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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-034822

Length: 769

Sequence [FASTA format sequence]
AGTTGXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXC
CTCTCGCTGC GCTTCAGCAG CCGCAGCTGC CTCTAGGCAA GATGATTGGG GTCCTGCTCC
TGCTCCTTCT TCTCCCTTTG CTCCTGTACA TCGCTGTACC CCAAATCAGG AAAATGCTGT
CCAGCGGGGT GTGTACATCA ACCGTCCAGC TTCCTGGGAA AGTCGCTGTG GTCACTGGAG
CCAACACAGG CATTGGGAAG GAGACGGCCA AAGAGCTGGC TAAAAGAGGA ATCAGTGGCC
AGAGAAATCC AGAACATGAC AGGAAACCAA CAGGTATTGG TGCGGAAACT GGACCTGGCT
GATACTAAAT CTATTCGAGC CTTTGCTAAG GGCTTCTTAG CAGAAGAAAA GCATCTCCAC
ATTTTGATCA ACAATGCAGG AGTGATGATG TGTCCTTACT CCAAGACAGC AGATGGCTTT
GAGACGCGCA TAGGAGTCAA CCACTTAGGT CACTTCCTCC TGACCCATCT GTTACTAGAG
AAGCTGAAGG AATCAGCCCC ATCAAGGGTA GTGAATGTGT CTTCCTTAGC ACATCACATG
GGAAGGATCC ACTTCCATAA CCTGCAGGGT GAGAAGTTCT ACCATGCGGG TCTGGCCTAC
TGTAACAGCA AGTTAGCCAA CGTTCTCTTC ACCCAGGAAC TGGCCCGGAG GCTAAAAGGC
TCTGGCGTTA CAACATACTC AGTACACCCT GGCACAGTTG ACTCTGAATT GGGTCGGCAC
TCATCCCTCC TGAGATGGNA TTGGTGGCTT TTCTCCTTCT TCATCAAA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRDH11retinol dehydrogenase 11 (all-trans/9-cis/11-cis)2704e-93
Contig/Assembly ProteinRDH12retinol dehydrogenase 12 (all-trans/9-cis/11-cis)2298e-76O
Contig/Assembly ProteinRDH13retinol dehydrogenase 13 (all-trans/9-cis)1553e-38O
Contig/Assembly ProteinRDH14retinol dehydrogenase 14 (all-trans/9-cis/11-cis)1472e-39
Contig/Assembly ProteinMGC23280hypothetical protein MGC232801141e-25O
Contig/Assembly ProteinDHRSXdehydrogenase/reductase (SDR family) X-linked1094e-28
Contig/Assembly ProteinWWOXWW domain containing oxidoreductase94.41e-24
Contig/Assembly ProteinFLJ13639hypothetical protein FLJ1363973.62e-13O
Contig/Assembly ProteinFLJ13639hypothetical protein FLJ1363973.62e-13O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRdh11retinol dehydrogenase 112562e-87O
Contig/Assembly ProteinRdh12retinol dehydrogenase 122091e-70O
Contig/Assembly ProteinRdh13retinol dehydrogenase 13 (all-trans and 9-cis)1506e-47O
Contig/Assembly ProteinRdh14retinol dehydrogenase 14 (all-trans and 9-cis)1473e-39
Contig/Assembly Protein2610209N15RikRIKEN cDNA 2610209N15 gene1154e-32O
Contig/Assembly ProteinDhrsxdehydrogenase/reductase (SDR family) X chromosome1023e-22
Contig/Assembly ProteinWwoxWW domain-containing oxidoreductase90.93e-23


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC480366similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)2657e-88
Contig/Assembly ProteinLOC490744similar to retinol dehydrogenase 12 (all-trans and 9-cis)2356e-76O
Contig/Assembly ProteinLOC611373similar to Retinol dehydrogenase 131553e-48O
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)1463e-38
Contig/Assembly ProteinLOC491173similar to retinol dehydrogenase 11 (predicted)1172e-33O
Contig/Assembly ProteinLOC609792similar to dehydrogenase/reductase (SDR family) X-linked1151e-29
Contig/Assembly ProteinLOC610120similar to WW domain-containing oxidoreductase isoform 194.79e-25
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)92.44e-19
Contig/Assembly ProteinLOC475790similar to Retinol dehydrogenase 1290.91e-18


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDSSDR2double substrate-specificity short chain dehydrogenase/reductase 22343e-76O
Contig/Assembly ProteinLOC505995similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)2092e-54O
Contig/Assembly ProteinLOC505995similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)2022e-52O
Contig/Assembly ProteinMGC139076similar to retinol dehydrogenase 14 (all-trans and 9-cis)1452e-39
Contig/Assembly ProteinMGC139505similar to retinol dehydrogenase 11 (predicted)1223e-35O
Contig/Assembly ProteinLOC513482similar to dehydrogenase/reductase (SDR family) X-linked1031e-22O
Contig/Assembly ProteinLOC618792similar to WW domain-containing oxidoreductase isoform 194.49e-20O
Contig/Assembly ProteinMGC140618similar to retinol dehydrogenase 13 (all-trans and 9-cis)88.65e-18O
Contig/Assembly ProteinLOC507942similar to retinol dehydrogenase 11 (predicted)81.65e-22
Contig/Assembly ProteinLOC507931similar to Retinol dehydrogenase 1379.77e-26O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
OVRM10060B08OVRM1_0060_B08.bBP146902