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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-057701

Length: 1,192

Sequence [FASTA format sequence]
GTGGCTATGG GTTACAAATT GCTCCTTGCC TGGCTGCACC TTCTGCCCTA GACTCAACCA
CCCCTCCACT CTCCACGCCA GAGCACATAC ACCACACCAG CCACGTCTTC CAACACTCGA
GTGGCTCTGG TGACTGGGGC AAACAAGGGT ATTGGCTTCT CCATCGTGCG GGACCTGTGC
CGGCAGTTCG CTGGGGACGT GGTGCTCACA GCGAGGGACG TGGCACGAGG CCAGGCAGCC
GTGAAGCAAC TGCAAGCCGA GGGCCTGAGC CCGCGCTTCC ACCAGCTGGA CATCATAGAC
CTGCAGAGCA TCCGTGCCCT GTGTGACTTC CTGCGGAAGG AGTATGGTGG GCTGGATGTG
CTGGTCAACA ACGCGGCCAT CGCCTTCCAG TTGGACAATC CCACACCGTT TCATATTCAG
GCAGAACTGA CTATGAAAAC AAACTTCATG GGAACCCGAA ATGTGTGCAC AGAGCTTCTG
CCTCTAATAA AACCTCAAGG CATAGTGGTG AGTGTGTCTA GCACTGAAGG TGTCAGAGCC
CTTAACGAGT GCAGCCCTGA ATTGCAGCAG AAGTTCAAGA GTGAGACCAT CCCATAGGAG
GAGCTGGTGG GGCTCATGAA CAAGTTTGTG GAAGACACTA ATAACGGGGT GCACAGGAAT
GAAGGATGGA GTGATTCGAC CCACGGAGTG ACCAAAATTG GGGTCTCTGT GTTGCCCCGG
TATCTATGCC TGGAAACTTG AAATAACTCA TAGCCTGGTG ACTATAATCT CCCTGAATGC
CTGCTGCCCA ATGGTGGTTG ATAACTGAAC TTGTGGGGGA CCTAATGCCT CACATATCCC
TAAGGTATGA ATCATAAACC CCCCGGGTAC TCCGGCCCTT TTTGTCCTCC GAACCTAATG
GGTCCTCCAG GTCCGTTTTT TTCCGATCAA AAAAACTTTA TAAATGGGGT GTTTCCCCTC
TAAAATTACC CCTTGGTTCA ATGATATATT TTGGTCCTGA TTTTCCCCCA AGGGTTTATT
TCCCCTTCTC CAAATTATCC CGGTTCCTAA TATCTATAAT CTTTAACCTC AAAATTCCCC
GCCTTTTATA AATAATCTAA TAACTCTTCC CTTTAAATCC CCCCCGGGGA AAACGGCTCC
CTATCCTCGT AAGAGCTTTT GTAAATCTCC ACTTTACTCC CCTGTGGGGA ATTTGGGTTA
GTTTCTCCTA CAGGTTAATT AACTTCTAAA GTGTATACAA TTCTCCTTTT TTTTATAAAA
TCAAATATAT ATAGAGCTCC TTCTCTCTCA CATCCTTGCT CGCGCCCTTA TTATTCTATT
ATAAAAATCT CTCTCTCCTC CTCTGACTAA TACAGAAAAT GATAGACATT TGGTGTATCA
TATTTTCTGC ATATATACGT ATCTCTGATT ACCCTCTACT CATTCTTAAT ATGATCTCTA
TCCTTCTTCT TCTTGGTGTC CTCTCATACT TATTTCTA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR1carbonyl reductase 13222e-88O
Contig/Assembly ProteinCBR3carbonyl reductase 32894e-78O
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 157.42e-08
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 157.42e-08
Contig/Assembly ProteinRDH14retinol dehydrogenase 14 (all-trans/9-cis/11-cis)55.87e-08
Contig/Assembly ProteinLOC654042similar to dehydrogenase/reductase (SDR family) member 4 like 253.14e-07
Contig/Assembly ProteinRDH12retinol dehydrogenase 12 (all-trans/9-cis/11-cis)52.86e-07
Contig/Assembly ProteinRDH11retinol dehydrogenase 11 (all-trans/9-cis/11-cis)521e-06
Contig/Assembly ProteinDHRS4L2dehydrogenase/reductase (SDR family) member 4 like 251.22e-06
Contig/Assembly ProteinLOC654042similar to dehydrogenase/reductase (SDR family) member 4 like 251.22e-06


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCbr1carbonyl reductase 12963e-80O
Contig/Assembly ProteinCbr3carbonyl reductase 32963e-80O
Contig/Assembly ProteinLOC435489similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2895e-78O
Contig/Assembly ProteinLOC435489similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2895e-78O
Contig/Assembly ProteinLOC386400similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2786e-75O
Contig/Assembly ProteinRdh13retinol dehydrogenase 13 (all-trans and 9-cis)62.49e-10
Contig/Assembly ProteinRdh11retinol dehydrogenase 1158.22e-08
Contig/Assembly ProteinRdh14retinol dehydrogenase 14 (all-trans and 9-cis)574e-08
Contig/Assembly ProteinRdh12retinol dehydrogenase 1256.65e-08
Contig/Assembly ProteinDhrsxdehydrogenase/reductase (SDR family) X chromosome56.26e-08


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC610164similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])3249e-89O
Contig/Assembly ProteinLOC487748similar to carbonyl reductase 33002e-81
Contig/Assembly ProteinLOC480785similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2803e-75O
Contig/Assembly ProteinLOC478411similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2763e-74O
Contig/Assembly ProteinLOC475790similar to Retinol dehydrogenase 1267.82e-11
Contig/Assembly ProteinLOC491173similar to retinol dehydrogenase 11 (predicted)57.82e-08
Contig/Assembly ProteinLOC611373similar to Retinol dehydrogenase 1357.43e-08
Contig/Assembly ProteinLOC490744similar to retinol dehydrogenase 12 (all-trans and 9-cis)56.65e-08O
Contig/Assembly ProteinLOC490616similar to dehydrogenase/reductase (SDR family) member 2 isoform 255.51e-07
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)54.72e-07


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMGC12713320-beta-hydroxysteroid dehydrogenase-like3141e-85O
Contig/Assembly ProteinCBR1carbonyl reductase 13131e-86O
Contig/Assembly ProteinLOC617400similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])3069e-84O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 33041e-82O
Contig/Assembly ProteinLOC613272similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])1642e-40O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 31302e-30O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 31302e-30O
Contig/Assembly ProteinLOC507942similar to retinol dehydrogenase 11 (predicted)60.82e-09
Contig/Assembly ProteinDSSDR2double substrate-specificity short chain dehydrogenase/reductase 258.21e-08
Contig/Assembly ProteinMGC139505similar to retinol dehydrogenase 11 (predicted)57.82e-08


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR120-beta-hydroxysteroid dehydrogenase385e-110O


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
TES010053G06TES01_0053_G06.b