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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-027234

Length: 1,213

Sequence:  [FASTA format sequence]
NNNGGCTTGG ACTATNACAG TTTGTACXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXT CATCATTGCT CTACAACTCC GAAGAGCAAC AGCTGAGACC
ACCTTGAGAA GAGCATGGTC CCAGGCCGAG TTCTGATGTG GGGGGCCCTC GCCCTGACCG
CCGTGATGAG CGCCTGTGGA GGTGAAGACA TTGCGGCCGA CCATGTTGCC TCCTATGGCT
TAAATGTCTA CCAGTCTTAC GGTCCCAGCG GCTATTATAC CCATGAATTT GATGGCGACG
AGGAATTCTA CGTGGACCTG GGGAAGAAGG AGACTGTCTG GCAGCTGCCT CTGTTTAGCA
AATTTAGAAG TTTTGACCCA CAGGGTGCAC TGAGGAACAT AGCTACGGCA AAACATAATT
TGAACTGATT AAACGTTCCA ACAACACCGC GGCTGTCAAT CAGGTTCCTG AGGTGACTGT
GTTTCCCAAG TCTCCAGTGA TGCTGGGTCA GCCCAACACC CTCATCTGTC ATGTGGACAA
CATCTTTCCT CCTGTGATCA ACATCACGTG GTTGAAGAAC GGGCACTCTG TCACAGAAGG
TTTTTCTGAG ACCAGCTTCC TCTCCAAAAA TGATCATTCC CTCCTCAAGA TCAGTTATCT
CACCTTCCTC CCTTCTGATG ATGATTTTTA TGACTGCAAA GTGGAGCACT GGGGCCTGGA
TAAGCCACTT CTGAAACACT GGGAACCTGA GATTCCAGCC CCCATGTCAG AGCTGACAGA
GACAGTGGTC TGCGCCCTGG GATTGATCGT GGGCCTTGTG GGCATCGTGG TGGGCACTGT
CTTCATCATT CAAGGCCTGC GCTCAGGTGG TCCCTCTAGA CACCAAGGGT CCTTGTGAGT
CACACTCCAG AAGGGAAGGT GCACTGCCCG CCTACAAGAG CTGAAGAGTG GATGTGCTCA
ACGACCTAGA ACTATTTTCT GGCCAAATTC ATCATATACC TTCTCTCTTT CTACATTCTT
CTTCTCACCT CTTCTCTGGA AACTTAGGTG CTGGGTCATC TCAGAATTCT ATGCCCCTGG
GATCCTCTTC CTGACCCTCC AGGTTTTTTT TCTTTTCTCA ATGTTTACCG TTATGGGATC
TCTGAAATTC CCCATCCGGC TACGGATTCC TCGGGACCCT TAATAATTAG TACATGGAAC
CATAAATCCC TCCTGAGGTT TTGTCCTGAA AAAAAAAAAA AAAAAAAAGG CCATTGTGCC
CAACTCAGGT CCGGCCTCTA AAATTTCTTG AGGGGCCAAC TAACCGATCC GTTTTTTTTA
AAGGGTCCTA TAGT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		LOC650946	similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)	236	e-104	O
		LOC650946	similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)	236	e-104	O
		LOC650946	similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)	236	e-104	O
		LOC650946	similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)	236	e-104	O
		HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	230	1e-99	O
		HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	229	3e-99	O
		HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	229	3e-99	O
		HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	229	3e-99	O
		HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	229	3e-99	O
		HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	229	3e-99	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		H2-Aa	histocompatibility 2, class II antigen A, alpha	215	3e-87	O
		H2-Oa	histocompatibility 2, O region alpha locus	160	1e-55	O
		H2-Ea	histocompatibility 2, class II antigen E alpha	155	2e-50	O
		H2-DMa	histocompatibility 2, class II, locus DMa	68.9	1e-11	O
		H2-Ob	histocompatibility 2, O region beta locus	68.6	1e-11	O
		B2m	beta-2 microglobulin	65.1	1e-10	O
		A130038H09Rik	RIKEN cDNA A130038H09 gene	62	1e-09	O
		H2-DMb2	histocompatibility 2, class II, locus Mb2	62	1e-09	O
		H2-DMb1	histocompatibility 2, class II, locus Mb1	62	1e-09	O
		H2-Eb1	histocompatibility 2, class II antigen E beta	61.6	2e-09	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		dqa1	MHC class II DLA DQalpha chain	232	e-101	O
		LOC474869	similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)	162	4e-55	O
		DLA-DRA1	MHC class II DR alpha chain	160	9e-54	O
		LOC474869	similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)	80.9	6e-16	O
		DLA-DQB1	MHC class II DLA-DQ beta chain b1 domain	67	4e-11
		HLA-DMA	major histocompatibility complex, class II, DM alpha	65.5	1e-11
		HLA-DMA	major histocompatibility complex, class II, DM alpha	65.5	1e-10	O
		DLA-DRB1	MHC class II DLA DRB1 beta chain	65.1	1e-10	O
		LOC478284	similar to beta-2-microglobulin precursor	63.2	5e-10	O
		LOC478284	similar to beta-2-microglobulin precursor	63.2	5e-10	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		BOLA-DQA1	histocompatibility complex, class II, DQ alpha, type 1	246	e-105	O
		BOLA-DQA	major histocompatibility complex, class II, DQ alpha	239	9e-99	O
		BOLA-DQA2	major histocompatibility complex, class II, DQ alpha 1	197	2e-88	O
		BOLA-DYA	major histocompatibility complex, class II, DY alpha	192	6e-49	O
		LOC525727	similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)	167	8e-59	O
		LOC525727	similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)	165	4e-58	O
		BOLA-DRA	major histocompatibility complex, class II, DR alpha	162	9e-54	O
		B2M	beta-2-microglobulin	68.9	7e-12	O
		BLA-DQB	MHC class II antigen	62.8	5e-10	O
		BOLA-DOB	major histocompatibility complex, class II, DO beta	62.4	7e-10	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		SLA-DMA	SLA-DM alpha chain	71.6	3e-14	O
		B2M	beta 2-microglobulin	68.9	2e-13	O