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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-056828

Length: 1,312

Sequence [FASTA format sequence]
TGGCTCTGGA CTCGCCCGGA GGCTCGCGGC GAGAGTGCTG CTAGTGGGCA CCCAACCCCT
TCTGCGTCGC ATCGGCTGCC AGCATTGCGC AGACCTTCGG CCTCGCGTTT GGGAGAAACC
AGACCCATCC GCTGTCCGTG CAGAGGCACC GCTGCCCCGC TCCCGACCAT GTCGTCCAAC
ATTCGCGTGG CGGTGGTGAC CGGCGGCAAC AAGGGCATCG GCCTCGCCAT CGTGCGTGAT
CTGTGCCAGC AGTTCTCGGG GGATGTGATG CTTACGGCGC GGGACGTGGC GAGAGGCCAG
GCGGCGGTGC AGCAGCTGCA GGCTGAGGGT CTGAGCCCGC GCTTCCACCA GCTGGATATC
GACGACCTTC GGAGCATCCA GGCCCTGCGC GACTTCCTGC TCAAGGAGTA TGGGGGACTC
AACGTGCTGG TCAATAACGC GGGCATCGCT TTCAAAACTG TTGATCCCAC ACCGTTTCAT
ATTCAAGCTG AAGTAACTAT GAAAACAAAC TTCTTGGGAA CCCGAAATGT ATGCACAGAG
CTCCTGCCTC TGATAAAACC CCAAGGCAGA GTGGTGAATG TGTCTAGCAC TGAGAGTGTC
AGAGCTCTTA ACAACTGCAG TCCTGAACTG CAACAGAAAT TTCAGAGTGA GACCCTCACA
CATGAAGAGC TGGTGGGGCT CATGAACAAG TTTGTGGAAG ACCCCAAGAA CGGAGTCCCT
TAAAAGGAAG GCTGGGCCAG TACCGCGTAC GGAGTGACAA AAATCGGGGT CACTGTACTC
TCCCGGAATC TTGGCCAGGA AACTGAATTG ATCATATACC AGGGGAAAAA ATTCCTCCTG
AATAGCTGCT GCTCAAAGGT GGGGGAAAAA TTAAATGGGT TGGACCCAAA GCCCCCTAAA
ACCCCGAAGA AAGGGGCGAA AACCCCCGGG TACCTGGCCC TTTTCCCCCC AAAAGCTAAG
GGGCCCTCCG GCTCTTTTGT TTTTGAAAAA AAAATTTTTA AAAGGGGGGT TCCCCCTTTA
ACACTCCCCC GGGGCCAAGG CAAAATTTGG GTCCCGATTT CCCCAAAGGG ATATTTTCCT
TATCAAAAAT TTCCCTGGGC AAAAAAAAAA AAAAAAAGGC CCTTTTTGTC TCATTTTCGG
GGCCCGGCCC CTAAATATAT CTATAAAAAA AATCCCCATC CCCCCCCCTG ACCGGGAATA
AAAAAGAAAG CAAATGGTTT TAATAATATT TTTCCCCCCT TATGGGGTCA AAAATAAAAA
TACTCCCAAT TTCAAAAGAA GACTTTTTCT CATTCTCATT GGGTGTGTGA CACACCAAAT
ATTTCTACTG TGGTGTCCAG GATAGCACC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR1carbonyl reductase 1373e-103O
Contig/Assembly ProteinCBR3carbonyl reductase 33226e-88O
Contig/Assembly ProteinRDH11retinol dehydrogenase 11 (all-trans/9-cis/11-cis)62.86e-10O
Contig/Assembly ProteinRDH12retinol dehydrogenase 12 (all-trans/9-cis/11-cis)62.86e-10O
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 158.22e-08
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 158.22e-08
Contig/Assembly ProteinDHRS10dehydrogenase/reductase (SDR family) member 1054.32e-07O
Contig/Assembly ProteinPECRperoxisomal trans-2-enoyl-CoA reductase521e-06O
Contig/Assembly ProteinRDH14retinol dehydrogenase 14 (all-trans/9-cis/11-cis)51.61e-06O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC435489similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)3381e-92O
Contig/Assembly ProteinLOC435489similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)3381e-92O
Contig/Assembly ProteinCbr1carbonyl reductase 13372e-92O
Contig/Assembly ProteinLOC386400similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)3272e-89O
Contig/Assembly ProteinCbr3carbonyl reductase 33186e-87O
Contig/Assembly ProteinRdh11retinol dehydrogenase 1166.65e-11O
Contig/Assembly ProteinRdh12retinol dehydrogenase 1262.88e-10O
Contig/Assembly ProteinRdh13retinol dehydrogenase 13 (all-trans and 9-cis)59.39e-09O
Contig/Assembly ProteinDhrsxdehydrogenase/reductase (SDR family) X chromosome55.12e-07O
Contig/Assembly ProteinRdh14retinol dehydrogenase 14 (all-trans and 9-cis)53.94e-07O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC610164similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])3502e-96O
Contig/Assembly ProteinLOC487748similar to carbonyl reductase 33332e-91
Contig/Assembly ProteinLOC480785similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])3186e-87O
Contig/Assembly ProteinLOC478411similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])3111e-84O
Contig/Assembly ProteinLOC475790similar to Retinol dehydrogenase 1269.38e-12
Contig/Assembly ProteinLOC480366similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12)64.72e-10
Contig/Assembly ProteinLOC490744similar to retinol dehydrogenase 12 (all-trans and 9-cis)63.54e-10O
Contig/Assembly ProteinLOC476420similar to dehydrogenase/reductase (SDR family) member 1058.51e-08O
Contig/Assembly ProteinLOC491173similar to retinol dehydrogenase 11 (predicted)57.82e-08O
Contig/Assembly ProteinLOC611373similar to Retinol dehydrogenase 1355.51e-07O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR1carbonyl reductase 13485e-96O
Contig/Assembly ProteinLOC617400similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])3455e-95O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 33323e-91O
Contig/Assembly ProteinMGC12713320-beta-hydroxysteroid dehydrogenase-like3286e-90O
Contig/Assembly ProteinLOC613272similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])1895e-48O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 31572e-38O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 31572e-38O
Contig/Assembly ProteinDSSDR2double substrate-specificity short chain dehydrogenase/reductase 265.11e-10O
Contig/Assembly ProteinLOC507942similar to retinol dehydrogenase 11 (predicted)64.72e-10O
Contig/Assembly ProteinMGC139505similar to retinol dehydrogenase 11 (predicted)60.82e-09O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR120-beta-hydroxysteroid dehydrogenase371e-104O


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
TES010026D07TES01_0026_D07.bCJ031728