[Help]

[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-058351

Length: 1,303

Sequence [FASTA format sequence]
TTTTCGCTGT GGCTATGGAC TGGCTTCTCT GTTACCAAAT TGCTCCTTGC CTGGCTGCAC
CTTCTGCCCT AGACTCACAC CACCCTCCAC TCTCCACGCC AGAGCACATA CACCACACCA
GCCATGTCTT CCAACACTCG AGTGGCTCTG GTGACTGGGG CAAACAAGGG TATTGGCTTC
GCCATCGTGC GGGACCTGTG CCGGCAGTTC GCTGGGGACG TGGTGCTCAC AGCGAGGGAC
GTGGCACGAG GCCAGGCAGC CGTGAAGCAA CTGCAAGCCG AGGGCCTGAG CCCGCGCTTC
CACCAGCTGG ACATCATAGA CCTGCAGAGC ATCCGTGCCC TGTGTGACTT CCTGCGGAAG
GAGTATGGTG GGCTGGATGT GCTGGTCAAC AACGCGGCCA TCGCCTTCCA GTTGGACAAT
CCCACACCGT TTCATATTCA GGCAGAACTG ACTATGAAAA CAAACTTCAT GGGAACCCGA
AATGTGTGCA CAGAGCTTCT GCCTCTAATA AAACCTCAAG GCAGAGTGGT GAATGTGTCT
AGCACTGAAG GTGTCAGAGC CCTTAACGAG TGCAGCCCTG ATTTGCAGCA GAAGTTCAAG
AGTGAGACCT TCACAGAAGA AGAGCTGGTG GGGCTCATGA ACAAGTTTGT GGAAGACCCA
AAAACGGGGT GCACAGAAAG AAGGATGAAT TGATTCCACT ACGGAGTGAC CAAATTGGGG
GTCTCTGGGT TGCCCAGAAT TCATGCCAGG AAACTGAAAA ACCCAAAAAA CCGGGGAAAA
AAATCCCCCG GAAAGCCCCC CGCCCCAGGG GGGTGAAAAA TTAACATGGG GGGGAACCCA
AACCCCCCCA AAACCCCAAA GGTGGGAACC AAAACCCCCC CTGATCTTGG GCCCTTTTGC
CCCCAAAAAG AAAGGGCCCC CCTGGGCCAT TTGTTACCGA AAAAAAATTT TTAAAAAGGG
GGTTTCCCCC CGAAAAACTC CCCCCGGGAA AAAACAAATT TTGCCCCGGA TTTCCCCACA
GAGAATTTTC CCCTCTAAAA AATTTCCTGG GGGAAAAACC CTTAATCCCT ACCCTTAAAA
AACGCCTTTT TTTAAAAAAA CAAATTTTCC TTTTATAACC CCCCGGGGGA AAGGGGCTTT
TTTCTGGGAG GTTTTTTGTT TTCCCCTTTC CCCCGGGGAA AAAAAAGGGC TTTCCCCTCT
TGTATAAAAT GTGGCGGGAA AATAAAAAAC AAAAAAAAAA TCCCTTTTGT TTTTTATGTG
GCCCGCCGCC TTATTTTTTA AAAAAACACC CCTCCCCCCC ACAAAAAAAA AAATATAAGA
TTTGTTCTTT ATTTTC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR1carbonyl reductase 13202e-87O
Contig/Assembly ProteinCBR3carbonyl reductase 32855e-77O
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 158.22e-08
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 158.22e-08
Contig/Assembly ProteinRDH14retinol dehydrogenase 14 (all-trans/9-cis/11-cis)56.65e-08
Contig/Assembly ProteinRDH12retinol dehydrogenase 12 (all-trans/9-cis/11-cis)55.88e-08
Contig/Assembly ProteinRDH11retinol dehydrogenase 11 (all-trans/9-cis/11-cis)55.11e-07
Contig/Assembly ProteinLOC654042similar to dehydrogenase/reductase (SDR family) member 4 like 254.32e-07O
Contig/Assembly ProteinDHRS4L2dehydrogenase/reductase (SDR family) member 4 like 252.49e-07O
Contig/Assembly ProteinBDH13-hydroxybutyrate dehydrogenase, type 152.49e-07


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCbr3carbonyl reductase 32902e-78O
Contig/Assembly ProteinCbr1carbonyl reductase 12894e-78O
Contig/Assembly ProteinLOC435489similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2856e-77O
Contig/Assembly ProteinLOC435489similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2856e-77O
Contig/Assembly ProteinLOC386400similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2687e-72O
Contig/Assembly ProteinRdh13retinol dehydrogenase 13 (all-trans and 9-cis)63.55e-10
Contig/Assembly ProteinRdh11retinol dehydrogenase 1160.15e-09
Contig/Assembly ProteinRdh14retinol dehydrogenase 14 (all-trans and 9-cis)58.91e-08
Contig/Assembly ProteinRdh12retinol dehydrogenase 1257.43e-08
Contig/Assembly ProteinDhrsxdehydrogenase/reductase (SDR family) X chromosome56.66e-08


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC610164similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])3156e-86O
Contig/Assembly ProteinLOC487748similar to carbonyl reductase 32941e-79
Contig/Assembly ProteinLOC480785similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2818e-76O
Contig/Assembly ProteinLOC478411similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2794e-75O
Contig/Assembly ProteinLOC475790similar to Retinol dehydrogenase 1272.87e-13
Contig/Assembly ProteinLOC491173similar to retinol dehydrogenase 11 (predicted)59.38e-09
Contig/Assembly ProteinLOC490744similar to retinol dehydrogenase 12 (all-trans and 9-cis)58.91e-08O
Contig/Assembly ProteinLOC611373similar to Retinol dehydrogenase 1357.82e-08
Contig/Assembly ProteinLOC490616similar to dehydrogenase/reductase (SDR family) member 2 isoform 256.65e-08
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)55.51e-07


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMGC12713320-beta-hydroxysteroid dehydrogenase-like3102e-84O
Contig/Assembly ProteinCBR1carbonyl reductase 13055e-83O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 33011e-81O
Contig/Assembly ProteinLOC617400similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2971e-80O
Contig/Assembly ProteinLOC613272similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])1559e-38O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 31241e-28O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 31241e-28O
Contig/Assembly ProteinLOC507942similar to retinol dehydrogenase 11 (predicted)65.97e-11
Contig/Assembly ProteinDSSDR2double substrate-specificity short chain dehydrogenase/reductase 260.82e-09
Contig/Assembly ProteinMGC139505similar to retinol dehydrogenase 11 (predicted)59.75e-09


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR120-beta-hydroxysteroid dehydrogenase372e-104O


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
TES010074F03TES01_0074_F03.bCJ034769