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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-031570

Length: 1,169

Sequence:  [FASTA format sequence]
CTTGTGACTT AAACXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXTTAT TCCGTATGTG GGTGGAGGAG GGCCACAGTA CCCATTTGAG
TGGGACTTGC CTGCTCCCCT CACACACTGT CCTCTCCTGT TCTCCAGCAT GTTGCATCTG
TGTTTCTCCA GAGGCTTCTG GATGGCAGCT CTGACCGTGA TGCTGGTGGT GCTGAGCCCT
CCCTTGGCTT TGGCCAGGGA CACCCCACCG CATTTCTTGT TTCTGGGGAA GGCTGAGTGT
CATTTCTTCA ACGGGACGGA GCGGGTGAGG TTTCTGGACA GATACTTCTA TAATGGAGAT
GAGTACGTGC GCTTTCACAG CGACGTGGGC GAATTCCGGG AAGTGACCCA ATTTGGGCGG
CCCGACGGCC AGTACTGGAA CAGCCAGAAG GACTTCCTGG AGCAAAAGCT GGCGGAAGTG
GACACCGTGT GCCGACACCA CTACGAGATC TTAGAGACCT TCCTCGTGGC CCGGCGAGCT
GAACCCAGAG TGACAGTGTA CCCTGGAAAG AACCCGCCCC TGGAGCAACC CAACCTCCTG
GTTTGCTCTG TGACCGGGTT CTACCCAAGG CCTGTGGAAG TCAAGTGGTT CCCGAAAGGC
CAAGAAGAAG CGGCGGGGGT GGTCTCCCCA AGCCTGATCC CTAATGGAGA ATGGACCTTC
CCCAACATGG GGATGCTTTA AACTGTTCCC CCCAAGGGAG AGGTCTCCAC CCGCCCAGGG
GAACACCCCC ACCCGACAAA CCCCCTTCCA GGGGAATGGA GGGCACGGGC TTAAATCTTC
TCAGGGCAAA AAAAAAAATG GGAACCGGGG CCTTCCCCCT GGGGCTGCCC CTTTGTTGCT
GGGGGGGGTG TTCCTCCCCT TTCCAAAATC AAAAAAGGAA CCCCTGGCCC TTTAACCCAA
AAAGGCCTCC TATACTTAAA AGGCCAAAGG GGGAAACTCC CCAGAAAACC AATTCTTTGT
GCACCCGCTT TTCCACCAAT AAAAAAAGGC CCCCCCCATA AGCCTCTGGC TCCTCCCCCC
CCGGAAAAGC TCTTCCTCCA AAAACCCCCT TTTGTTTCTG GGTACGCGGG ACCCCGCCCC
AAAAAGGTCC TTTTAAGGGG TTTTTTCCAC CCTCCCCCCC TTAAACTCGA AAAATCTCCG
GCCTACAATG CCCATCCCCC CACTTCCCCA TTTTTCTTTT TTTTTC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		HLA-DRB1	major histocompatibility complex, class II, DR beta 1	276	2e-74	O
		LOC649143	similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)	270	1e-72	O
		HLA-DRB5	major histocompatibility complex, class II, DR beta 5	268	7e-72	O
		HLA-DRB3	major histocompatibility complex, class II, DR beta 3	267	1e-71	O
		HLA-DRB4	major histocompatibility complex, class II, DR beta 4	265	4e-71	O
		LOC649143	similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)	265	7e-71	O
		LOC649143	similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)	239	4e-63	O
		HLA-DQB2	major histocompatibility complex, class II, DQ beta 2	223	3e-58	O
		HLA-DPB1	major histocompatibility complex, class II, DP beta 1	220	2e-57	O
		HLA-DQB1	major histocompatibility complex, class II, DQ beta 1	219	4e-57	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		H2-Eb1	histocompatibility 2, class II antigen E beta	261	1e-69	O
		A130038H09Rik	RIKEN cDNA A130038H09 gene	222	5e-58	O
		H2-Ab1	histocompatibility 2, class II antigen A, beta 1	211	2e-54	O
		H2-Ob	histocompatibility 2, O region beta locus	194	1e-49	O
		H2-DMb1	histocompatibility 2, class II, locus Mb1	60.8	3e-09	O
		H2-DMb2	histocompatibility 2, class II, locus Mb2	59.3	7e-09	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		DLA-DRB1	MHC class II DLA DRB1 beta chain	272	4e-73	O
		DLA-DQB1	MHC class II DLA-DQ beta chain b1 domain	244	9e-65	O
		HLA-DOB	major histocompatibility complex, class II, DO beta	214	2e-55	O
		HLA-DOB	major histocompatibility complex, class II, DO beta	209	3e-54	O
		LOC607827	similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB)	55.1	1e-07	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		BoLA-DRB3	major histocompatibility complex, class II, DRB3	295	6e-80	O
		LOC538700	similar to major histocompatibility complex, class II, DR beta 5 precursor	245	4e-65	O
		BLA-DQB	MHC class II antigen	229	4e-60	O
		BOLA-DQB	major histocompatibility complex, class II, DQ beta	219	4e-57	O
		LOC618722	similar to H-2 class II histocompatibility antigen, I-E beta chain precursor	197	1e-50	O
		BOLA-DOB	major histocompatibility complex, class II, DO beta	194	9e-50	O
		BOLA-DYB	major histocompatibility complex, class II, DY beta	187	2e-47	O
		LOC617421	similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7)	112	6e-25	O
		BOLA-DQA2	major histocompatibility complex, class II, DQ alpha 1	54.7	1e-07	O
		BOLA-DMB	major histocompatibility complex, class II, DM beta-chain, expressed	52.4	7e-07	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		SLA-7	swine leukocyte antigen 7	53.1	1e-08