[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-033737
Length:
781
Sequence:
[FASTA format sequence]
ATXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXTTCT CTGAAGGGGG GATACTATAA CCATTGAGTG GGAGCTGTGT TGACTACCAT
TACTTCTTCG GTTGTCCTCA ATTATGTCTG GGATGGTGGC TCTGCGGATC CCCAGAGGCC
TTTGGACAGC GGCCGTGACG GTGATGCTGG TGGTGCTGGG TGCTCCGGTG GCTGAGGGCA
CAGACTCTCC ACAGGATTTC GTGGTCCACT TTAAGGGCGA ATGCTACTTC TACGAGAGAA
CGCATCGGGT GCGGTTCGTG GCCAGATACA TCTACAACCA GGAGGAGCAT TTGCGCTTCG
ACAGCGACGT GGGGGAGTTC CGGGCGGTGA CCCCGCTGGG GCGGCCTGAG GCCGACTCCT
GCAACATGCA CAAGGACTTC CTGGAGCAGA AGCTGCCCGA GCTGGACACT GTGTGCGAAC
ACACCTACCA GATAGAGGAA GGCACGACCC TGCATCGGAG AGTGCAACCT ACAGTGACTA
TCTCCCCATC CAAGGCAGAG GCTCTAAACC ACCACAACCT GCTGGTCTGT GCAGCGACAG
ATGTCTATAC CTGCCTGGTG AAAGTACAGT GGTTTCGGAA TGGTCAGGAG GAGACAGCTG
TCGATGTGTC CACTCCTCTT ATCACGAACG GTGACTGGAC CTACCAGGAG CTCTCGATGC
TATACATGAA TCTCCAACGA GGAGATGTCT ACACGCTGCG CGTGTACACT CCAGACTACA
GAACCCTATG ACGTCGGAGT GGCAGCCCAG ATTGAATCTC CCAGACCAGA TGCTGAGCAG
CGCTTATGCC TCCAC
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 | 266 | 1e-71 | O | ||
HLA-DQB2 | major histocompatibility complex, class II, DQ beta 2 | 263 | 9e-71 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 220 | 9e-58 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 220 | 9e-58 | O | ||
HLA-DRB1 | major histocompatibility complex, class II, DR beta 1 | 214 | 6e-56 | O | ||
HLA-DRB5 | major histocompatibility complex, class II, DR beta 5 | 213 | 1e-55 | O | ||
HLA-DRB3 | major histocompatibility complex, class II, DR beta 3 | 211 | 5e-55 | O | ||
HLA-DRB4 | major histocompatibility complex, class II, DR beta 4 | 207 | 1e-53 | O | ||
HLA-DPB1 | major histocompatibility complex, class II, DP beta 1 | 206 | 2e-53 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 196 | 2e-50 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 | 225 | 4e-59 | O | ||
H2-Eb1 | histocompatibility 2, class II antigen E beta | 210 | 1e-54 | O | ||
A130038H09Rik | RIKEN cDNA A130038H09 gene | 176 | 5e-44 | O | ||
H2-Ob | histocompatibility 2, O region beta locus | 174 | 9e-44 | O | ||
H2-DMb1 | histocompatibility 2, class II, locus Mb1 | 56.6 | 3e-08 | O | ||
H2-DMb2 | histocompatibility 2, class II, locus Mb2 | 56.6 | 3e-08 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
DLA-DQB1 | MHC class II DLA-DQ beta chain b1 domain | 273 | 2e-73 | O | ||
DLA-DRB1 | MHC class II DLA DRB1 beta chain | 214 | 6e-56 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 189 | 3e-48 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 189 | 3e-48 | O | ||
LOC607827 | similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) | 56.6 | 3e-08 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
BLA-DQB | MHC class II antigen | 283 | 1e-76 | O | ||
BOLA-DQB | major histocompatibility complex, class II, DQ beta | 278 | 3e-75 | O | ||
BoLA-DRB3 | major histocompatibility complex, class II, DRB3 | 216 | 2e-56 | O | ||
BOLA-DYB | major histocompatibility complex, class II, DY beta | 202 | 2e-52 | O | ||
LOC538700 | similar to major histocompatibility complex, class II, DR beta 5 precursor | 184 | 9e-47 | O | ||
BOLA-DOB | major histocompatibility complex, class II, DO beta | 179 | 2e-45 | O | ||
LOC618722 | similar to H-2 class II histocompatibility antigen, I-E beta chain precursor | 159 | 2e-39 | O | ||
LOC617421 | similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7) | 94.4 | 9e-20 | O | ||
BOLA-DMB | major histocompatibility complex, class II, DM beta-chain, expressed | 52.4 | 4e-07 | O |
Locus | Definition | Score | E value | FL |
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