[Help]

[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-056148

Length: 1,174

Sequence [FASTA format sequence]
TTCCTGCTGT TGCTATGGAG CCGGCTGTTG CTGAGCACCC AGGATCGAGA AGAGGCAGAG
GAAAGGGAAG CAGAGAGAAG CAGCCAAGAG TTGGAGCCAG ACCAGGAGGA GCCCGAGTGG
AGTTGAAGTT CCTTTTGCAG AGGCGGCAGC AAGTAAGGCA GTTGAAACGA TGCTGGCTGT
CTTGGGACTG CTCACCTCCT TCCTTTTTTT CCTGTATGTG ACAGCTCCAT CCATCAGGAG
CCCGAGTATA CATTGCCTGC CGAGATGTAC TGAAGGGGGA GTCTGCTGCC AGTGAAATCC
GAGCTGATAC AAAGAACTCC CAGGTGCTGG TGCGGAAACT GGACCTCTCT GATACCAAAT
CCATCCGAGC CTTTGCTGAG GGCTTTCTGA CAGAGGAAAA GCAGCTCCAT ATTCTGATCA
ACAATGCTGG AGTGATGTTG TGTCCATATT CCAAGACAGC GGATGGCTTT GAGACCCACC
TGGGAGTCAA CCACCTGGGC CACTTCCTTC TCACGCACTT GCTCTTGGAG CAGCTGAAGG
CATCTGCTCC CGCACGGGTG GTGAACCTGT CATCCGTGGT CCACCATGCT GGCAAGATTC
GCTTCCACGA CCTCCAGGGT GAGAAGCACT ACAACCGGGG TTTTGCTTAT TGCCACAGCA
AGCTGGCCAA CGTGCTCTTT ACTCGGGAAC TGGCCAAGAG GCTCCAAGGC ACGGGGGTCA
CCACGTACGC AGTGCACCCA GGCATCGTCC AGTCTGAGCT GGTCCGGCAT TCCTTCCTGC
TGTGCCTGCT CTGGCGGCTC TTCTCCCGCT TCCTCAAAAC AGCGCGGGAG GGGGCCCAGA
CCAGCCTGCA CTGCGCCCTG GCCGAGGGCC TGGAGCCCCT GAGCGGCAAG TACTTCAGTG
ACTGCAAGAG GGCCTGGGTG TCGCCCAGGG CCCCGGAATA ACAAAACGGC CAAGCGCTTT
GGGGACGTCA GCTGCGAGCT CCTGGGATCC CATGGGGAGT AAAGCTGCTG GGAAATGCCC
CGCTTGTATC AAGCCTGGGT CCAGGCCATA ACCCAAACGG GGAAAATGGC CCACCCCCAA
GGAACTGACC TGGGCTGGCT TGTGGTCCCA AAAAACTTCC CGGGCTTTTG ATTCCCCGGA
ACCCTTGGAA AAAACTCCCC CCAAACCTAA ACCTCTTTAT CCAGGGTTAA TTCCCGGACA
AAAAA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRDH12retinol dehydrogenase 12 (all-trans/9-cis/11-cis)410e-114O
Contig/Assembly ProteinRDH11retinol dehydrogenase 11 (all-trans/9-cis/11-cis)3316e-91O
Contig/Assembly ProteinRDH14retinol dehydrogenase 14 (all-trans/9-cis/11-cis)2072e-53O
Contig/Assembly ProteinRDH13retinol dehydrogenase 13 (all-trans/9-cis)1911e-48O
Contig/Assembly ProteinMGC23280hypothetical protein MGC232801771e-44O
Contig/Assembly ProteinWWOXWW domain containing oxidoreductase1455e-35
Contig/Assembly ProteinDHRSXdehydrogenase/reductase (SDR family) X-linked1364e-32O
Contig/Assembly ProteinFLJ13639hypothetical protein FLJ1363966.64e-11O
Contig/Assembly ProteinFLJ13639hypothetical protein FLJ1363959.75e-09O
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 159.36e-09


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRdh12retinol dehydrogenase 12372e-103O
Contig/Assembly ProteinRdh11retinol dehydrogenase 113201e-87O
Contig/Assembly ProteinRdh14retinol dehydrogenase 14 (all-trans and 9-cis)2103e-54O
Contig/Assembly ProteinRdh13retinol dehydrogenase 13 (all-trans and 9-cis)1995e-51O
Contig/Assembly ProteinWwoxWW domain-containing oxidoreductase1451e-34
Contig/Assembly ProteinDhrsxdehydrogenase/reductase (SDR family) X chromosome1341e-31O
Contig/Assembly Protein2610209N15RikRIKEN cDNA 2610209N15 gene1312e-30O
Contig/Assembly ProteinDhrs7dehydrogenase/reductase (SDR family) member 750.43e-06O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC490744similar to retinol dehydrogenase 12 (all-trans and 9-cis)415e-116O
Contig/Assembly ProteinLOC480366similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)3255e-89
Contig/Assembly ProteinLOC611373similar to Retinol dehydrogenase 132111e-54O
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)2064e-53O
Contig/Assembly ProteinLOC491173similar to retinol dehydrogenase 11 (predicted)1795e-45O
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)1525e-37O
Contig/Assembly ProteinLOC475790similar to Retinol dehydrogenase 121434e-34
Contig/Assembly ProteinLOC609792similar to dehydrogenase/reductase (SDR family) X-linked1372e-32
Contig/Assembly ProteinLOC610120similar to WW domain-containing oxidoreductase isoform 11102e-24


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDSSDR2double substrate-specificity short chain dehydrogenase/reductase 2408e-114O
Contig/Assembly ProteinLOC505995similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)2618e-70O
Contig/Assembly ProteinLOC505995similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)2547e-68O
Contig/Assembly ProteinMGC139076similar to retinol dehydrogenase 14 (all-trans and 9-cis)2017e-52
Contig/Assembly ProteinMGC139505similar to retinol dehydrogenase 11 (predicted)1842e-46O
Contig/Assembly ProteinLOC507942similar to retinol dehydrogenase 11 (predicted)1372e-32
Contig/Assembly ProteinLOC513482similar to dehydrogenase/reductase (SDR family) X-linked1272e-29O
Contig/Assembly ProteinMGC140618similar to retinol dehydrogenase 13 (all-trans and 9-cis)1225e-28O
Contig/Assembly ProteinLOC507931similar to Retinol dehydrogenase 1393.24e-19O
Contig/Assembly ProteinLOC618792similar to WW domain-containing oxidoreductase isoform 192.85e-19O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
TES010002A10TES01_0002_A10.bCJ030095 AK398111