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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-033737

Length: 781

Sequence [FASTA format sequence]
ATXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXX
TTCT CTGAAGGGGG GATACTATAA CCATTGAGTG GGAGCTGTGT TGACTACCAT
TACTTCTTCG GTTGTCCTCA ATTATGTCTG GGATGGTGGC TCTGCGGATC CCCAGAGGCC
TTTGGACAGC GGCCGTGACG GTGATGCTGG TGGTGCTGGG TGCTCCGGTG GCTGAGGGCA
CAGACTCTCC ACAGGATTTC GTGGTCCACT TTAAGGGCGA ATGCTACTTC TACGAGAGAA
CGCATCGGGT GCGGTTCGTG GCCAGATACA TCTACAACCA GGAGGAGCAT TTGCGCTTCG
ACAGCGACGT GGGGGAGTTC CGGGCGGTGA CCCCGCTGGG GCGGCCTGAG GCCGACTCCT
GCAACATGCA CAAGGACTTC CTGGAGCAGA AGCTGCCCGA GCTGGACACT GTGTGCGAAC
ACACCTACCA GATAGAGGAA GGCACGACCC TGCATCGGAG AGTGCAACCT ACAGTGACTA
TCTCCCCATC CAAGGCAGAG GCTCTAAACC ACCACAACCT GCTGGTCTGT GCAGCGACAG
ATGTCTATAC CTGCCTGGTG AAAGTACAGT GGTTTCGGAA TGGTCAGGAG GAGACAGCTG
TCGATGTGTC CACTCCTCTT ATCACGAACG GTGACTGGAC CTACCAGGAG CTCTCGATGC
TATACATGAA TCTCCAACGA GGAGATGTCT ACACGCTGCG CGTGTACACT CCAGACTACA
GAACCCTATG ACGTCGGAGT GGCAGCCCAG ATTGAATCTC CCAGACCAGA TGCTGAGCAG
CGCTTATGCC TCCAC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DQB1major histocompatibility complex, class II, DQ beta 12661e-71O
Contig/Assembly ProteinHLA-DQB2major histocompatibility complex, class II, DQ beta 22639e-71O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)2209e-58O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)2209e-58O
Contig/Assembly ProteinHLA-DRB1major histocompatibility complex, class II, DR beta 12146e-56O
Contig/Assembly ProteinHLA-DRB5major histocompatibility complex, class II, DR beta 52131e-55O
Contig/Assembly ProteinHLA-DRB3major histocompatibility complex, class II, DR beta 32115e-55O
Contig/Assembly ProteinHLA-DRB4major histocompatibility complex, class II, DR beta 42071e-53O
Contig/Assembly ProteinHLA-DPB1major histocompatibility complex, class II, DP beta 12062e-53O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)1962e-50O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 12254e-59O
Contig/Assembly ProteinH2-Eb1histocompatibility 2, class II antigen E beta2101e-54O
Contig/Assembly ProteinA130038H09RikRIKEN cDNA A130038H09 gene1765e-44O
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus1749e-44O
Contig/Assembly ProteinH2-DMb1histocompatibility 2, class II, locus Mb156.63e-08O
Contig/Assembly ProteinH2-DMb2histocompatibility 2, class II, locus Mb256.63e-08O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDLA-DQB1MHC class II DLA-DQ beta chain b1 domain2732e-73O
Contig/Assembly ProteinDLA-DRB1MHC class II DLA DRB1 beta chain2146e-56O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta1893e-48O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta1893e-48O
Contig/Assembly ProteinLOC607827similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB)56.63e-08O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBLA-DQBMHC class II antigen2831e-76O
Contig/Assembly ProteinBOLA-DQBmajor histocompatibility complex, class II, DQ beta2783e-75O
Contig/Assembly ProteinBoLA-DRB3major histocompatibility complex, class II, DRB32162e-56O
Contig/Assembly ProteinBOLA-DYBmajor histocompatibility complex, class II, DY beta2022e-52O
Contig/Assembly ProteinLOC538700similar to major histocompatibility complex, class II, DR beta 5 precursor1849e-47O
Contig/Assembly ProteinBOLA-DOBmajor histocompatibility complex, class II, DO beta1792e-45O
Contig/Assembly ProteinLOC618722similar to H-2 class II histocompatibility antigen, I-E beta chain precursor1592e-39O
Contig/Assembly ProteinLOC617421similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7)94.49e-20O
Contig/Assembly ProteinBOLA-DMBmajor histocompatibility complex, class II, DM beta-chain, expressed52.44e-07O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
OVRM10031B12OVRM1_0031_B12.b