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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-027492

Length: 983

Sequence [FASTA format sequence]
NNNNGGCTTG TGACTTNACX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX X
GAGTGGGAG CTGTGTTGAC TACCATTACT TCTTCGTTTG
TCCTCAATTA TGTCTGGGAT GGTGGCTCTG CGGCTCCCCA GAGGCCTTTG GACAGCGGCC
TTGACGGTGA TGCTGGTGGT GCTGGGTGCT CCTTTGGCTG AGGGCAGAGA CTCTCCACAG
GATTTCGTGT ACCAGTTTAA GGGCGAGTGC TACATCTTCA ACGGAACGCA GCGGGTGCGG
CACGTGACCA GATACATCTA CAACCAGAAC GAGCACGTGC GCTACGACAG CGACGTGGGT
GGACTTCCAG GAGATGACTC CGCTAGGACA GCCTGACAAA CACTACAGGA ATGGCGTGAT
GGTCGGTCTG ACAAAATATT GTGCCCCTCA TTCGATAGTG CTGATGCTAG CCCACACGTT
CCTGAATAGG TTTAGTATGC ACCACATAAA CGAAAGAAAC TCCGAGGTCA CTGGAGATGA
AAACGATGAG TATCGCATCA AAAGTCAGCC TGACTCACCC AACTGTTAAA TGCATACATG
ATTGGCTCAA ATAACTACTT CAAAGAAAGT TTTTGAGACC TTGACCGTAG CCAAAAATGG
AGGTCTTGTT TTAGACTTAC CAAAACCAAA CGATGCCCTG AATATGATTC AAAAATCACC
GATTCTACCG CCGAATTGCA CCGAAAATCT GACCAGGAGC ACATTGATTC AGATTATAAA
CGTGTACCTG CTTGAATAAC ATTAATATGC TTAAAACAAA CAATTCTCTC CGCAAAGTTA
GCATGAAGTG AAACTAGAAT TGATGGCAGA AAATCAATTT TAGATAATAA GCTGCAACAT
GACACAATCC AATCTATAAC ATAAACTTAT TAAAAATTTA TAACGATAGG TGAAATGTCC
TAAAATAACC TTTCCTCAAA AAAAAATCGG ATTCTACTAA AAAAAACGCT TTCCTCTAAC
TACAGTACTA GCATCTGAAA ACTATCTCCC CCCCTATTTT ATCTATAAAA TCTTCAAAAA
ATTACAAACC CTGATCTCTC GGAAAAAAAC ATTAACTCCA CACATAATAT TAAAGCCCCT
GTTTTCAGTT GCCCACCCCC TACTAATAAC CATAGGCCAA CACCGTTCCA TCTTTAAGAC
CCCACTTTAT TAAAACAAGA CCTCCCCTTA ATTTTACGAA AACTCTATAT TTTCAAACAA
CCCGCGCTAA AGCACTCTAA AACGCAAATA ATCAAACTTA ACTCCCTAAC ACAAAAAATA
AAATTCTTAG CACCATTGCA TTATAAACTT ACACTCTCAA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DQB2major histocompatibility complex, class II, DQ beta 21041e-22O
Contig/Assembly ProteinHLA-DQB1major histocompatibility complex, class II, DQ beta 11025e-22O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)83.62e-16O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)83.62e-16O
Contig/Assembly ProteinHLA-DRB1major histocompatibility complex, class II, DR beta 182.45e-16O
Contig/Assembly ProteinHLA-DRB5major histocompatibility complex, class II, DR beta 580.13e-15O
Contig/Assembly ProteinLOC654155similar to HLA class II histocompatibility antigen, DR-W53 beta chain precursor79.34e-15O
Contig/Assembly ProteinHLA-DRB4major histocompatibility complex, class II, DR beta 479.34e-15O
Contig/Assembly ProteinHLA-DRB3major histocompatibility complex, class II, DR beta 376.63e-14O
Contig/Assembly ProteinRPL5ribosomal protein L567.41e-14O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 193.63e-19O
Contig/Assembly ProteinA130038H09RikRIKEN cDNA A130038H09 gene72.85e-13O
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus70.13e-12O
Contig/Assembly ProteinH2-Eb1histocompatibility 2, class II antigen E beta69.74e-12O
Contig/Assembly ProteinLOC665407similar to 60S ribosomal protein L562.84e-12O
Contig/Assembly ProteinRpl5ribosomal protein L562.84e-13O
Contig/Assembly ProteinLOC668936similar to 60S ribosomal protein L558.96e-12


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDLA-DQB1MHC class II DLA-DQ beta chain b1 domain1132e-25O
Contig/Assembly ProteinDLA-DRB1MHC class II DLA DRB1 beta chain78.69e-15O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta72.46e-13O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta72.46e-13O
Contig/Assembly ProteinLOC479949similar to 60S ribosomal protein L567.42e-14O
Contig/Assembly ProteinLOC608750similar to ribosomal protein L565.58e-11O
Contig/Assembly ProteinLOC608750similar to ribosomal protein L565.58e-11O
Contig/Assembly ProteinLOC608750similar to ribosomal protein L565.58e-11O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBLA-DQBMHC class II antigen1161e-27O
Contig/Assembly ProteinBOLA-DQBmajor histocompatibility complex, class II, DQ beta1162e-26O
Contig/Assembly ProteinBoLA-DRB3major histocompatibility complex, class II, DRB377.81e-14O
Contig/Assembly ProteinBOLA-DYBmajor histocompatibility complex, class II, DY beta71.69e-13O
Contig/Assembly ProteinLOC538700similar to major histocompatibility complex, class II, DR beta 5 precursor70.13e-12O
Contig/Assembly ProteinBOLA-DOBmajor histocompatibility complex, class II, DO beta69.34e-12O
Contig/Assembly ProteinRPL5ribosomal protein L567.41e-14O
Contig/Assembly ProteinLOC510333similar to 60S ribosomal protein L558.52e-10O
Contig/Assembly ProteinLOC510333similar to 60S ribosomal protein L558.52e-10O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
MLN010038A04MLN01_0038_A04.bCJ010576 AK346688