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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-058155

Length: 1,277

Sequence [FASTA format sequence]
TTTCGCGTTG GCTAGACCCT GAATCCAGCT CTGGTCTACC TGGCTTCTCT GTTACCAAAT
TGCTCCTTGC CTGGCTGCAC CTTCTGCCCT AGACTCACAC CACCCTCCAC TCTCCACGCC
AGAGCACATA CACCACACCA GCCATGTCTT CCAACACTCG AGTGGCTCTG GTGACTGGGG
CAAACAAGGG TATTGGCTTC GCCATCGTGC GGGACCTGTG CCGGCAGTTC GCTGGGAACG
TGGTGCTCAC AGCGAGGGAC GTGGCACGAG GCCAGGCAGC CGTGAAGCAA CTGCAAGCCG
AGGGCCTGAG CCCGCGCTTC CACCAGCTGG ACATCATAGA CCTGCAGAGC ATCCGTGCCC
TGTGTGACTT CCTGGGGAAG GAGTATGGTG GGCTGGATGT GCTGGTCAAC AACGCGGCCA
TCGCCTTCCA GTTGGACAAT CCCACACCGT TTCATATTCA GGCAGAACTG ACTATGAAAA
CAAACTTCAT GGGAACCCGA AATGTGTGCA CAGAGCTTCT GCCTCTAATA AAACCTCAAG
GCAGAGTGGT GAATGTGTCT AGCACTGAAG GTGTCAGAGC CCTTAACGAG TGCAGCCCTG
AATTGCAGCA GAAGTTCAAG AGTGAGACCT TCACAGATGA GGAACTGGTG GGGCTCATGA
ACAAGTTTGT GGAAGACACA AAAAACGGGG TGCACAAGAA GGGAGGAATG GATTGAATCC
AACCTACGGA GTGACAAAAA TTTGGGGTCT CTGTGTTGTC CAGAATCTTT GCCCAGGAAA
CTTAAAAAAG CAAAAAACCG GGGGACAAAA TCCCCCCTGA AAGGCTTGCC GCCCCAAGGG
GGGGTAAAAA CTGAAATGGG GGGAAACCAA AACCCCCCAA AACCCCCAAA GGTTGGAACC
AAAAACCCCC CGGGAATTGG CCCCTTTTTC CCCCCAAATA CAAAGGGGCC CCAGGGCCAT
TTTTTTTCAC AAAAAAATTT TTTAAAAGGG GGGGTTCCCC CCAAAAAAAT CCCCCGGAGA
AAAAGAAAAA ATTGGGGCCC GTATTTCCCC AAAGGGAATT TTTCCCTACT AAAAATTTTC
CGGGGAAAAA AAACCAAAAA TACACACAAA AAAAAACCCC TTTTTTAAAA AAACACAATT
TTCCTTTTTA AACCCCCCCG GGGAAAACGG CCTTTTTTCA GAAGAATTTT TTTGTTTTCC
CCTTCCTTCC GGCGGGAGAA AAGAGAGGGT CTCCCCTTGT GTAAAAAAGT GAGGAAGGAG
ATGTTCTTTT TTTTATTTCA AAATAAAAAA AAAAAAAAGC ATATTTTTAT TTATCGTTGG
CCCGCTTCAA ATATAAAATA AACACCCCCC CCCCCTCACA CACATATATA AGAATATGTT
CTTCTTN


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR1carbonyl reductase 13172e-86O
Contig/Assembly ProteinCBR3carbonyl reductase 32841e-76O
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 157.43e-08
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 157.43e-08
Contig/Assembly ProteinRDH14retinol dehydrogenase 14 (all-trans/9-cis/11-cis)56.64e-08
Contig/Assembly ProteinRDH12retinol dehydrogenase 12 (all-trans/9-cis/11-cis)55.88e-08O
Contig/Assembly ProteinRDH11retinol dehydrogenase 11 (all-trans/9-cis/11-cis)55.11e-07O
Contig/Assembly ProteinLOC654042similar to dehydrogenase/reductase (SDR family) member 4 like 255.11e-07O
Contig/Assembly ProteinDHRS4L2dehydrogenase/reductase (SDR family) member 4 like 253.15e-07O
Contig/Assembly ProteinLOC654042similar to dehydrogenase/reductase (SDR family) member 4 like 253.15e-07O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC435489similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2881e-77O
Contig/Assembly ProteinLOC435489similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2881e-77O
Contig/Assembly ProteinCbr3carbonyl reductase 32864e-77O
Contig/Assembly ProteinCbr1carbonyl reductase 12856e-77O
Contig/Assembly ProteinLOC386400similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2725e-73O
Contig/Assembly ProteinRdh13retinol dehydrogenase 13 (all-trans and 9-cis)65.12e-10O
Contig/Assembly ProteinRdh11retinol dehydrogenase 1161.22e-09O
Contig/Assembly ProteinRdh14retinol dehydrogenase 14 (all-trans and 9-cis)58.91e-08
Contig/Assembly ProteinRdh12retinol dehydrogenase 1257.43e-08O
Contig/Assembly ProteinDhrsxdehydrogenase/reductase (SDR family) X chromosome55.51e-07


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC610164similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])3081e-83O
Contig/Assembly ProteinLOC487748similar to carbonyl reductase 32919e-79
Contig/Assembly ProteinLOC480785similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2857e-77O
Contig/Assembly ProteinLOC478411similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2803e-75O
Contig/Assembly ProteinLOC475790similar to Retinol dehydrogenase 1272.87e-13
Contig/Assembly ProteinLOC611373similar to Retinol dehydrogenase 1359.38e-09O
Contig/Assembly ProteinLOC491173similar to retinol dehydrogenase 11 (predicted)59.38e-09O
Contig/Assembly ProteinLOC490744similar to retinol dehydrogenase 12 (all-trans and 9-cis)58.91e-08O
Contig/Assembly ProteinLOC490616similar to dehydrogenase/reductase (SDR family) member 2 isoform 256.65e-08
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)55.51e-07


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMGC12713320-beta-hydroxysteroid dehydrogenase-like3123e-85O
Contig/Assembly ProteinCBR1carbonyl reductase 13033e-82O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 32962e-80O
Contig/Assembly ProteinLOC617400similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2963e-80O
Contig/Assembly ProteinLOC613272similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])1588e-39O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 31259e-29O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 31259e-29O
Contig/Assembly ProteinLOC507942similar to retinol dehydrogenase 11 (predicted)65.97e-11
Contig/Assembly ProteinDSSDR2double substrate-specificity short chain dehydrogenase/reductase 260.82e-09O
Contig/Assembly ProteinMGC139505similar to retinol dehydrogenase 11 (predicted)59.75e-09O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR120-beta-hydroxysteroid dehydrogenase374e-105O


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
TES010069D06TES01_0069_D06.bCJ034455