[Help]

[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-041033

Length: 1,188

Sequence:  [FASTA format sequence]
NNGGTGAAAC AXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXTTCTC
TTTGCTTGTA TTGCTGTCCA TCCTGACCCA CCATAGCTCT ACCGACCCTC ATCGAGGCAT
CTAAGGAGAA AATGACCATA CTTGGGGTCC CAGTCCTGGG ATTTGTCATC ACCATCTTGA
ACCTTCAGAA ATCATGGGCT ATCGTAGAGA ATCACGTGAT CATCCAGGCT GAGTTCTATC
TGAGCCCTGA CAAATCTGGC GAGTTTATGT TTGACTTTGA CGGTGATGAG ATTTTCCACG
TGGATATGGA AAAGAGGGAG ACGGTCTGGC GACTTGAAGA ATTTGGACAT TTTGCCAGCT
TTGAGGCTCA GGGTGCACTG GCCAACATAG CTGTGGACAA AGCCAACCTG GAAATCATGA
TCAAGCGCTC CAACAACACC CCGAACACCA ATGTACCTCC AGAAGTGACT GTGCTCTCAG
ACAAGCCTAT TGAACTGGGA GAGCCCAACA TCCTCATCTG TTTCATCGAC AAGTTCTCCC
CGCCAGTGGT CAATGTCACC TGGCTTCGAA ATGGCTCCCC TGTCACCAGA GGAGTGTCAG
AGACAGTCTT CCTGCCCCGG GAGGACCACC TTTTCCGCAA GTTCCACTAT CTCCCCTTCA
TGCCCTCTTC TCAAGCACTG GGAGTTTGAA GCTCAAACCC CCCTCCCAGA GACTACAGAG
AACACCGTGT GTGCTCTGGG CCTGATTGTG GCTCTGGTGG GCATCATCGT CGGAACCGTC
CTCATCATCA AGGGTGTGCG CAAAGGCAAC GCCACTGAAC GCCGAGGGCC TCTGTGANGT
GCTTGCAGGG AATGGGCTTT GTTAAAGATC AATGAAGATA TTTCCTCTTN GACAGCTTTA
CAAACCCAGC GATACTCCAG CTGTTCACCT CCGTGAAGAA CACTCTCCTT CAGCACTTTC
CAGCCCCTGA GCACTCTAAG TGGTGATGCC CTCTNNNTAT CTCAAATCTA ACATCTGGGT
ATTCCTGTTN GTACCCCTTC TTGTGCTGGC TTTTCCCTCA TTTCCCAGCC TTTTATTATC
ACCTGTATGC CTTTGGAAAA AATCCCATAG ATCTTTCCCT GCTTGAAACT TTCCAAGTTC
ATGGGGGCCC CCCGGGAACT TATTACTTGA ATTCTTCCCC GGGATTGGGA TTTTTGAAAA
AAAACTTTAG GGGCCCTAAA AAAAAAAAAG CACATGGCCC ACTCGGGCGG GCCCCCAAAA
ACCTCGGGGC CCTATCCACC CTTTTTTAAA GGGCCCAGGG GCAATAACGA CGGCCCTTTT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

---

Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		HLA-DRA	major histocompatibility complex, class II, DR alpha	282	3e-88	O
		HLA-DPA1	major histocompatibility complex, class II, DP alpha 1	179	1e-49	O
		HLA-DOA	major histocompatibility complex, class II, DO alpha	169	1e-45	O
		HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	153	2e-42	O
		LOC650946	similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)	151	9e-42	O
		LOC650946	similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)	151	9e-42	O
		LOC650946	similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)	151	9e-42	O
		LOC650946	similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)	151	9e-42	O
		HLA-DQA2	major histocompatibility complex, class II, DQ alpha 2	151	5e-41	O
		HLA-DQA1	major histocompatibility complex, class II, DQ alpha 1	139	3e-38	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		H2-Ea	histocompatibility 2, class II antigen E alpha	260	8e-77	O
		H2-Oa	histocompatibility 2, O region alpha locus	158	6e-43	O
		H2-Aa	histocompatibility 2, class II antigen A, alpha	152	5e-42	O
		H2-DMa	histocompatibility 2, class II, locus DMa	67.4	3e-11	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		DLA-DRA1	MHC class II DR alpha chain	288	1e-88	O
		dqa1	MHC class II DLA DQalpha chain	156	1e-44	O
		LOC474869	similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)	149	4e-40	O
		LOC474869	similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)	77.4	3e-14	O
		HLA-DMA	major histocompatibility complex, class II, DM alpha	70.5	3e-12	O
		HLA-DMA	major histocompatibility complex, class II, DM alpha	52.8	7e-07	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		BOLA-DRA	major histocompatibility complex, class II, DR alpha	273	4e-85	O
		LOC525727	similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)	177	5e-48	O
		LOC525727	similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)	174	5e-47	O
		BOLA-DQA1	histocompatibility complex, class II, DQ alpha, type 1	157	7e-44	O
		BOLA-DQA2	major histocompatibility complex, class II, DQ alpha 1	156	3e-38	O
		BOLA-DYA	major histocompatibility complex, class II, DY alpha	147	7e-40	O
		BOLA-DQA	major histocompatibility complex, class II, DQ alpha	143	1e-39	O
		BOLA-DMA	major histocompatibility complex, class II, DM alpha-chain, expressed	58.9	7e-09	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		SLA-DMA	SLA-DM alpha chain	62.4	2e-11	O