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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-056139

Length: 821

Sequence [FASTA format sequence]
NTTACTGCGG TGGCTCTGGC CAATATCCAT TTGAGTGGGA CTTGCCTGCT CCCTTCCACA
CGTTCCTCTC CTGTTCTCCG GCATGTTGCA TCTGTGTTTC TCCATAAGCT TTTGGATGGC
GGCTCTGACC GTGATGCTGG TGGTGCTGAG CCCTCCCTTG GCTTTGGCCA TGGACACCCC
ACCGCATTTC TTCTTTATGG ATAAATTCGA GTGTCATTTC TTCCACGGGA CCCACCGGGT
GAGGTTATTG AACAGGCCTT ACTATAACGG AAAGGAGATC TTGCGCTTCG ATAGCTCACG
TGTGCTATTA CCGGGCGGTG ACTGAACTGG GGCGGCCAGA ACCCAAGGAC TGGATCACCC
TGAACGACAT CCTGGAACAC AGGCTGGCGG ACGTGGACAC TTACTGCACA CACAACTACA
GGATCTCGGA TACATTCCTG GTGCCACTTC GAGCTGAGCC CACGGGGACA GTGTATACTG
CTAAGACCCA GCCCCTGCGG CACATCAACC TCCTGGTCTG CTCTGTGACC GGGTTCTACC
CTCGCAACGA TGGAGGTCAG GTGGTTCCTG AATGGCCATT ATCAGGCGGC AGGTGTGGTC
TCCACACGCC TGATGCCTAA TGGAGACTGT ACCTTCCTTA CCATGGTGAT GCTTGAAACG
GTTCCTCAGA GTGGATAGGT CTACAGCTAC CGAGTGGAGC ACCCCAGCCT GACTAGCCCC
GTCTCACTGA AGTGCATGGC ACTGACTGAA TCTGATCAGG ACAAGATGAT GCATGGGATC
GAGGGCTTCT TCCTGAGTCT GCCCTTTGCT AGCTGAGGGG CTGTTCATCT ACTTCAAGAA
TCAGAAAGGA CGCCCTGCGC ATCATCCCAC ATGCCCTCAG AACTGAATTG CGCGTGGTGA
AATTACCAAT CCAGCATCCT CTGTTCCAAC AGTCTCTCCT CAAAAAAAAG TTCCTGAAAT
GCCTCTCGGT CCCCCACAAA AAAACCTCTT CCACCAAAAT CACCCTTTGC TCCTGGTTAA
AGGACCCCTG TAAAAAAAAG CCTTTTTAAG GGTTTTCCCA GCCATCCCCC CTTAAACCTG
GAAGTTTCCT GGATTAGTTT TCAGGGGCCC CACGAAAAAT TTTCCCCTTC CTTTTTTTTT
ACAGGAAGGG GGCGCCTGTT TTTTTCCCAC ATATTTTGCC CACCCGGGTT AATCTAAACC
TGGGCCCTGC CCGTATTAAC CCTTTTG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DRB1major histocompatibility complex, class II, DR beta 11077e-41O
Contig/Assembly ProteinLOC650985similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7)1036e-32O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)1032e-22O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)1031e-40O
Contig/Assembly ProteinLOC652479similar to major histocompatibility complex, class II, DR beta 4 precursor1024e-24O
Contig/Assembly ProteinHLA-DRB4major histocompatibility complex, class II, DR beta 41024e-24O
Contig/Assembly ProteinLOC651845similar to HLA class II histocompatibility antigen, DRB1-1 beta chain precursor (MHC class I antigen DRB1*1) (DR-1) (DR1)1017e-24
Contig/Assembly ProteinHLA-DQB1major histocompatibility complex, class II, DQ beta 1944e-48O
Contig/Assembly ProteinLOC650557similar to HLA class II histocompatibility antigen, DQ(W1.1) beta chain precursor (DQB1*0501)92.43e-26O
Contig/Assembly ProteinHLA-DQB2major histocompatibility complex, class II, DQ beta 272.42e-25O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Eb1histocompatibility 2, class II antigen E beta1095e-64O
Contig/Assembly ProteinA130038H09RikRIKEN cDNA A130038H09 gene89.44e-18O
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 1848e-41O
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus78.67e-15O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDLA-DRB1MHC class II DLA DRB1 beta chain99.82e-38O
Contig/Assembly ProteinDLA-DQB1MHC class II DLA-DQ beta chain b1 domain91.79e-54O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta83.23e-16O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta81.33e-23O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBoLA-DRB3major histocompatibility complex, class II, DRB31051e-25O
Contig/Assembly ProteinLOC538700similar to major histocompatibility complex, class II, DR beta 5 precursor1046e-53O
Contig/Assembly ProteinLOC618722similar to H-2 class II histocompatibility antigen, I-E beta chain precursor1002e-21O
Contig/Assembly ProteinBOLA-DQBmajor histocompatibility complex, class II, DQ beta941e-19O
Contig/Assembly ProteinBLA-DQBMHC class II antigen91.74e-48O
Contig/Assembly ProteinLOC617421similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7)91.32e-28O
Contig/Assembly ProteinBOLA-DYBmajor histocompatibility complex, class II, DY beta842e-42O
Contig/Assembly ProteinBOLA-DOBmajor histocompatibility complex, class II, DO beta75.14e-19O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
TES010001G07TES01_0001_G07.b