[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-042132
Length:
1,093
Sequence:
[FASTA format sequence]
NGGTGXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXCTGGCTT
GATTAACTGC TCTGTCTTTA AATACTCTAA TATCAAACTA TGTGATAGTT AAAGTTTAAA
AATCCTTGTT TCCTAATTCT ATCTAAATCT AAAAAAGAAC AATCAAAAAC AAGAAAAGAA
GGAAGGAAGA AAAAGGAAAA GGGAACAAGA GAAGGAGGGA AAAGAAAACA AAGGTAGATC
AATATAGGGG GCTGATTAAT ATATATTCTG TCCTACCCCA CCCACTCCAC CATCACTTAC
ACCTTTTGAA AATCTTTATT GATATTCCTG AGATTCTGTG TATCAGAGCC TATGTTTGAT
TTGCAAATGT ATGTGGGACC AATGCAAATT TTATGACTAT TAATTTTGCA AAACTGGTAT
ATGTACAACT CATTCCAGTT ATCAAACAGG TTAAAAACTC AGGCAAGTAT ATTGCATTCA
TTTTCATAAA TGGAGGAATC AGGGTGAAAA AGACATAAAG AAAAGACTGT TCTTAATGTG
ACTCAGTTCA ATCTTTGTGA GTCTAAGATT AAATTGATTA AATTGAGTTC TAATTCTTGT
GTGCTATGGC TTAGATCCTT GCCAGAATGG AGGTTCCTGT ATCGATGGAG TGAATACTTT
CTCCTGCCTT TGCCTTCCGG GCTTCATTGG GGACAAGTGT CAGACAGACA TGAATGAGTG
TCTGAGTGAA CCCTGTAAGA ATGGTGGGAC CTGCTCCGAC TATGTCAACA GCTACACCTG
CAAGTGCCAG GCAGGATTTG ATGGAGTCCA CTGTGAGAAC AATATTGACG AGTGCACTGA
GAGCTCCCTG TTTCATGGTG GCACGTGTGT CGATGGGCTT AACTCCTTCT NNCTGTTGTG
CCNTGTGGGC TTCACTGGCC CCTTTTTNGC TCATGAGATC AATGAAATGC ACTCTCATCC
ATGCCTGAAT GAANGAATAT GTNGTGATGG CCTTGGNNTA CTACGCTGCA TCTGCCCATT
GGGCTACACA GGGAAAACTG TCAGGTAATT AGATTCATCC NATCACTCAC TCCNTACTCA
GCTCCTCAGA ATAGTGAGTA TTATACTATC CTTTNCTAGC GAATAAGCTC ACTAAAGAAA
AATTCTGATT CCAGGATGTC CTGAAAAATC TGTAACTCTT AAAAAGGAAA TCTAAAGGGG
AATGGAATTC CATTTGGCCG CAAAAAAATC ACAAATTCGG AGTGTGGATA ACCTGCCCTC
CAGGGGTAGA ATCGGGTCCC CAACTGATAA GGCAAACCCG CTTGGTTTGG GGTGGTGGGG
TCCCACTGTC TCTCAACCCC CGGCCCCTCG GTGTGTGTAA AAAAAAAATT ATAAAAAAAA
ACCCCGCGCG CCCCCCGCCC CCCCCTCCCT TNANNNAAAN NNCCNAAAAN AANTTTTATT
AATAATTAAC CTTATAGTTA TT
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | NOTCH2 | Notch homolog 2 (Drosophila) | 275 | 4e-74 | |
|
| NOTCH1 | Notch homolog 1, translocation-associated (Drosophila) | 207 | 1e-53 | |
|
| NOTCH3 | Notch homolog 3 (Drosophila) | 166 | 2e-41 | |
|
| SVEP1 | sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 | 153 | 2e-37 | |
|
| SVEP1 | sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 | 153 | 2e-37 | |
|
| SVEP1 | sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 | 153 | 2e-37 | |
|
| SVEP1 | sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 | 153 | 2e-37 | |
|
| EGFL9 | EGF-like-domain, multiple 9 | 138 | 7e-33 | O |
|
| EGFL9 | EGF-like-domain, multiple 9 | 138 | 7e-33 | O |
|
| DLL1 | delta-like 1 (Drosophila) | 135 | 5e-32 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| Notch2 | Notch gene homolog 2 (Drosophila) | 264 | 1e-70 | |
|
| Notch1 | Notch gene homolog 1 (Drosophila) | 199 | 4e-51 | |
|
| Notch3 | Notch gene homolog 3 (Drosophila) | 157 | 2e-38 | |
|
| Svep1 | sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 | 151 | 1e-36 | |
|
| Egfl9 | EGF-like-domain, multiple 9 | 144 | 2e-34 | O |
|
| Notch4 | Notch gene homolog 4 (Drosophila) | 138 | 9e-33 | |
|
| Crb1 | crumbs homolog 1 (Drosophila) | 138 | 9e-33 | O |
|
| Dll1 | delta-like 1 (Drosophila) | 135 | 8e-32 | |
|
| Crb2 | crumbs homolog 2 (Drosophila) | 135 | 6e-32 | O |
|
| Sned1 | sushi, nidogen and EGF-like domains 1 | 133 | 4e-31 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LOC483148 | similar to notch 2 preproprotein | 284 | 9e-77 | |
|
| LOC483148 | similar to notch 2 preproprotein | 282 | 4e-76 | |
|
| LOC483148 | similar to notch 2 preproprotein | 282 | 4e-76 | |
|
| LOC480676 | similar to notch1 preproprotein | 202 | 4e-52 | |
|
| LOC610439 | similar to Neurogenic locus notch homolog protein 3 precursor (Notch 3) | 172 | 4e-43 | |
|
| LOC474799 | similar to sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 | 150 | 3e-36 | |
|
| LOC485769 | similar to Jagged-1 precursor (Jagged1) (hJ1) | 144 | 2e-34 | |
|
| LOC481726 | similar to Neurogenic locus notch homolog protein 4 precursor (Notch 4) (hNotch4) | 142 | 4e-34 | |
|
| LOC609453 | similar to secreted nidogen domain protein | 133 | 3e-31 | O |
|
| LOC481814 | similar to EGF-like-domain, multiple 9 | 132 | 5e-31 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LOC513730 | similar to notch 2 preproprotein | 280 | 1e-75 | |
|
| LOC536128 | similar to Neurogenic locus notch homolog protein 4 precursor (Notch 4) (hNotch4) | 149 | 3e-36 | O |
|
| LOC540262 | similar to EGF-like-domain, multiple 9 | 138 | 7e-33 | |
|
| LOC518173 | similar to crumbs homolog 1 isoform I precursor | 136 | 3e-32 | O |
|
| LOC506694 | similar to Delta-like protein 1 precursor (Drosophila Delta homolog 1) (Delta1) (H-Delta-1) | 135 | 7e-32 | |
|
| LOC506694 | similar to Delta-like protein 1 precursor (Drosophila Delta homolog 1) (Delta1) (H-Delta-1) | 135 | 7e-32 | |
|
| LOC514207 | similar to secreted nidogen domain protein | 131 | 1e-30 | |
|
| LOC506694 | similar to Delta-like protein 1 precursor (Drosophila Delta homolog 1) (Delta1) (H-Delta-1) | 130 | 2e-30 | |
|
| LOC517405 | similar to jagged 2 isoform a precursor | 128 | 7e-30 | |
|
| LOC505993 | similar to Delta-like protein 3 precursor (Drosophila Delta homolog 3) | 124 | 1e-28 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| FBN1 | fibrillin 1 | 79.3 | 1e-16 | |
|
| TNC | tenascin C | 52.8 | 1e-08 |
|
TOP