[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-031570
Length:
1,169
Sequence:
[FASTA format sequence]
CTTGTGACTT AAACXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXTTAT TCCGTATGTG GGTGGAGGAG GGCCACAGTA CCCATTTGAG
TGGGACTTGC CTGCTCCCCT CACACACTGT CCTCTCCTGT TCTCCAGCAT GTTGCATCTG
TGTTTCTCCA GAGGCTTCTG GATGGCAGCT CTGACCGTGA TGCTGGTGGT GCTGAGCCCT
CCCTTGGCTT TGGCCAGGGA CACCCCACCG CATTTCTTGT TTCTGGGGAA GGCTGAGTGT
CATTTCTTCA ACGGGACGGA GCGGGTGAGG TTTCTGGACA GATACTTCTA TAATGGAGAT
GAGTACGTGC GCTTTCACAG CGACGTGGGC GAATTCCGGG AAGTGACCCA ATTTGGGCGG
CCCGACGGCC AGTACTGGAA CAGCCAGAAG GACTTCCTGG AGCAAAAGCT GGCGGAAGTG
GACACCGTGT GCCGACACCA CTACGAGATC TTAGAGACCT TCCTCGTGGC CCGGCGAGCT
GAACCCAGAG TGACAGTGTA CCCTGGAAAG AACCCGCCCC TGGAGCAACC CAACCTCCTG
GTTTGCTCTG TGACCGGGTT CTACCCAAGG CCTGTGGAAG TCAAGTGGTT CCCGAAAGGC
CAAGAAGAAG CGGCGGGGGT GGTCTCCCCA AGCCTGATCC CTAATGGAGA ATGGACCTTC
CCCAACATGG GGATGCTTTA AACTGTTCCC CCCAAGGGAG AGGTCTCCAC CCGCCCAGGG
GAACACCCCC ACCCGACAAA CCCCCTTCCA GGGGAATGGA GGGCACGGGC TTAAATCTTC
TCAGGGCAAA AAAAAAAATG GGAACCGGGG CCTTCCCCCT GGGGCTGCCC CTTTGTTGCT
GGGGGGGGTG TTCCTCCCCT TTCCAAAATC AAAAAAGGAA CCCCTGGCCC TTTAACCCAA
AAAGGCCTCC TATACTTAAA AGGCCAAAGG GGGAAACTCC CCAGAAAACC AATTCTTTGT
GCACCCGCTT TTCCACCAAT AAAAAAAGGC CCCCCCCATA AGCCTCTGGC TCCTCCCCCC
CCGGAAAAGC TCTTCCTCCA AAAACCCCCT TTTGTTTCTG GGTACGCGGG ACCCCGCCCC
AAAAAGGTCC TTTTAAGGGG TTTTTTCCAC CCTCCCCCCC TTAAACTCGA AAAATCTCCG
GCCTACAATG CCCATCCCCC CACTTCCCCA TTTTTCTTTT TTTTTC
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
HLA-DRB1 | major histocompatibility complex, class II, DR beta 1 | 276 | 2e-74 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 270 | 1e-72 | O | ||
HLA-DRB5 | major histocompatibility complex, class II, DR beta 5 | 268 | 7e-72 | O | ||
HLA-DRB3 | major histocompatibility complex, class II, DR beta 3 | 267 | 1e-71 | O | ||
HLA-DRB4 | major histocompatibility complex, class II, DR beta 4 | 265 | 4e-71 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 265 | 7e-71 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 239 | 4e-63 | O | ||
HLA-DQB2 | major histocompatibility complex, class II, DQ beta 2 | 223 | 3e-58 | O | ||
HLA-DPB1 | major histocompatibility complex, class II, DP beta 1 | 220 | 2e-57 | O | ||
HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 | 219 | 4e-57 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
H2-Eb1 | histocompatibility 2, class II antigen E beta | 261 | 1e-69 | O | ||
A130038H09Rik | RIKEN cDNA A130038H09 gene | 222 | 5e-58 | O | ||
H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 | 211 | 2e-54 | O | ||
H2-Ob | histocompatibility 2, O region beta locus | 194 | 1e-49 | O | ||
H2-DMb1 | histocompatibility 2, class II, locus Mb1 | 60.8 | 3e-09 | O | ||
H2-DMb2 | histocompatibility 2, class II, locus Mb2 | 59.3 | 7e-09 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
DLA-DRB1 | MHC class II DLA DRB1 beta chain | 272 | 4e-73 | O | ||
DLA-DQB1 | MHC class II DLA-DQ beta chain b1 domain | 244 | 9e-65 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 214 | 2e-55 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 209 | 3e-54 | O | ||
LOC607827 | similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) | 55.1 | 1e-07 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
BoLA-DRB3 | major histocompatibility complex, class II, DRB3 | 295 | 6e-80 | O | ||
LOC538700 | similar to major histocompatibility complex, class II, DR beta 5 precursor | 245 | 4e-65 | O | ||
BLA-DQB | MHC class II antigen | 229 | 4e-60 | O | ||
BOLA-DQB | major histocompatibility complex, class II, DQ beta | 219 | 4e-57 | O | ||
LOC618722 | similar to H-2 class II histocompatibility antigen, I-E beta chain precursor | 197 | 1e-50 | O | ||
BOLA-DOB | major histocompatibility complex, class II, DO beta | 194 | 9e-50 | O | ||
BOLA-DYB | major histocompatibility complex, class II, DY beta | 187 | 2e-47 | O | ||
LOC617421 | similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7) | 112 | 6e-25 | O | ||
BOLA-DQA2 | major histocompatibility complex, class II, DQ alpha 1 | 54.7 | 1e-07 | O | ||
BOLA-DMB | major histocompatibility complex, class II, DM beta-chain, expressed | 52.4 | 7e-07 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
SLA-7 | swine leukocyte antigen 7 | 53.1 | 1e-08 |
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