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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-050132

Length: 1,021

Sequence [FASTA format sequence]
NNTTTGCTTG TGACTTNACX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXX
CTGGAT CATCATTGCT CTACAACTCC GAAGAGCAAC AGCTGAGACC
ACCTTGAGAA GAGCATGGTC CCAGGCCGAG TTCTGATGTG GGGGGCCCTC GCCCTGACCG
CCTTGATGAG CGCCTGTGGA GCCGACCATG TTGCCTCCTA TGGCTTAAAT GTCTACCAGT
CTTACGGTCC CAGCGGCTAT TATACCCATG AATTTGATGG CGACGAGGAA TTCTACGTGG
ACCTGGGGAA GAAGGAGACT GTCTGGCAGC TGCCTCTGTT TAGCAAATTT AGAAGTTTTG
ACCCACAGGG TGCACTGAGG AACATAGCTA CGGCAAAACA TAATTTGAAC ATCCTGATTA
AACGTTCCAA CAACACCGCG GCTGTCAATC AGGTTCCTGA GGTGACTGTG TTTCCCAAGT
CTCCAGTGAT GCTGGGTCAG CCCAACACCC TCATCTGTCA TGTGGACAAC ATCTTTCCTC
CTGTGATCAA CATCACGTGG TTGAAGAACG GGCACTCTGT CACAGAAGGT TTTTCTGAGA
CCAGCTTCCT CTCCAAAAAT GATCATTCCT TCCTCAAGAT CAGTTATCTC ACCTTCCTCC
CTTCTGATGA TGATTTTTAT GACTGCAAAG TGGAGCACTG GGGCCTGGAT AAGCCACTTC
TGAAACACTG GGAACCTGAG ATTCCAGCCC CCATGTCAGA GCTGACAGAG ACAGTGGTCT
GCGCCCTGGG ATTGATCGTG GGCCTTGTGG GCATCGTGGT GGGCACTGTC TTCATCATTC
AAGGCCTACG CTCAGGTGGG TCCCTCTAGA CACCAAGGGT CCCTGTGAGT CACACTCCCA
GAAGGGAAGG TGCACTGCCC CGCCTACAAG AGCTGAAAAG TGGATGTGCT CCACGACCCT
AGAACTATTT TCTGGCCAAA ATTCATCATT ATACCTTCTC CCCTTCCTAA ATTTCTTCTT
CTCCACCTCT TCTCCGGGAA CTTTAAGGGG GCTGTGTTCA TCCTCCGAAA ATTCATATGC
CCCTTGGGAA TCCTC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)369e-102O
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)369e-102O
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)369e-102O
Contig/Assembly ProteinLOC650946similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain)369e-102O
Contig/Assembly ProteinHLA-DQA2major histocompatibility complex, class II, DQ alpha 23585e-99O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 13553e-98O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 13523e-97O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 13523e-97O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 13523e-97O
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 13523e-97O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Aahistocompatibility 2, class II antigen A, alpha3232e-88O
Contig/Assembly ProteinH2-Oahistocompatibility 2, O region alpha locus2325e-61O
Contig/Assembly ProteinH2-Eahistocompatibility 2, class II antigen E alpha2171e-56O
Contig/Assembly ProteinH2-DMahistocompatibility 2, class II, locus DMa80.53e-15O
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus70.92e-12O
Contig/Assembly ProteinB2mbeta-2 microglobulin67.42e-11O
Contig/Assembly ProteinH2-Eb1histocompatibility 2, class II antigen E beta63.93e-10O
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 163.53e-10O
Contig/Assembly ProteinA130038H09RikRIKEN cDNA A130038H09 gene63.53e-10O
Contig/Assembly ProteinH2-DMb2histocompatibility 2, class II, locus Mb263.53e-10O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly Proteindqa1MHC class II DLA DQalpha chain363e-100O
Contig/Assembly ProteinLOC474869similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)2332e-61O
Contig/Assembly ProteinDLA-DRA1MHC class II DR alpha chain2271e-59O
Contig/Assembly ProteinLOC474869similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)997e-21O
Contig/Assembly ProteinHLA-DMAmajor histocompatibility complex, class II, DM alpha76.35e-14
Contig/Assembly ProteinDLA-DQB1MHC class II DLA-DQ beta chain b1 domain68.21e-11
Contig/Assembly ProteinDLA-DRB1MHC class II DLA DRB1 beta chain67.82e-11
Contig/Assembly ProteinHLA-DMAmajor histocompatibility complex, class II, DM alpha67.82e-11O
Contig/Assembly ProteinLOC478284similar to beta-2-microglobulin precursor65.58e-11O
Contig/Assembly ProteinLOC478284similar to beta-2-microglobulin precursor65.58e-11O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBOLA-DQA1histocompatibility complex, class II, DQ alpha, type 1374e-104O
Contig/Assembly ProteinBOLA-DQAmajor histocompatibility complex, class II, DQ alpha3492e-96O
Contig/Assembly ProteinBOLA-DQA2major histocompatibility complex, class II, DQ alpha 13301e-90O
Contig/Assembly ProteinBOLA-DYAmajor histocompatibility complex, class II, DY alpha2985e-81O
Contig/Assembly ProteinLOC525727similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)2415e-64O
Contig/Assembly ProteinLOC525727similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha)2393e-63O
Contig/Assembly ProteinBOLA-DRAmajor histocompatibility complex, class II, DR alpha2286e-60O
Contig/Assembly ProteinB2Mbeta-2-microglobulin71.21e-12O
Contig/Assembly ProteinBOLA-DMAmajor histocompatibility complex, class II, DM alpha-chain, expressed68.21e-11O
Contig/Assembly ProteinBOLA-DOBmajor histocompatibility complex, class II, DO beta65.57e-11O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLA-DMASLA-DM alpha chain73.96e-15O
Contig/Assembly ProteinB2Mbeta 2-microglobulin71.24e-14O
Contig/Assembly ProteinSLA-7swine leukocyte antigen 751.63e-08


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
SPL010057E01SPL01_0057_E01.bCJ018148 AK397722