[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-055347
Length:
1,069
Sequence:
[FASTA format sequence]
NNNNGGCTAG TGACTTNACX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX TTCCTCTGAG CCAGGGCCCG CGGGTCAGGC CAGCGCCCAC
CTAGGAGGGA GCCCCCGGGG GCGGGCGGCC GCGGGCCCAT GAACAGCGGG GCCCCCGGGA
CGCTGGCGGT GGGGAGAGTG AAATTCTACT GCCGGCACCG CGGGGAGGCC CCGTGAAGTT
CTGCCGCTTC TCCCCTGATG GCCGCCTGTT TGCCAGCACT TCCAGTGACT GCACCATCCG
CCTGTGGGAT GTCGCAAAAG TCGAGTGTCT GCAGGTCCTA AAGGGTCACC AGCGGAGTGT
GGAGACAGTC AGCTTCAGCC CTGACTCAAA GCAGCTGGCA TCAGGTGGCT GGGACAAGAG
GGTGATGCTC TGGGAAGTGC AGTCAGGCCA GGTGCTGCGC CACTTAGTGG GACACCGAGA
CTCCATCCAG AGCAGTGACT TTGCACCCAG CTCAGACTGC CTGGCCACCG GCTCTTGGGA
TTCCACTATC CGCATGTGGG ACCTGCGAGG AGGGACTGGA GCCATCTTCC ACCAGGAGCT
GGAGGGCCAC AGGGGCAACA TCAGCTGCCT GTGCTTCTCA GCATTTGGCC TGTTGGTCAA
AGTCTGGGAC TGCAACACAG GAAGGTGCAC TGATACCCTG AAGGGAGTCC TGGATGTGGC
CCACAGCTGC GCCTTTACCC CAGATGGGAA GCTCTTAGTG TCTGGAACTG CTGATCAGGC
AAGATGCCAA GTCCACTGCA AATCACCCAG AGCTGCCCAA AGATAACATC ACACGTATGG
CTCAGATCCC TGTGGCCAGG ACTGCCACAG CCCCACACCA NGGCAGCCGA CAGCAGCTAG
CCTGCTGGAA TCCAGCAAAC ACCAGGTAAC CATACACAGT AAAGGCCGCG CCAGCCCATC
TCTCCAGAAG TTAGTTCAAA TGCCTATAAA CACNAAGCAA CATCAAAAAA AAAAAAAAAA
AAAAAAAGGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXCCNTATCT CTGGGGGGAC TATTGGACAA CTCCCCCGAA TTTAAGCCTA GGAAATAAAA
TTTTANGGTA AGGGGTAAAA ACCCCATCCT GCCGCGAATT TTCCTTCGTG TATTTTAAAT
TTACCGGGCC CGTTTCTTTT TGTGTTTTTC CCCCGCGT
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC644529 | similar to CG7704-PA | 307 | 1e-87 | |||
LOC644529 | similar to CG7704-PA | 303 | 2e-86 | |||
LOC644529 | similar to CG7704-PA | 167 | 2e-41 | O | ||
LOC644529 | similar to CG7704-PA | 162 | 3e-40 | O | ||
TAF5 | TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa | 119 | 4e-27 | |||
KATNB1 | katanin p80 (WD repeat containing) subunit B 1 | 108 | 6e-24 | O | ||
TAF5L | TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa | 104 | 1e-22 | |||
WDR5B | WD repeat domain 5B | 103 | 3e-22 | O | ||
WDR5 | WD repeat domain 5 | 103 | 3e-22 | O | ||
WDR5 | WD repeat domain 5 | 103 | 3e-22 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
1700123D08Rik | RIKEN cDNA 1700123D08 gene | 268 | 5e-75 | |||
Taf5 | TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor | 119 | 5e-27 | |||
Wdr5b | WD repeat domain 5B | 108 | 1e-23 | O | ||
Katnb1 | katanin p80 (WD40-containing) subunit B 1 | 108 | 7e-24 | O | ||
Taf5l | TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor | 107 | 3e-23 | |||
Wdr5 | WD repeat domain 5 | 103 | 4e-22 | O | ||
Wsb2 | WD repeat and SOCS box-containing 2 | 99.8 | 4e-21 | |||
4930563E19Rik | RIKEN cDNA 4930563E19 gene | 97.1 | 3e-20 | |||
Wdr51b | WD repeat domain 51B | 95.1 | 1e-19 | |||
Prpf4 | PRP4 pre-mRNA processing factor 4 homolog (yeast) | 94.4 | 2e-19 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC612852 | similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin) | 108 | 7e-24 | O | ||
LOC612852 | similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin) | 108 | 7e-24 | O | ||
LOC488982 | similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF associated factor 65 beta) (PAF65-beta) | 105 | 1e-22 | |||
LOC477397 | similar to CG7568-PA | 101 | 1e-21 | |||
LOC477500 | similar to WD repeat and SOCS box containing protein 2 (WSB-2) (CS box-containing WD protein) | 97.4 | 2e-20 | |||
LOC608113 | similar to WD repeat domain 5 | 95.1 | 1e-19 | O | ||
LOC474807 | similar to PRP4 pre-mRNA processing factor 4 homolog | 94.4 | 2e-19 | |||
LOC477500 | similar to WD repeat and SOCS box containing protein 2 (WSB-2) (CS box-containing WD protein) | 93.6 | 3e-19 | |||
LOC480619 | similar to WD SOCS-box protein 1 isoform 1 | 92 | 9e-19 | O | ||
LOC480619 | similar to WD SOCS-box protein 1 isoform 1 | 92 | 9e-19 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC516001 | similar to TBP-associated factor 5 | 119 | 4e-27 | |||
LOC510413 | similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta) | 108 | 7e-24 | |||
LOC538699 | similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta) | 107 | 1e-23 | |||
LOC530118 | similar to CG7568-PA | 101 | 9e-22 | |||
LOC524817 | similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta) | 100 | 2e-21 | |||
WSB2 | WD SOCS-box protein 2 | 97.8 | 1e-20 | |||
MGC129043 | similar to U4/U6 small nuclear ribonucleoprotein Prp4 (U4/U6 snRNP 60 kDa protein) (WD splicing factor Prp4) (hPrp4) | 95.1 | 8e-20 | |||
FLJ10458 | Notchless gene homolog | 94.4 | 1e-19 | |||
WSB2 | WD SOCS-box protein 2 | 94 | 2e-19 | |||
LOC508813 | similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin) | 93.2 | 3e-19 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
PAFAH1B1 | platelet-activating factor acetylhydrolase Ib-alpha subunit | 89.4 | 1e-19 | |||
GNB2L1 | G-beta like protein | 79 | 2e-16 | O | ||
FZR1 | fizzy/cell division cycle 20 related 1 | 51.2 | 4e-08 |
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