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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-056727

Length: 1,138

Sequence [FASTA format sequence]
CCGCGTGGCT CTGGTTGTTG GCTCTGGACA GACACACTGA ATCCTAGCTC TGGTCTACCT
GGCTTCTCTG TTACCAAATT GCTCCTTGCC TGGCTGCACC TTCTGCCCTA GACTCACACC
ACCCTCCACT CTCCACGCCA GAGCACATAC ACCACACCAG CCATGTCTTC CAACACTCGA
GTGGCTCTGG TGACTGGGGC AAACAAGGGT ATTGGCTTCG CCATCGTGCG GGACCTGTGC
CGGCAGTTCG CTGGGGACGT GGTGCTCACA GCGAGGGACG TGGCACGAGG CCAGGCAGCC
GTGAAGCAAC TGCAAGCCGA GGGCCTGAGC CCGCGCTTCC ACCAGCTGGA CATCATAGAC
CTGCAGAGCA TCCGTGCCCT GTGTGACTTC CTGCGGAAGG AGTATGGTGG GCTGGATGTG
CTGGTCAACA ACGCGGCCAT CGCCTTCCAG TTGGACAATC CCACACCGTT TCATATTCAG
GCAGAACTGA CTATGAAAAC AAACTTCATG GGAACCCGAA ATGTGTGCAC AGAGCTTCTG
CCTCTAATAA AACCTCAAAG CAGAGTGGTG AATGTGTCTA GCACTGAAAG TGTCAGAACC
CTTAACGAGT GCAGCCCTGA ATTGCAGCAG AAGTTCTAGA GTGAGACCAT CTCACAGGAG
GAGCTGGTGG GGCTCATGAA CAAATTTGTG GGAGACACAC ANAACAGGGT GCACACGAAA
GAGGGGAGGA GTGATTCCAC CTACCGAGTG ACAAAAATGG GGGCTCTGTG TTGTCCCCGA
TCTTTGCCCC GAAACTGAGA GAGCACAGAG CAGGGGACAA GATCCCCCTG AAAGACTGCT
GCCCCCGGGG GGGGGGAAAT GAAATGGGGG GACCCCAACC CCCCCTAACC CAAAGTAGGA
GCCAAAACCC CCCGGAATTT GCCCCTTTGC CCCCCAAAAC AAAGGGGCCC CTGGGCCGTT
TGTTTCTTTC AAAAAAATTT TAAAAAGGGG GGTTCCCCCC GAAAAAAAAC CCCCGGGGGA
AAGGAAAAAT TTTGCCCGGG TTTTCCCCCA GGGATATTTT TCCTTTCCAA AAAATTCCTT
GGCGGCGGAC CCCAAACCCA AACCCTAAAA AAAACCCCTT TGTTAAAAAA AAAAAAAAAT
CTCCTTTTAT ATTCCCCCCG GGAAGAAGAG GCCATATCTT TTAAGAGATT TGTGTATTCC
TCTTTCATCC CCGGCGGGGA AGAGGGAGGG TTGCTCCCCT GTGTTTAAAA GAGAAAGAAA
AAAGGGTGTT TTTTATATTT TCTAAAAAAA AAAAAAAAAC CTTTTTCTCT TTTTCGTGTT
GCCCCCCACA ATAATATAA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR1carbonyl reductase 13263e-89O
Contig/Assembly ProteinCBR3carbonyl reductase 32902e-78O
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 158.21e-08
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 158.21e-08
Contig/Assembly ProteinRDH14retinol dehydrogenase 14 (all-trans/9-cis/11-cis)58.21e-08O
Contig/Assembly ProteinRDH11retinol dehydrogenase 11 (all-trans/9-cis/11-cis)56.64e-08O
Contig/Assembly ProteinRDH12retinol dehydrogenase 12 (all-trans/9-cis/11-cis)56.25e-08O
Contig/Assembly ProteinLOC654042similar to dehydrogenase/reductase (SDR family) member 4 like 254.32e-07O
Contig/Assembly ProteinDHRS4L2dehydrogenase/reductase (SDR family) member 4 like 252.47e-07O
Contig/Assembly ProteinLOC654042similar to dehydrogenase/reductase (SDR family) member 4 like 252.47e-07O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCbr1carbonyl reductase 12989e-81O
Contig/Assembly ProteinLOC435489similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2963e-80O
Contig/Assembly ProteinLOC435489similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2963e-80O
Contig/Assembly ProteinCbr3carbonyl reductase 32941e-79O
Contig/Assembly ProteinLOC386400similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2832e-76O
Contig/Assembly ProteinRdh13retinol dehydrogenase 13 (all-trans and 9-cis)65.51e-10O
Contig/Assembly ProteinRdh11retinol dehydrogenase 1161.61e-09O
Contig/Assembly ProteinRdh14retinol dehydrogenase 14 (all-trans and 9-cis)60.53e-09O
Contig/Assembly ProteinRdh12retinol dehydrogenase 1257.82e-08O
Contig/Assembly ProteinDhrsxdehydrogenase/reductase (SDR family) X chromosome56.26e-08O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC610164similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])3202e-87O
Contig/Assembly ProteinLOC487748similar to carbonyl reductase 33033e-82
Contig/Assembly ProteinLOC480785similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2894e-78O
Contig/Assembly ProteinLOC478411similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2832e-76O
Contig/Assembly ProteinLOC475790similar to Retinol dehydrogenase 1271.22e-12
Contig/Assembly ProteinLOC491173similar to retinol dehydrogenase 11 (predicted)60.82e-09O
Contig/Assembly ProteinLOC611373similar to Retinol dehydrogenase 1359.75e-09O
Contig/Assembly ProteinLOC490744similar to retinol dehydrogenase 12 (all-trans and 9-cis)59.37e-09O
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)573e-08O
Contig/Assembly ProteinLOC480366similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)573e-08


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR1carbonyl reductase 13147e-86O
Contig/Assembly ProteinLOC617400similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])3149e-86O
Contig/Assembly ProteinMGC12713320-beta-hydroxysteroid dehydrogenase-like3054e-83O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 33032e-82O
Contig/Assembly ProteinLOC613272similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])1571e-38O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 31272e-29O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 31272e-29O
Contig/Assembly ProteinLOC507942similar to retinol dehydrogenase 11 (predicted)64.32e-10
Contig/Assembly ProteinMGC139505similar to retinol dehydrogenase 11 (predicted)61.21e-09O
Contig/Assembly ProteinDSSDR2double substrate-specificity short chain dehydrogenase/reductase 261.21e-09O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR120-beta-hydroxysteroid dehydrogenase388e-109O


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
TES010023D06TES01_0023_D06.bCJ031547