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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-026952

Length: 815

Sequence [FASTA format sequence]
NTTTTGGCTG TACTTGACAG TTTGTACXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX X
TGTGTCCCC ACCCCCCCCC CCGCCGCCTC CGCATCACCA
CCACCACCCC GACTACTACG AAAGACACCT CCGCCCAACC GTGAAGGACC GTCACTGACG
TCGTCTCCTA CCATGAGCAT CTGCCCATGC TGGGCCAGCG CCCCTGGGCC CCGGATAGCA
AGTGCAGCCG TGGATCTCTG TACACACGCT TTTCTGTACT GGTGGCTCTG CTCCTGGCTG
GACAAGCCCC CACCGCCTAC TTCCTGTACC CGCGGCACGG CCTGCTGGAC AACCTGACCG
TCACTTCTCT GAACTTGCGA CTGGAGAGCC TGCCTATGAC GCTCTCGGCG CCCCTCCTTG
CCTTTGACCT CGATGCGGAT TTCCGCCTCC ATGCTGATGC TAGCGCTGCC CTTGGAGAGC
CCGGAGCCTA TGCTCTGCTC CGCCTTTTAC AGCACCCTGA CCCGTGAGCT CTTGATGCAC
CTGCTCCTGA AGTCTGACCC CCTGAGATTG TACTCGAACC TGACAGGGAT CCTCACAGAG
CACCTGAATC ACCTCTGAAG CACCATGTAC CGTGTGTTCT GGAAGCTCTT TGATACCTGG
CTGCGTGCTT GGCTCTTGTT TGAAATGAGC AATATCTCTC TCGAGGAGAC ACCCTTTGAC
GTTCCGCCAA ATACCCACTG GAGACTGAGG ACCTGTCGTC CGGTCTGGGC GTGACCTTCC
ATGATCTCTG CCGAGTCATC CTGTAAGATC ATCCGACGCC ATCCCCCATC TCTGCGTGGT
CACAGCGTGT CTGCGACCCA GTCTCACTGC TTCCACCTAC TGCAACTTAT CACATGGGCC
TCTAGATTCT TCCGTCACAA CATCACTGAA CACGTCACTT CTCCTCAAAA TGCCAGTGAT
GAACGACTCA GGAAGGCCCT GCTGCCGCCC ACTCCTTACG CTACCAGGTT TCTTGTCCCA
GGGACCCCCT TGAGCGGCGT TGTTCCCTCG GGATGCCTGA CTTTACAGGT CGTGCTGGGG
AACATGCACT TGGATTTTGT GAGGACCTTA CTTTGGGTGT ACTAATTGAA AAACTCTCCA
ATTTTAAGCC TAGGTAATAA AATTTTAGTT AAAGGGTTAA CACCCCAAGC TTGCGCTAAA
TTGCTTCCGN TTATTTGAAA TTTACCCGAC CNGGTTTATT TGGTTTTAAT CGACCAGGGT
TTTGGCCCNC CCATTTTTTT ATTNCCCCCA CTTAGTTTTT TTAACCCCCC CCTACAAAAA
AAATTT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCD74CD74 molecule, major histocompatibility complex, class II invariant chain1085e-24O
Contig/Assembly ProteinCD74CD74 molecule, major histocompatibility complex, class II invariant chain1088e-45O
Contig/Assembly ProteinCD74CD74 molecule, major histocompatibility complex, class II invariant chain1086e-43O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCd74CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)97.86e-37O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC479329similar to HLA class II histocompatibility antigen, gamma chain (HLA-DR antigens associated invariant chain) (Ia antigen-associated invariant chain) (Ii) (p33) (CD74 antigen)1142e-43O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMGC127643similar to CD74 antigen isoform b1115e-49O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCD74CD74 antigen1184e-62O


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
MLN010022D01MLN01_0022_D01.b