[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-050132
Length:
1,021
Sequence:
[FASTA format sequence]
NNTTTGCTTG TGACTTNACX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXCTGGAT CATCATTGCT CTACAACTCC GAAGAGCAAC AGCTGAGACC
ACCTTGAGAA GAGCATGGTC CCAGGCCGAG TTCTGATGTG GGGGGCCCTC GCCCTGACCG
CCTTGATGAG CGCCTGTGGA GCCGACCATG TTGCCTCCTA TGGCTTAAAT GTCTACCAGT
CTTACGGTCC CAGCGGCTAT TATACCCATG AATTTGATGG CGACGAGGAA TTCTACGTGG
ACCTGGGGAA GAAGGAGACT GTCTGGCAGC TGCCTCTGTT TAGCAAATTT AGAAGTTTTG
ACCCACAGGG TGCACTGAGG AACATAGCTA CGGCAAAACA TAATTTGAAC ATCCTGATTA
AACGTTCCAA CAACACCGCG GCTGTCAATC AGGTTCCTGA GGTGACTGTG TTTCCCAAGT
CTCCAGTGAT GCTGGGTCAG CCCAACACCC TCATCTGTCA TGTGGACAAC ATCTTTCCTC
CTGTGATCAA CATCACGTGG TTGAAGAACG GGCACTCTGT CACAGAAGGT TTTTCTGAGA
CCAGCTTCCT CTCCAAAAAT GATCATTCCT TCCTCAAGAT CAGTTATCTC ACCTTCCTCC
CTTCTGATGA TGATTTTTAT GACTGCAAAG TGGAGCACTG GGGCCTGGAT AAGCCACTTC
TGAAACACTG GGAACCTGAG ATTCCAGCCC CCATGTCAGA GCTGACAGAG ACAGTGGTCT
GCGCCCTGGG ATTGATCGTG GGCCTTGTGG GCATCGTGGT GGGCACTGTC TTCATCATTC
AAGGCCTACG CTCAGGTGGG TCCCTCTAGA CACCAAGGGT CCCTGTGAGT CACACTCCCA
GAAGGGAAGG TGCACTGCCC CGCCTACAAG AGCTGAAAAG TGGATGTGCT CCACGACCCT
AGAACTATTT TCTGGCCAAA ATTCATCATT ATACCTTCTC CCCTTCCTAA ATTTCTTCTT
CTCCACCTCT TCTCCGGGAA CTTTAAGGGG GCTGTGTTCA TCCTCCGAAA ATTCATATGC
CCCTTGGGAA TCCTC
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 369 | e-102 | O | ||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 369 | e-102 | O | ||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 369 | e-102 | O | ||
LOC650946 | similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) | 369 | e-102 | O | ||
HLA-DQA2 | major histocompatibility complex, class II, DQ alpha 2 | 358 | 5e-99 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 355 | 3e-98 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 352 | 3e-97 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 352 | 3e-97 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 352 | 3e-97 | O | ||
HLA-DQA1 | major histocompatibility complex, class II, DQ alpha 1 | 352 | 3e-97 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
H2-Aa | histocompatibility 2, class II antigen A, alpha | 323 | 2e-88 | O | ||
H2-Oa | histocompatibility 2, O region alpha locus | 232 | 5e-61 | O | ||
H2-Ea | histocompatibility 2, class II antigen E alpha | 217 | 1e-56 | O | ||
H2-DMa | histocompatibility 2, class II, locus DMa | 80.5 | 3e-15 | O | ||
H2-Ob | histocompatibility 2, O region beta locus | 70.9 | 2e-12 | O | ||
B2m | beta-2 microglobulin | 67.4 | 2e-11 | O | ||
H2-Eb1 | histocompatibility 2, class II antigen E beta | 63.9 | 3e-10 | O | ||
H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 | 63.5 | 3e-10 | O | ||
A130038H09Rik | RIKEN cDNA A130038H09 gene | 63.5 | 3e-10 | O | ||
H2-DMb2 | histocompatibility 2, class II, locus Mb2 | 63.5 | 3e-10 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
dqa1 | MHC class II DLA DQalpha chain | 363 | e-100 | O | ||
LOC474869 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 233 | 2e-61 | O | ||
DLA-DRA1 | MHC class II DR alpha chain | 227 | 1e-59 | O | ||
LOC474869 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 99 | 7e-21 | O | ||
HLA-DMA | major histocompatibility complex, class II, DM alpha | 76.3 | 5e-14 | |||
DLA-DQB1 | MHC class II DLA-DQ beta chain b1 domain | 68.2 | 1e-11 | |||
DLA-DRB1 | MHC class II DLA DRB1 beta chain | 67.8 | 2e-11 | |||
HLA-DMA | major histocompatibility complex, class II, DM alpha | 67.8 | 2e-11 | O | ||
LOC478284 | similar to beta-2-microglobulin precursor | 65.5 | 8e-11 | O | ||
LOC478284 | similar to beta-2-microglobulin precursor | 65.5 | 8e-11 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
BOLA-DQA1 | histocompatibility complex, class II, DQ alpha, type 1 | 374 | e-104 | O | ||
BOLA-DQA | major histocompatibility complex, class II, DQ alpha | 349 | 2e-96 | O | ||
BOLA-DQA2 | major histocompatibility complex, class II, DQ alpha 1 | 330 | 1e-90 | O | ||
BOLA-DYA | major histocompatibility complex, class II, DY alpha | 298 | 5e-81 | O | ||
LOC525727 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 241 | 5e-64 | O | ||
LOC525727 | similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) | 239 | 3e-63 | O | ||
BOLA-DRA | major histocompatibility complex, class II, DR alpha | 228 | 6e-60 | O | ||
B2M | beta-2-microglobulin | 71.2 | 1e-12 | O | ||
BOLA-DMA | major histocompatibility complex, class II, DM alpha-chain, expressed | 68.2 | 1e-11 | O | ||
BOLA-DOB | major histocompatibility complex, class II, DO beta | 65.5 | 7e-11 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
SLA-DMA | SLA-DM alpha chain | 73.9 | 6e-15 | O | ||
B2M | beta 2-microglobulin | 71.2 | 4e-14 | O | ||
SLA-7 | swine leukocyte antigen 7 | 51.6 | 3e-08 |
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