[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-027234
Length:
1,213
Sequence:
[FASTA format sequence]
NNNGGCTTGG ACTATNACAG TTTGTACXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXT CATCATTGCT CTACAACTCC GAAGAGCAAC AGCTGAGACC
ACCTTGAGAA GAGCATGGTC CCAGGCCGAG TTCTGATGTG GGGGGCCCTC GCCCTGACCG
CCGTGATGAG CGCCTGTGGA GGTGAAGACA TTGCGGCCGA CCATGTTGCC TCCTATGGCT
TAAATGTCTA CCAGTCTTAC GGTCCCAGCG GCTATTATAC CCATGAATTT GATGGCGACG
AGGAATTCTA CGTGGACCTG GGGAAGAAGG AGACTGTCTG GCAGCTGCCT CTGTTTAGCA
AATTTAGAAG TTTTGACCCA CAGGGTGCAC TGAGGAACAT AGCTACGGCA AAACATAATT
TGAACTGATT AAACGTTCCA ACAACACCGC GGCTGTCAAT CAGGTTCCTG AGGTGACTGT
GTTTCCCAAG TCTCCAGTGA TGCTGGGTCA GCCCAACACC CTCATCTGTC ATGTGGACAA
CATCTTTCCT CCTGTGATCA ACATCACGTG GTTGAAGAAC GGGCACTCTG TCACAGAAGG
TTTTTCTGAG ACCAGCTTCC TCTCCAAAAA TGATCATTCC CTCCTCAAGA TCAGTTATCT
CACCTTCCTC CCTTCTGATG ATGATTTTTA TGACTGCAAA GTGGAGCACT GGGGCCTGGA
TAAGCCACTT CTGAAACACT GGGAACCTGA GATTCCAGCC CCCATGTCAG AGCTGACAGA
GACAGTGGTC TGCGCCCTGG GATTGATCGT GGGCCTTGTG GGCATCGTGG TGGGCACTGT
CTTCATCATT CAAGGCCTGC GCTCAGGTGG TCCCTCTAGA CACCAAGGGT CCTTGTGAGT
CACACTCCAG AAGGGAAGGT GCACTGCCCG CCTACAAGAG CTGAAGAGTG GATGTGCTCA
ACGACCTAGA ACTATTTTCT GGCCAAATTC ATCATATACC TTCTCTCTTT CTACATTCTT
CTTCTCACCT CTTCTCTGGA AACTTAGGTG CTGGGTCATC TCAGAATTCT ATGCCCCTGG
GATCCTCTTC CTGACCCTCC AGGTTTTTTT TCTTTTCTCA ATGTTTACCG TTATGGGATC
TCTGAAATTC CCCATCCGGC TACGGATTCC TCGGGACCCT TAATAATTAG TACATGGAAC
CATAAATCCC TCCTGAGGTT TTGTCCTGAA AAAAAAAAAA AAAAAAAAGG CCATTGTGCC
CAACTCAGGT CCGGCCTCTA AAATTTCTTG AGGGGCCAAC TAACCGATCC GTTTTTTTTA
AAGGGTCCTA TAGT
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 236 | e-104 | O | ||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 236 | e-104 | O | ||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 236 | e-104 | O | ||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 236 | e-104 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 230 | 1e-99 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 229 | 3e-99 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 229 | 3e-99 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 229 | 3e-99 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 229 | 3e-99 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 229 | 3e-99 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
H2-Aa | histocompatibility 2, class II antigen A, alpha | 215 | 3e-87 | O | ||
H2-Oa | histocompatibility 2, O region alpha locus | 160 | 1e-55 | O | ||
H2-Ea | histocompatibility 2, class II antigen E alpha | 155 | 2e-50 | O | ||
H2-DMa | histocompatibility 2, class II, locus DMa | 68.9 | 1e-11 | O | ||
H2-Ob | histocompatibility 2, O region beta locus | 68.6 | 1e-11 | O | ||
B2m | beta-2 microglobulin | 65.1 | 1e-10 | O | ||
A130038H09Rik | RIKEN cDNA A130038H09 gene | 62 | 1e-09 | O | ||
H2-DMb2 | histocompatibility 2, class II, locus Mb2 | 62 | 1e-09 | O | ||
H2-DMb1 | histocompatibility 2, class II, locus Mb1 | 62 | 1e-09 | O | ||
H2-Eb1 | histocompatibility 2, class II antigen E beta | 61.6 | 2e-09 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
dqa1 | MHC class II DLA DQalpha chain | 232 | e-101 | O | ||
LOC474869 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 162 | 4e-55 | O | ||
DLA-DRA1 | MHC class II DR alpha chain | 160 | 9e-54 | O | ||
LOC474869 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 80.9 | 6e-16 | O | ||
DLA-DQB1 | MHC class II DLA-DQ beta chain b1 domain | 67 | 4e-11 | |||
HLA-DMA | major histocompatibility complex, class II, DM alpha | 65.5 | 1e-11 | |||
HLA-DMA | major histocompatibility complex, class II, DM alpha | 65.5 | 1e-10 | O | ||
DLA-DRB1 | MHC class II DLA DRB1 beta chain | 65.1 | 1e-10 | O | ||
LOC478284 | similar to beta-2-microglobulin precursor | 63.2 | 5e-10 | O | ||
LOC478284 | similar to beta-2-microglobulin precursor | 63.2 | 5e-10 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
BOLA-DQA1 | histocompatibility complex, class II, DQ alpha, type 1 | 246 | e-105 | O | ||
BOLA-DQA | major histocompatibility complex, class II, DQ alpha | 239 | 9e-99 | O | ||
BOLA-DQA2 | major histocompatibility complex, class II, DQ alpha 1 | 197 | 2e-88 | O | ||
BOLA-DYA | major histocompatibility complex, class II, DY alpha | 192 | 6e-49 | O | ||
LOC525727 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 167 | 8e-59 | O | ||
LOC525727 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 165 | 4e-58 | O | ||
BOLA-DRA | major histocompatibility complex, class II, DR alpha | 162 | 9e-54 | O | ||
B2M | beta-2-microglobulin | 68.9 | 7e-12 | O | ||
BLA-DQB | MHC class II antigen | 62.8 | 5e-10 | O | ||
BOLA-DOB | major histocompatibility complex, class II, DO beta | 62.4 | 7e-10 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
SLA-DMA | SLA-DM alpha chain | 71.6 | 3e-14 | O | ||
B2M | beta 2-microglobulin | 68.9 | 2e-13 | O |
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