectin 157.47e-09
Contig/Assembly ProteinLOC488367similar to phospholipase A2 receptor 1 isoform 1 precursor57.47e-09
Contig/Assembly ProteinELSPBP1epididymal sperm binding protein 156.22e-08


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinF12coagulation factor XII65.13e-11O
Contig/Assembly ProteinF12coagulation factor XII65.13e-11O
Contig/Assembly ProteinF12coagulation factor XII65.13e-11O
Contig/Assembly ProteinF12coagulation factor XII65.13e-11O
Contig/Assembly ProteinIGF2Rinsulin-like growth factor 2 receptor63.58e-11
Contig/Assembly ProteinMMP2matrix metalloproteinase 2 (72 KDa type IV collagenase)62.81e-10
Contig/Assembly ProteinMMP9matrix metalloproteinase 9 (gelatinase B, 92kDa matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)61.24e-10
Contig/Assembly ProteinLOC522297similar to epididymal sperm binding protein 158.92e-09
Contig/Assembly ProteinLOC616163similar to Lymphocyte antigen 75 precursor (DEC-205) (CD205 antigen) (gp200-MR6)58.53e-09
Contig/Assembly ProteinLOC407236DEC-205/CD205 protein58.23e-09


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMMP-2gelatinase A63.53e-12
Contig/Assembly ProteinF12factor XII61.21e-11O
Contig/Assembly ProteinLOC654325matrix metalloproteinase 958.21e-10
Contig/Assembly ProteinELSPBP1epididymal sperm binding protein 157.42e-10
Contig/Assembly ProteinPB1seminal plasma protein pB152.47e-09O


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LVRM10172B04LVRM1_0172_B04.bCJ004788