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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-030108

Length: 951

Sequence [FASTA format sequence]
GGCCXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXX
TT GGCCTACTGG AAGGAAGAGA TGCTGAGACT
GCCCGGAACC GCAGCGGAGG AAATTTGGTC CTGAAACCCC CTCTTAATCC CGACTGCTGG
GCCCAAGAAC TTGGACATCC TTACGTGCAG TTTGCTCACC CTCTGGCTGT GCCATGGGCC
CAGGATTAAA AAAAAAAAAA AAAAAAAAAA GGAATCCTGG TTGAGTAGAG CCCCATGAGA
GACACGGGAT AACCAGCTGA CTGCATTCCA GGATCTGTGC GCGGCAGAGG ACCACGGCTG
CGAGCAACTC TGCGTGAACC TGCTGGGCTC CTTTGTGTGC CAGTGCTACG GGGGCTACAC
CCTGGCGGAG GACGGGAAAC GGTGCGTGGC TGTGGACTAC TGTGCCTCAG AAAACCACGG
ATGCGAACAC GAGTGTGTAA ATGCTGACAC CTCCTACGTC TGCCGGTGCC CTAAAGGATT
TGCTCTGAAC CCAGATAAGA AAACATGTGC AAAAATAGAC CACTGCGCGT CACCTAACCA
CGGCTGCCAG CACGAGTGTG TCAACACAGA TGATTCCTAC TTCTGCCGCT GCCTAAAAGG
CTTTACTCTG AATCCAGATC AGAAAACCTG TAGAAGGATC AATTACTGTG CGCTGAACAA
ACCAGGCTGT GAGCACGAAT GCATCAACAC GGAGGAGGGC CACTACTGCC GCTGTCGCCG
GGGCTACACG CTGGACCCCA ACGGCAAGAC CTGCAGCCGG GTGGATCACT GCGCGGAGCA
AGACCACGGC TGCGAGCAGC TGTGTCTGAA CACCGAGGAC TCCTTCGTGT GCCAGTGCTC
GGAAGGCTTC CTCATCAACG AGGACCTCAA GACCTGCTCC CCGGGTGGAT TACTGCCTGC
TGAGCGACCA CCGGTTGCGA ATACTCCTGC GTCAACACGG ACAGATCCTT CGCCTGCCAG
TGTCCTGAGG GGGATGTGCT CCCCAGTGGA TGCAAGACCT GGTGCCAATT TGAATTCTTG
GGGGTTTGGG GGAACCATGG GTTGTGAAAC ATTCCTTGGG GTAAACAGGG GGGAAGCTTC
TTTTCTGGGG GCCGAATGTT TTTAAAAGGG TATATAACCT CCCGGGAAAA AAAGGGGGAA
AAAACCTGGG CAAAAAAAAT AAGGTTTTTT TTTTTTGGGG TTTTTGAA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMATN2matrilin 2421e-127
Contig/Assembly ProteinMATN2matrilin 2421e-127
Contig/Assembly ProteinMATN3matrilin 31723e-43
Contig/Assembly ProteinMEGF6multiple EGF-like-domains 61662e-41
Contig/Assembly ProteinMEGF6multiple EGF-like-domains 61662e-41
Contig/Assembly ProteinMEGF6multiple EGF-like-domains 61662e-41
Contig/Assembly ProteinSCUBE3signal peptide, CUB domain, EGF-like 31632e-42O
Contig/Assembly ProteinFBN2fibrillin 2 (congenital contractural arachnodactyly)1619e-40
Contig/Assembly ProteinFBN3fibrillin 31562e-38
Contig/Assembly ProteinSCUBE1signal peptide, CUB domain, EGF-like 11541e-37


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMatn2matrilin 2417e-125
Contig/Assembly ProteinMatn4matrilin 41841e-46
Contig/Assembly Protein6130401L20RikRIKEN cDNA 6130401L20 gene1757e-44
Contig/Assembly Protein6130401L20RikRIKEN cDNA 6130401L20 gene1757e-44
Contig/Assembly ProteinMegf6multiple EGF-like-domains 61755e-45
Contig/Assembly Protein6130401L20RikRIKEN cDNA 6130401L20 gene1757e-44
Contig/Assembly ProteinMegf6multiple EGF-like-domains 61755e-45
Contig/Assembly Protein6130401L20RikRIKEN cDNA 6130401L20 gene1757e-44
Contig/Assembly Protein6130401L20RikRIKEN cDNA 6130401L20 gene1757e-44
Contig/Assembly ProteinMegf6multiple EGF-like-domains 61748e-45


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC491431similar to matrilin 2 isoform a precursor426e-127
Contig/Assembly ProteinLOC485891similar to Matrilin-4 precursor1749e-44
Contig/Assembly ProteinLOC482985similar to matrilin 3 precursor1717e-43
Contig/Assembly ProteinLOC489619similar to EGF-like-domain, multiple 31695e-42
Contig/Assembly ProteinLOC485382similar to CEGP1 protein1641e-40
Contig/Assembly ProteinLOC485382similar to CEGP1 protein1641e-40
Contig/Assembly ProteinLOC481491similar to fibrillin 2 precursor1601e-40
Contig/Assembly ProteinLOC485382similar to CEGP1 protein1588e-39
Contig/Assembly ProteinLOC481753similar to signal peptide, CUB domain, EGF-like 31586e-41O
Contig/Assembly ProteinLOC485006similar to Fibrillin-3 precursor1557e-38


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC540041similar to matrilin 3 precursor1754e-44
Contig/Assembly ProteinLOC514874similar to signal peptide, CUB domain, EGF-like 31631e-42
Contig/Assembly ProteinLOC540017similar to fibrillin 2 precursor1622e-41
Contig/Assembly ProteinLOC616459similar to EGF-like-domain, multiple 31618e-40
Contig/Assembly ProteinFBN1fibrillin 11522e-37
Contig/Assembly ProteinLOC529947similar to CEGP1 protein1501e-36
Contig/Assembly ProteinFBLN5fibulin 51493e-36
Contig/Assembly ProteinLOC514588similar to fibulin 1 isoform C precursor1479e-36
Contig/Assembly ProteinLOC519259similar to fibrillin 2 precursor1432e-35
Contig/Assembly ProteinLOC514588similar to fibulin 1 isoform C precursor1394e-33


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinFBN1fibrillin 11436e-37
Contig/Assembly ProteinEGFepidermal growth factor1221e-29
Contig/Assembly ProteinCD97CD97 antigen62.81e-11O


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
OVR010021E09OVR01_0021_E09.bBP143345 AK234180