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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-027815

Length: 1,085

Sequence [FASTA format sequence]
NNTTTGCATG GACTATNACX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX X
TGGGATTTG GAGGCTCAAG AAGAGATTCT GCATCAGGAA
GGCCACAGCA TGGGTGTGTA CGACATTGCC TTCCATCAAG ATGGCTCTTT GGCTGGCACC
GGGGGACTGG ATGCATTTGG TCGAGTTTGG GACCTGCGCA CGGGACGTTG TATCATGTTC
CTCGAAGGCC ACCTGAAGGA GATCTATGGA ATAAATTTCT CCCCCAATGG CTACCACATT
GCAACTGGCA GTGGTGACAA CACCTGCAAA GTGTGGGACC TTCGGCAACG GCGTTGTGTC
TATACCATTC CTGCCCATCA GAACTTAGTA ACTGGTGTCA AGTTTGAGCC TATCCATGGG
AATTTCTTGC TCACTGGTGC CTATGATAAC ACAGCCAAGA TCTGGACCCA CCCAGGCTGG
TCCCCACTGA AGACCTTGGC CGGCCATGAA GGCAAAGTGA TGGGCCTAGA CATTTCTTCC
GATGGGCAGC TCATAGCCAC TTGTTCATAT GACAGGACCT TCAAGCTCTG GATGGCCGAA
TAGGCAGGAC CATAGAAAAA GGACGCTACC TCCCTCTCAC AGAGCCATTT TCAAAAGAAA
GGAATCGATG TGTTTTGTTC TATCATGTTT TTGCCAGTTA CCATGCATAG ATCCGCAAAA
GAGTTGGATT TCCACGTCAG CTCCCACTGT AGGCAGGCCG CCCCCCCCTT GGGTGTTGAT
GATAAACCCC TTTCATGGTT GAAATTTTAA TTTTCATCTT CAGGCCCTGC CACGAACTGT
GTGGACATTG TGTTTCTTAA TCCTTTGTTT GGATGCCCTG TTGCCTCCCT CACAGTACTC
AGGATTCCAT TTTTGATTCT TGAAACTTGA CTTTCCATTA CATGGTACAT GCTTCAGGAC
CACACGTGAC CCAGAGAGCA AGGGCTGGGC TATAGTCTGA GCAGAGAGGC ACATCTCACC
ACGCGCTGGC TAACAGTGGC TGGCAAACCC AGACCCTGAN AGTGGAAGGT GAAAGGTAAA
CCACACTATG CTCGGGTTTG TATTGAACTT TTTACTCCTC TGGCCAGTTC CCTGGATGCT
CATGCCCCCG AACCTCAAAT AACATTTCCC CGTCCATATG GGTTCCATTC CTTGGAATTT
GGCACCTTGT TTTACCAAAA CGGGCCCTGG GAAAATCATG AAATTTTTAA CCCAAAAAAA
AAAAAAAAAA AAGGCACTGT TCTACTCAGT CGG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPRPF4PRP4 pre-mRNA processing factor 4 homolog (yeast)373e-103
Contig/Assembly ProteinWDR69WD repeat domain 691127e-25
Contig/Assembly ProteinGNB4guanine nucleotide binding protein (G protein), beta polypeptide 41095e-24
Contig/Assembly ProteinWDR5WD repeat domain 51055e-23
Contig/Assembly ProteinWDR5WD repeat domain 51055e-23
Contig/Assembly ProteinWDR5BWD repeat domain 5B1057e-23
Contig/Assembly ProteinGNB2guanine nucleotide binding protein (G protein), beta polypeptide 21057e-23
Contig/Assembly ProteinGNB1guanine nucleotide binding protein (G protein), beta polypeptide 11059e-23
Contig/Assembly ProteinTAF5TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa1011e-21
Contig/Assembly ProteinGNB5guanine nucleotide binding protein (G protein), beta 599.84e-21


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPrpf4PRP4 pre-mRNA processing factor 4 homolog (yeast)371e-103
Contig/Assembly ProteinGnb4guanine nucleotide binding protein, beta 41073e-23
Contig/Assembly ProteinWdr5WD repeat domain 51056e-23
Contig/Assembly ProteinGnb1guanine nucleotide binding protein, beta 11051e-22
Contig/Assembly ProteinGnb2guanine nucleotide binding protein, beta 21058e-23
Contig/Assembly ProteinWdr5bWD repeat domain 5B1041e-22
Contig/Assembly ProteinTaf5TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor1011e-21
Contig/Assembly Protein4930563E19RikRIKEN cDNA 4930563E19 gene1003e-21
Contig/Assembly ProteinGnb5guanine nucleotide binding protein, beta 599.46e-21
Contig/Assembly ProteinGnb5guanine nucleotide binding protein, beta 599.46e-21


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC474807similar to PRP4 pre-mRNA processing factor 4 homolog373e-103
Contig/Assembly ProteinLOC488087similar to guanine nucleotide-binding protein, beta-4 subunit1095e-24
Contig/Assembly ProteinLOC477397similar to CG7568-PA1081e-23
Contig/Assembly ProteinLOC479733similar to guanine nucleotide-binding protein, beta 21058e-23
Contig/Assembly ProteinLOC479733similar to guanine nucleotide-binding protein, beta 21058e-23
Contig/Assembly ProteinLOC479733similar to guanine nucleotide-binding protein, beta 21058e-23
Contig/Assembly ProteinLOC479733similar to guanine nucleotide-binding protein, beta 21058e-23
Contig/Assembly ProteinLOC479733similar to guanine nucleotide-binding protein, beta 21058e-23
Contig/Assembly ProteinLOC479733similar to guanine nucleotide-binding protein, beta 21058e-23
Contig/Assembly ProteinGNB1guanine nucleotide binding protein (G protein), beta polypeptide 11051e-22


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMGC129043similar to U4/U6 small nuclear ribonucleoprotein Prp4 (U4/U6 snRNP 60 kDa protein) (WD splicing factor Prp4) (hPrp4)373e-103
Contig/Assembly ProteinLOC530118similar to CG7568-PA1132e-25
Contig/Assembly ProteinLOC525962similar to guanine nucleotide-binding protein, beta-4 subunit1094e-24
Contig/Assembly ProteinGNB2guanine nucleotide binding protein (G protein),beta polypeptide 21056e-23
Contig/Assembly ProteinGNB2guanine nucleotide binding protein (G protein),beta polypeptide 21056e-23
Contig/Assembly ProteinGNB2guanine nucleotide binding protein (G protein),beta polypeptide 21056e-23
Contig/Assembly ProteinGNB2guanine nucleotide binding protein (G protein),beta polypeptide 21056e-23
Contig/Assembly ProteinGNB2guanine nucleotide binding protein (G protein),beta polypeptide 21056e-23
Contig/Assembly ProteinGNB1GNB1 protein1058e-23
Contig/Assembly ProteinLOC516001similar to TBP-associated factor 51019e-22


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPAFAH1B1platelet-activating factor acetylhydrolase Ib-alpha subunit94.73e-21
Contig/Assembly ProteinGNB2L1G-beta like protein84.35e-18
Contig/Assembly ProteinFZR1fizzy/cell division cycle 20 related 156.21e-09


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
MLN010049F01MLN01_0049_F01.bCJ011460