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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-055347

Length: 1,069

Sequence [FASTA format sequence]
NNNNGGCTAG TGACTTNACX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX
TTCCTCTGAG CCAGGGCCCG CGGGTCAGGC CAGCGCCCAC
CTAGGAGGGA GCCCCCGGGG GCGGGCGGCC GCGGGCCCAT GAACAGCGGG GCCCCCGGGA
CGCTGGCGGT GGGGAGAGTG AAATTCTACT GCCGGCACCG CGGGGAGGCC CCGTGAAGTT
CTGCCGCTTC TCCCCTGATG GCCGCCTGTT TGCCAGCACT TCCAGTGACT GCACCATCCG
CCTGTGGGAT GTCGCAAAAG TCGAGTGTCT GCAGGTCCTA AAGGGTCACC AGCGGAGTGT
GGAGACAGTC AGCTTCAGCC CTGACTCAAA GCAGCTGGCA TCAGGTGGCT GGGACAAGAG
GGTGATGCTC TGGGAAGTGC AGTCAGGCCA GGTGCTGCGC CACTTAGTGG GACACCGAGA
CTCCATCCAG AGCAGTGACT TTGCACCCAG CTCAGACTGC CTGGCCACCG GCTCTTGGGA
TTCCACTATC CGCATGTGGG ACCTGCGAGG AGGGACTGGA GCCATCTTCC ACCAGGAGCT
GGAGGGCCAC AGGGGCAACA TCAGCTGCCT GTGCTTCTCA GCATTTGGCC TGTTGGTCAA
AGTCTGGGAC TGCAACACAG GAAGGTGCAC TGATACCCTG AAGGGAGTCC TGGATGTGGC
CCACAGCTGC GCCTTTACCC CAGATGGGAA GCTCTTAGTG TCTGGAACTG CTGATCAGGC
AAGATGCCAA GTCCACTGCA AATCACCCAG AGCTGCCCAA AGATAACATC ACACGTATGG
CTCAGATCCC TGTGGCCAGG ACTGCCACAG CCCCACACCA NGGCAGCCGA CAGCAGCTAG
CCTGCTGGAA TCCAGCAAAC ACCAGGTAAC CATACACAGT AAAGGCCGCG CCAGCCCATC
TCTCCAGAAG TTAGTTCAAA TGCCTATAAA CACNAAGCAA CATCAAAAAA AAAAAAAAAA
AAAAAAAGGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXCCNTATCT CTGGGGGGAC TATTGGACAA CTCCCCCGAA TTTAAGCCTA GGAAATAAAA
TTTTANGGTA AGGGGTAAAA ACCCCATCCT GCCGCGAATT TTCCTTCGTG TATTTTAAAT
TTACCGGGCC CGTTTCTTTT TGTGTTTTTC CCCCGCGT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC644529similar to CG7704-PA3071e-87
Contig/Assembly ProteinLOC644529similar to CG7704-PA3032e-86
Contig/Assembly ProteinLOC644529similar to CG7704-PA1672e-41O
Contig/Assembly ProteinLOC644529similar to CG7704-PA1623e-40O
Contig/Assembly ProteinTAF5TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa1194e-27
Contig/Assembly ProteinKATNB1katanin p80 (WD repeat containing) subunit B 11086e-24O
Contig/Assembly ProteinTAF5LTAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa1041e-22
Contig/Assembly ProteinWDR5BWD repeat domain 5B1033e-22O
Contig/Assembly ProteinWDR5WD repeat domain 51033e-22O
Contig/Assembly ProteinWDR5WD repeat domain 51033e-22O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly Protein1700123D08RikRIKEN cDNA 1700123D08 gene2685e-75
Contig/Assembly ProteinTaf5TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor1195e-27
Contig/Assembly ProteinWdr5bWD repeat domain 5B1081e-23O
Contig/Assembly ProteinKatnb1katanin p80 (WD40-containing) subunit B 11087e-24O
Contig/Assembly ProteinTaf5lTAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor1073e-23
Contig/Assembly ProteinWdr5WD repeat domain 51034e-22O
Contig/Assembly ProteinWsb2WD repeat and SOCS box-containing 299.84e-21
Contig/Assembly Protein4930563E19RikRIKEN cDNA 4930563E19 gene97.13e-20
Contig/Assembly ProteinWdr51bWD repeat domain 51B95.11e-19
Contig/Assembly ProteinPrpf4PRP4 pre-mRNA processing factor 4 homolog (yeast)94.42e-19


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC612852similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin)1087e-24O
Contig/Assembly ProteinLOC612852similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin)1087e-24O
Contig/Assembly ProteinLOC488982similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF associated factor 65 beta) (PAF65-beta)1051e-22
Contig/Assembly ProteinLOC477397similar to CG7568-PA1011e-21
Contig/Assembly ProteinLOC477500similar to WD repeat and SOCS box containing protein 2 (WSB-2) (CS box-containing WD protein)97.42e-20
Contig/Assembly ProteinLOC608113similar to WD repeat domain 595.11e-19O
Contig/Assembly ProteinLOC474807similar to PRP4 pre-mRNA processing factor 4 homolog94.42e-19
Contig/Assembly ProteinLOC477500similar to WD repeat and SOCS box containing protein 2 (WSB-2) (CS box-containing WD protein)93.63e-19
Contig/Assembly ProteinLOC480619similar to WD SOCS-box protein 1 isoform 1929e-19O
Contig/Assembly ProteinLOC480619similar to WD SOCS-box protein 1 isoform 1929e-19


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC516001similar to TBP-associated factor 51194e-27
Contig/Assembly ProteinLOC510413similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta)1087e-24
Contig/Assembly ProteinLOC538699similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta)1071e-23
Contig/Assembly ProteinLOC530118similar to CG7568-PA1019e-22
Contig/Assembly ProteinLOC524817similar to TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta)1002e-21
Contig/Assembly ProteinWSB2WD SOCS-box protein 297.81e-20
Contig/Assembly ProteinMGC129043similar to U4/U6 small nuclear ribonucleoprotein Prp4 (U4/U6 snRNP 60 kDa protein) (WD splicing factor Prp4) (hPrp4)95.18e-20
Contig/Assembly ProteinFLJ10458Notchless gene homolog94.41e-19
Contig/Assembly ProteinWSB2WD SOCS-box protein 2942e-19
Contig/Assembly ProteinLOC508813similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin)93.23e-19O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPAFAH1B1platelet-activating factor acetylhydrolase Ib-alpha subunit89.41e-19
Contig/Assembly ProteinGNB2L1G-beta like protein792e-16O
Contig/Assembly ProteinFZR1fizzy/cell division cycle 20 related 151.24e-08


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
TCH010087D07TCH01_0087_D07.bCJ028776