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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-050240

Length: 1,035

Sequence [FASTA format sequence]
TTTGAGCTTG GACTATAACX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XX
CAGTATCC ATTTGAGTGG GACTTGCCTG CTCCCTTCAC
ACAGTGTCCT CTCCTGTTCT CCATGCATGT TGCATCTGTG TTTCTCACGA CGCTTTTGGA
TGGCCGCTCT GACCATGCAT GCTGGTGGTG CTGGACCCCT CCCTTGACTT TGGACACTGA
CACCCCAACG CATTGCTTCT TTATGGAGAA ATATCGAGTG TCATTTCTTC AACCGGACCG
AGCGCGTGAC GTTATTGGAC ACGCATTACT ATAACAGAAA GGAGATCTTG CCCTTCGATA
CCTACGTGAG CTACTACCGG GCAGTGACTG AGCTGGGGCG GCCACAACCA ATGACTGGAA
CAGCCGGAAT GACATCCTGG ACCAGAGGCG AGCTGAGGTG GACACGTACT GCCGACTCCA
CTACAGGATC TCGGATACAT TCCTGGTGCC GAGGGCAGCT TACCCCACCG AGACCGTGTA
TCCTGGAAAA ACCCATCCCC TGCAGCACCA CGACCTCCTG GGCTGCTCTG TAACCCGGTT
CTACCCAGGC CACATGCAGG TCATGTGGTT CCGGAATGGA CAAGAAGACG CGGCTGGTGT
GGTCTCCACA TGCCTGATAC CTANAGGAGA CTGGACCTTC GCTACCAAGG CTATGCATGA
AACTGCTCCT CAGAGTGGAC AGGTCTACAG CTGCCGAGTG GAGCACCCCA GCCAGACCAA
TCTCGTCACA GTGGAATGCA CGGCACGGTT CTGAATCTGC TCAGGATCAC TATGATGAGT
CGGGGTCCTG CGCTTCCGTC CTGGATCTGC TTCTTGGTTG GCGGCGGGGC TGCCCCTCCT
ACGTTCACAA AACGGGAATG GGAGCCCTTG AACCTTCAAA CAAACATGGC CCCCCTGAAT
CTTAAGCTCC TACGTTGAGG GACCCTTCCC AAGGCAGGCC ACCGGCCAGT TGCCCAACCC
CCTTTGCCCA GCATTGGAAA AGGGCTCCCG GGGTTAGGAA TCTCAAAAAC CTTTCCCCCA
AAAAAAAAAT TCTTTTCAGT GAAAAATTTC CCTTTTC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DRB1major histocompatibility complex, class II, DR beta 11765e-56O
Contig/Assembly ProteinHLA-DRB3major histocompatibility complex, class II, DR beta 31761e-56O
Contig/Assembly ProteinHLA-DRB4major histocompatibility complex, class II, DR beta 41759e-52O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)1746e-54O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)1746e-54O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)1713e-53O
Contig/Assembly ProteinHLA-DRB5major histocompatibility complex, class II, DR beta 51657e-52O
Contig/Assembly ProteinHLA-DQB1major histocompatibility complex, class II, DQ beta 11427e-42O
Contig/Assembly ProteinHLA-DPB1major histocompatibility complex, class II, DP beta 11403e-41O
Contig/Assembly ProteinHLA-DQB2major histocompatibility complex, class II, DQ beta 21408e-40O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Eb1histocompatibility 2, class II antigen E beta1801e-55O
Contig/Assembly ProteinA130038H09RikRIKEN cDNA A130038H09 gene1443e-41O
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus1364e-32O
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 11271e-37O
Contig/Assembly ProteinMr1major histocompatibility complex, class I-related52.86e-07


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDLA-DRB1MHC class II DLA DRB1 beta chain1683e-53O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta1417e-40O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta1401e-39O
Contig/Assembly ProteinDLA-DQB1MHC class II DLA-DQ beta chain b1 domain1393e-44O
Contig/Assembly ProteinLOC607827similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB)55.59e-08O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBoLA-DRB3major histocompatibility complex, class II, DRB31731e-56O
Contig/Assembly ProteinLOC538700similar to major histocompatibility complex, class II, DR beta 5 precursor1641e-45O
Contig/Assembly ProteinLOC618722similar to H-2 class II histocompatibility antigen, I-E beta chain precursor1517e-37O
Contig/Assembly ProteinBOLA-DQBmajor histocompatibility complex, class II, DQ beta1401e-40O
Contig/Assembly ProteinBLA-DQBMHC class II antigen1388e-40O
Contig/Assembly ProteinBOLA-DOBmajor histocompatibility complex, class II, DO beta1352e-36O
Contig/Assembly ProteinBOLA-DYBmajor histocompatibility complex, class II, DY beta1325e-38O
Contig/Assembly ProteinLOC617421similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7)1156e-26O
Contig/Assembly ProteinBOLA-DMBmajor histocompatibility complex, class II, DM beta-chain, expressed627e-10O
Contig/Assembly ProteinBOLA-DRAmajor histocompatibility complex, class II, DR alpha50.13e-06O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLA-7swine leukocyte antigen 745.13e-06


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
SPL010060H10SPL01_0060_H10.b  AK350429