[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-027492
Length:
983
Sequence:
[FASTA format sequence]
NNNNGGCTTG TGACTTNACX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XGAGTGGGAG CTGTGTTGAC TACCATTACT TCTTCGTTTG
TCCTCAATTA TGTCTGGGAT GGTGGCTCTG CGGCTCCCCA GAGGCCTTTG GACAGCGGCC
TTGACGGTGA TGCTGGTGGT GCTGGGTGCT CCTTTGGCTG AGGGCAGAGA CTCTCCACAG
GATTTCGTGT ACCAGTTTAA GGGCGAGTGC TACATCTTCA ACGGAACGCA GCGGGTGCGG
CACGTGACCA GATACATCTA CAACCAGAAC GAGCACGTGC GCTACGACAG CGACGTGGGT
GGACTTCCAG GAGATGACTC CGCTAGGACA GCCTGACAAA CACTACAGGA ATGGCGTGAT
GGTCGGTCTG ACAAAATATT GTGCCCCTCA TTCGATAGTG CTGATGCTAG CCCACACGTT
CCTGAATAGG TTTAGTATGC ACCACATAAA CGAAAGAAAC TCCGAGGTCA CTGGAGATGA
AAACGATGAG TATCGCATCA AAAGTCAGCC TGACTCACCC AACTGTTAAA TGCATACATG
ATTGGCTCAA ATAACTACTT CAAAGAAAGT TTTTGAGACC TTGACCGTAG CCAAAAATGG
AGGTCTTGTT TTAGACTTAC CAAAACCAAA CGATGCCCTG AATATGATTC AAAAATCACC
GATTCTACCG CCGAATTGCA CCGAAAATCT GACCAGGAGC ACATTGATTC AGATTATAAA
CGTGTACCTG CTTGAATAAC ATTAATATGC TTAAAACAAA CAATTCTCTC CGCAAAGTTA
GCATGAAGTG AAACTAGAAT TGATGGCAGA AAATCAATTT TAGATAATAA GCTGCAACAT
GACACAATCC AATCTATAAC ATAAACTTAT TAAAAATTTA TAACGATAGG TGAAATGTCC
TAAAATAACC TTTCCTCAAA AAAAAATCGG ATTCTACTAA AAAAAACGCT TTCCTCTAAC
TACAGTACTA GCATCTGAAA ACTATCTCCC CCCCTATTTT ATCTATAAAA TCTTCAAAAA
ATTACAAACC CTGATCTCTC GGAAAAAAAC ATTAACTCCA CACATAATAT TAAAGCCCCT
GTTTTCAGTT GCCCACCCCC TACTAATAAC CATAGGCCAA CACCGTTCCA TCTTTAAGAC
CCCACTTTAT TAAAACAAGA CCTCCCCTTA ATTTTACGAA AACTCTATAT TTTCAAACAA
CCCGCGCTAA AGCACTCTAA AACGCAAATA ATCAAACTTA ACTCCCTAAC ACAAAAAATA
AAATTCTTAG CACCATTGCA TTATAAACTT ACACTCTCAA
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
HLA-DQB2 | major histocompatibility complex, class II, DQ beta 2 | 104 | 1e-22 | O | ||
HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 | 102 | 5e-22 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 83.6 | 2e-16 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 83.6 | 2e-16 | O | ||
HLA-DRB1 | major histocompatibility complex, class II, DR beta 1 | 82.4 | 5e-16 | O | ||
HLA-DRB5 | major histocompatibility complex, class II, DR beta 5 | 80.1 | 3e-15 | O | ||
LOC654155 | similar to HLA class II histocompatibility antigen, DR-W53 beta chain precursor | 79.3 | 4e-15 | O | ||
HLA-DRB4 | major histocompatibility complex, class II, DR beta 4 | 79.3 | 4e-15 | O | ||
HLA-DRB3 | major histocompatibility complex, class II, DR beta 3 | 76.6 | 3e-14 | O | ||
RPL5 | ribosomal protein L5 | 67.4 | 1e-14 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 | 93.6 | 3e-19 | O | ||
A130038H09Rik | RIKEN cDNA A130038H09 gene | 72.8 | 5e-13 | O | ||
H2-Ob | histocompatibility 2, O region beta locus | 70.1 | 3e-12 | O | ||
H2-Eb1 | histocompatibility 2, class II antigen E beta | 69.7 | 4e-12 | O | ||
LOC665407 | similar to 60S ribosomal protein L5 | 62.8 | 4e-12 | O | ||
Rpl5 | ribosomal protein L5 | 62.8 | 4e-13 | O | ||
LOC668936 | similar to 60S ribosomal protein L5 | 58.9 | 6e-12 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
DLA-DQB1 | MHC class II DLA-DQ beta chain b1 domain | 113 | 2e-25 | O | ||
DLA-DRB1 | MHC class II DLA DRB1 beta chain | 78.6 | 9e-15 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 72.4 | 6e-13 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 72.4 | 6e-13 | O | ||
LOC479949 | similar to 60S ribosomal protein L5 | 67.4 | 2e-14 | O | ||
LOC608750 | similar to ribosomal protein L5 | 65.5 | 8e-11 | O | ||
LOC608750 | similar to ribosomal protein L5 | 65.5 | 8e-11 | O | ||
LOC608750 | similar to ribosomal protein L5 | 65.5 | 8e-11 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
BLA-DQB | MHC class II antigen | 116 | 1e-27 | O | ||
BOLA-DQB | major histocompatibility complex, class II, DQ beta | 116 | 2e-26 | O | ||
BoLA-DRB3 | major histocompatibility complex, class II, DRB3 | 77.8 | 1e-14 | O | ||
BOLA-DYB | major histocompatibility complex, class II, DY beta | 71.6 | 9e-13 | O | ||
LOC538700 | similar to major histocompatibility complex, class II, DR beta 5 precursor | 70.1 | 3e-12 | O | ||
BOLA-DOB | major histocompatibility complex, class II, DO beta | 69.3 | 4e-12 | O | ||
RPL5 | ribosomal protein L5 | 67.4 | 1e-14 | O | ||
LOC510333 | similar to 60S ribosomal protein L5 | 58.5 | 2e-10 | O | ||
LOC510333 | similar to 60S ribosomal protein L5 | 58.5 | 2e-10 | O |
Locus | Definition | Score | E value | FL |
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