[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-056139
Length:
821
Sequence:
[FASTA format sequence]
NTTACTGCGG TGGCTCTGGC CAATATCCAT TTGAGTGGGA CTTGCCTGCT CCCTTCCACA
CGTTCCTCTC CTGTTCTCCG GCATGTTGCA TCTGTGTTTC TCCATAAGCT TTTGGATGGC
GGCTCTGACC GTGATGCTGG TGGTGCTGAG CCCTCCCTTG GCTTTGGCCA TGGACACCCC
ACCGCATTTC TTCTTTATGG ATAAATTCGA GTGTCATTTC TTCCACGGGA CCCACCGGGT
GAGGTTATTG AACAGGCCTT ACTATAACGG AAAGGAGATC TTGCGCTTCG ATAGCTCACG
TGTGCTATTA CCGGGCGGTG ACTGAACTGG GGCGGCCAGA ACCCAAGGAC TGGATCACCC
TGAACGACAT CCTGGAACAC AGGCTGGCGG ACGTGGACAC TTACTGCACA CACAACTACA
GGATCTCGGA TACATTCCTG GTGCCACTTC GAGCTGAGCC CACGGGGACA GTGTATACTG
CTAAGACCCA GCCCCTGCGG CACATCAACC TCCTGGTCTG CTCTGTGACC GGGTTCTACC
CTCGCAACGA TGGAGGTCAG GTGGTTCCTG AATGGCCATT ATCAGGCGGC AGGTGTGGTC
TCCACACGCC TGATGCCTAA TGGAGACTGT ACCTTCCTTA CCATGGTGAT GCTTGAAACG
GTTCCTCAGA GTGGATAGGT CTACAGCTAC CGAGTGGAGC ACCCCAGCCT GACTAGCCCC
GTCTCACTGA AGTGCATGGC ACTGACTGAA TCTGATCAGG ACAAGATGAT GCATGGGATC
GAGGGCTTCT TCCTGAGTCT GCCCTTTGCT AGCTGAGGGG CTGTTCATCT ACTTCAAGAA
TCAGAAAGGA CGCCCTGCGC ATCATCCCAC ATGCCCTCAG AACTGAATTG CGCGTGGTGA
AATTACCAAT CCAGCATCCT CTGTTCCAAC AGTCTCTCCT CAAAAAAAAG TTCCTGAAAT
GCCTCTCGGT CCCCCACAAA AAAACCTCTT CCACCAAAAT CACCCTTTGC TCCTGGTTAA
AGGACCCCTG TAAAAAAAAG CCTTTTTAAG GGTTTTCCCA GCCATCCCCC CTTAAACCTG
GAAGTTTCCT GGATTAGTTT TCAGGGGCCC CACGAAAAAT TTTCCCCTTC CTTTTTTTTT
ACAGGAAGGG GGCGCCTGTT TTTTTCCCAC ATATTTTGCC CACCCGGGTT AATCTAAACC
TGGGCCCTGC CCGTATTAAC CCTTTTG
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
HLA-DRB1 | major histocompatibility complex, class II, DR beta 1 | 107 | 7e-41 | O | ||
LOC650985 | similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7) | 103 | 6e-32 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 103 | 2e-22 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 103 | 1e-40 | O | ||
LOC652479 | similar to major histocompatibility complex, class II, DR beta 4 precursor | 102 | 4e-24 | O | ||
HLA-DRB4 | major histocompatibility complex, class II, DR beta 4 | 102 | 4e-24 | O | ||
LOC651845 | similar to HLA class II histocompatibility antigen, DRB1-1 beta chain precursor (MHC class I antigen DRB1*1) (DR-1) (DR1) | 101 | 7e-24 | |||
HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 | 94 | 4e-48 | O | ||
LOC650557 | similar to HLA class II histocompatibility antigen, DQ(W1.1) beta chain precursor (DQB1*0501) | 92.4 | 3e-26 | O | ||
HLA-DQB2 | major histocompatibility complex, class II, DQ beta 2 | 72.4 | 2e-25 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
H2-Eb1 | histocompatibility 2, class II antigen E beta | 109 | 5e-64 | O | ||
A130038H09Rik | RIKEN cDNA A130038H09 gene | 89.4 | 4e-18 | O | ||
H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 | 84 | 8e-41 | O | ||
H2-Ob | histocompatibility 2, O region beta locus | 78.6 | 7e-15 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
DLA-DRB1 | MHC class II DLA DRB1 beta chain | 99.8 | 2e-38 | O | ||
DLA-DQB1 | MHC class II DLA-DQ beta chain b1 domain | 91.7 | 9e-54 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 83.2 | 3e-16 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 81.3 | 3e-23 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
BoLA-DRB3 | major histocompatibility complex, class II, DRB3 | 105 | 1e-25 | O | ||
LOC538700 | similar to major histocompatibility complex, class II, DR beta 5 precursor | 104 | 6e-53 | O | ||
LOC618722 | similar to H-2 class II histocompatibility antigen, I-E beta chain precursor | 100 | 2e-21 | O | ||
BOLA-DQB | major histocompatibility complex, class II, DQ beta | 94 | 1e-19 | O | ||
BLA-DQB | MHC class II antigen | 91.7 | 4e-48 | O | ||
LOC617421 | similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7) | 91.3 | 2e-28 | O | ||
BOLA-DYB | major histocompatibility complex, class II, DY beta | 84 | 2e-42 | O | ||
BOLA-DOB | major histocompatibility complex, class II, DO beta | 75.1 | 4e-19 | O |
Locus | Definition | Score | E value | FL |
---|
|