Assembly Information

[Overview] [RefSeq] [Assembly & SNP]

Assembly Name: 20060611S-041266

Sequence: [FASTA format sequence] NNNNAATXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXGCAT TCTCTTTGCT TGTATTGCTG TCCATCCTGA CCCACCATAG CTCTACCGAC CCTCATCGAG GCATCTAAGG AGAAAATGAC CATACTTGGG GTCCCAGTCC TGGGATTTGT TATCACCATC TTGAACCTTC AGAAATCATG GGCTATCGTA GAGAATCACG TGATCATCCA GGCTGAGTTC TATCTGAGCC CTGACAAATC TGGCGAGTTT ATGTTTGACT TTTGACGTGA TGAGATTTTC CACGTGNATA TGGAAAAGAG GNNAGACGTC TGGCGACTTT GAGAATTTGG ACATTTTGCC AGCTTTGAGG CTCAGGNTGC ACTGGCCCAC CTAACCTGTT GACAAGAGCC AACTGAAAAT CATGATTAAN CGCTTCCAAA AAACCCCCAA AACCAAAGGT ACTCCCAAAT TGACTGGGCC TTCTAAAAAA CCTGGTTGAC TGGGGAAAAC CCCAAATCCC CACCTGGTTT CTCTCACAAA TTTTTCCCCC CCACGGGGGA AAGTGACCCC GGGTTTTAAA AGGGGCCCCC GGTTACCCAA GAAAGTGTTA AAAAAATTTT TTCTTGCCCC CGGAGAGAAA CCTTTTTCCC AGGATTCCCA AAATCCCCCT CTTTGGCCCC CCCCAAGAAG TTTTTTAAAT TCCCCGGGGG AACCTGGGGG TTTTGCACAA CCCTCTTTCT AACCCCGGGG GGTTTGAAAA TAAAACCCCC CCCCCAAAAA AAAAAAAAAA ACCCTGGGTG CTCTCGCCCC AAATTTGGCC TCTGGGGGGA AATTTCCTGG GACACTCCTT TTTAAAAAGG GGGGGGGAAA GGAAACCCCC CTAAAACCCG AGGGCCTTTT TGGGGGTTTT CGGGAAGAAA TTTTTTTAAA AAAATAAGGA ATATTCTCCT TAAAAATTTT TAAAAACCGA GGATTCCCGG TTGTCACCTC GAGAGAACAC TCTCTCGGCA TTTCAGCCTG AAGCATCAAG TGTGATGCTT CTTATCTCAA ATTACATCGG GTATCCTGTT GTACCCCTCT GGCTGCTTTC TCCCTTCCAG CTTTTATACC CGGTATGCCT TGAAAAATCC TAGATCTTCC TGCTGAACCT TCAGTTTTGG GCTCTTGTAC TTTCTGGATT TCCCCGGTTG GTTTCGAAAC AATTGGGGCT CGGGAAAAAA AAAGCCCGG

SNP mapping information

SNP ID Rel. Chr. Location (cM)
Assembly Overview: TOP

Change score limit to

BLAST on RefSeq (Human): TOP

Locus Definition Score E value FL
HLA-DRA major histocompatibility complex, class II, DR alpha 120 1e-27 O

HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 63.2 2e-10 O

HLA-DOA major histocompatibility complex, class II, DO alpha 53.1 2e-07 O

Locus	Definition	Score	E value	FL
HLA-DRA	major histocompatibility complex, class II, DR alpha	120	1e-27	O
HLA-DPA1	major histocompatibility complex, class II, DP alpha 1	63.2	2e-10	O
HLA-DOA	major histocompatibility complex, class II, DO alpha	53.1	2e-07	O

BLAST on RefSeq (Mouse): TOP

Locus Definition Score E value FL
H2-Ea histocompatibility 2, class II antigen E alpha 106 2e-23 O

H2-Aa histocompatibility 2, class II antigen A, alpha 51.2 1e-06 O

		Locus	Definition	Score	E value	FL
		H2-Ea	histocompatibility 2, class II antigen E alpha	106	2e-23	O
		H2-Aa	histocompatibility 2, class II antigen A, alpha	51.2	1e-06	O

BLAST on RefSeq (Dog): TOP

Locus Definition Score E value FL
DLA-DRA1 MHC class II DR alpha chain 121 6e-28 O

		Locus	Definition	Score	E value	FL
		DLA-DRA1	MHC class II DR alpha chain	121	6e-28	O

BLAST on RefSeq (Cattle): TOP

Locus Definition Score E value FL
BOLA-DRA major histocompatibility complex, class II, DR alpha 122 4e-28 O

LOC525727 similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) 61.6 6e-10 O

LOC525727 similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) 61.6 6e-10 O

Locus	Definition	Score	E value	FL
BOLA-DRA	major histocompatibility complex, class II, DR alpha	122	4e-28	O
LOC525727	similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)	61.6	6e-10	O
LOC525727	similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)	61.6	6e-10	O

BLAST on RefSeq (Pig): TOP

Locus Definition Score E value FL

Assembly Member: 1 TOP

Library Plate Loc. Read Name Accession Full Seq.

PBL01 0016 H03 PBL01_0016_H03.b BW969489