[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-050240
Length:
1,035
Sequence:
[FASTA format sequence]
TTTGAGCTTG GACTATAACX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXCAGTATCC ATTTGAGTGG GACTTGCCTG CTCCCTTCAC
ACAGTGTCCT CTCCTGTTCT CCATGCATGT TGCATCTGTG TTTCTCACGA CGCTTTTGGA
TGGCCGCTCT GACCATGCAT GCTGGTGGTG CTGGACCCCT CCCTTGACTT TGGACACTGA
CACCCCAACG CATTGCTTCT TTATGGAGAA ATATCGAGTG TCATTTCTTC AACCGGACCG
AGCGCGTGAC GTTATTGGAC ACGCATTACT ATAACAGAAA GGAGATCTTG CCCTTCGATA
CCTACGTGAG CTACTACCGG GCAGTGACTG AGCTGGGGCG GCCACAACCA ATGACTGGAA
CAGCCGGAAT GACATCCTGG ACCAGAGGCG AGCTGAGGTG GACACGTACT GCCGACTCCA
CTACAGGATC TCGGATACAT TCCTGGTGCC GAGGGCAGCT TACCCCACCG AGACCGTGTA
TCCTGGAAAA ACCCATCCCC TGCAGCACCA CGACCTCCTG GGCTGCTCTG TAACCCGGTT
CTACCCAGGC CACATGCAGG TCATGTGGTT CCGGAATGGA CAAGAAGACG CGGCTGGTGT
GGTCTCCACA TGCCTGATAC CTANAGGAGA CTGGACCTTC GCTACCAAGG CTATGCATGA
AACTGCTCCT CAGAGTGGAC AGGTCTACAG CTGCCGAGTG GAGCACCCCA GCCAGACCAA
TCTCGTCACA GTGGAATGCA CGGCACGGTT CTGAATCTGC TCAGGATCAC TATGATGAGT
CGGGGTCCTG CGCTTCCGTC CTGGATCTGC TTCTTGGTTG GCGGCGGGGC TGCCCCTCCT
ACGTTCACAA AACGGGAATG GGAGCCCTTG AACCTTCAAA CAAACATGGC CCCCCTGAAT
CTTAAGCTCC TACGTTGAGG GACCCTTCCC AAGGCAGGCC ACCGGCCAGT TGCCCAACCC
CCTTTGCCCA GCATTGGAAA AGGGCTCCCG GGGTTAGGAA TCTCAAAAAC CTTTCCCCCA
AAAAAAAAAT TCTTTTCAGT GAAAAATTTC CCTTTTC
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
HLA-DRB1 | major histocompatibility complex, class II, DR beta 1 | 176 | 5e-56 | O | ||
HLA-DRB3 | major histocompatibility complex, class II, DR beta 3 | 176 | 1e-56 | O | ||
HLA-DRB4 | major histocompatibility complex, class II, DR beta 4 | 175 | 9e-52 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 174 | 6e-54 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 174 | 6e-54 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 171 | 3e-53 | O | ||
HLA-DRB5 | major histocompatibility complex, class II, DR beta 5 | 165 | 7e-52 | O | ||
HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 | 142 | 7e-42 | O | ||
HLA-DPB1 | major histocompatibility complex, class II, DP beta 1 | 140 | 3e-41 | O | ||
HLA-DQB2 | major histocompatibility complex, class II, DQ beta 2 | 140 | 8e-40 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
H2-Eb1 | histocompatibility 2, class II antigen E beta | 180 | 1e-55 | O | ||
A130038H09Rik | RIKEN cDNA A130038H09 gene | 144 | 3e-41 | O | ||
H2-Ob | histocompatibility 2, O region beta locus | 136 | 4e-32 | O | ||
H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 | 127 | 1e-37 | O | ||
Mr1 | major histocompatibility complex, class I-related | 52.8 | 6e-07 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
DLA-DRB1 | MHC class II DLA DRB1 beta chain | 168 | 3e-53 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 141 | 7e-40 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 140 | 1e-39 | O | ||
DLA-DQB1 | MHC class II DLA-DQ beta chain b1 domain | 139 | 3e-44 | O | ||
LOC607827 | similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) | 55.5 | 9e-08 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
BoLA-DRB3 | major histocompatibility complex, class II, DRB3 | 173 | 1e-56 | O | ||
LOC538700 | similar to major histocompatibility complex, class II, DR beta 5 precursor | 164 | 1e-45 | O | ||
LOC618722 | similar to H-2 class II histocompatibility antigen, I-E beta chain precursor | 151 | 7e-37 | O | ||
BOLA-DQB | major histocompatibility complex, class II, DQ beta | 140 | 1e-40 | O | ||
BLA-DQB | MHC class II antigen | 138 | 8e-40 | O | ||
BOLA-DOB | major histocompatibility complex, class II, DO beta | 135 | 2e-36 | O | ||
BOLA-DYB | major histocompatibility complex, class II, DY beta | 132 | 5e-38 | O | ||
LOC617421 | similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7) | 115 | 6e-26 | O | ||
BOLA-DMB | major histocompatibility complex, class II, DM beta-chain, expressed | 62 | 7e-10 | O | ||
BOLA-DRA | major histocompatibility complex, class II, DR alpha | 50.1 | 3e-06 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
SLA-7 | swine leukocyte antigen 7 | 45.1 | 3e-06 |
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