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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-058416

Length: 1,121

Sequence [FASTA format sequence]
TTCCTACTGT GGCTACGGCT GATCCAGCTC TGGTCTACCT GGCTTCTCTG TTACAAATTG
CTCCTTGCCT GGCTGCACCT TCTGCCCTAG ACTCACACCA CCCTCCACTC TCCACGCCAG
AGCACATACA CCACACCAGC CATGTCCTCC AACACTCGAG TGGCTCTGGT GACTGGGGCA
AACAAGGGTA TTGGCTTCGC CATCGTGCGG GACCTGTGCC GGCAGTTCGC TGGGGACGTG
GTGCTCACAG CGAGGGACGT GGCACGAGGC CAGGCAGCCG TGAAGCAACT GCAAGCCGAG
GGCCTGAGCC CGCGCTTCCA CCAGCTGGAC ATCATAGACC TGCAGAGCAT CCGTGCCCTG
TGTGACTTCC TGCGGAAGGA GTATGGTGGG CTGGATGTGC TGGTCAACAA CGCGGCCATC
GCCTTCCAGT TGGACAATCC CACACCGTTT CATATTCAGG CAGAACTGAC TATGAAAACA
AACTTCATGG GAACCCGAAA TGTGTGCACA GAGCTTCTGC CCTCTATAAA ACCTCAAGGC
AAAGTGGTGA ATGTGTCTAG CACTGAAAGT GTCAGAGCCC TTACGAGTGC AGCCCTGAAT
TGCAGCAGAA GTTCAGGAGT GAGACCTTCA CAGAGGAAGA GCTGGTGGGG CTCATGAACA
AGTTTGTGAA AAACCCAAGA ACGGGGTGCA CAGGAAGGGA GGAAGGAATG ATTTCCACCT
ACGGAATGGA AAAAATTGGG GGCCCTGGGT TTGCCCGGAT CTTTTCCCGG AAACTTGAAA
AAACCAGGGA CCCCGGGAAA AAAACCCCCC CGAAATGCCC GCCGCCCCGG GGGGGGGAAA
AAAATAAACT GGGGGGGACC CAAAACCCCC CAAAACCCCC AAGGTTGGGA AACAAAAACC
CCCCGGTGTT TTTGGCCCCT TTTTCCCCCC AAAAGCAAAA GGGGGCCCCA GGGGCCCCTT
TTTTTTCCCC AAAAAAAAAT TTTAAAAAAG GGGGGGTTCC CCCCCAAAAA AACCCCCCGG
GGAAAAAGAA AAAAATTGGG CCCCAATTTT CCCCCACAAG GGGACTTTCC CCCCTCCACA
AAAAATTTCC GCGGGGGGGA AAAACCAAAA ACTCCACCCC AAAAAAACAC CCTCTTTTTA
AAGAAAAAAA AAAATATCTC TTCTTTATAA TCCCCCCCGG GAAAGAAGCG CTTTTTCTTT
TTGGGAGAGG TTGTGTTTTT TCCCCCCCCC CCCCTCCCGG GGAAGAAAAG AAAGCTTCCC
TCCTCCGCGT GTAAAAACAA TAAAGGGGAA GAATATATTC TTTTCTTTAT AAAAAAAAAA
AAAA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR1carbonyl reductase 12427e-81O
Contig/Assembly ProteinCBR3carbonyl reductase 32287e-60O
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 158.21e-08
Contig/Assembly ProteinLOC388963similar to short-chain dehydrogenase/reductase 158.21e-08
Contig/Assembly ProteinRDH14retinol dehydrogenase 14 (all-trans/9-cis/11-cis)57.82e-08
Contig/Assembly ProteinLOC654042similar to dehydrogenase/reductase (SDR family) member 4 like 255.86e-08O
Contig/Assembly ProteinRDH12retinol dehydrogenase 12 (all-trans/9-cis/11-cis)55.58e-08O
Contig/Assembly ProteinRDH11retinol dehydrogenase 11 (all-trans/9-cis/11-cis)54.71e-07O
Contig/Assembly ProteinDHRS4L2dehydrogenase/reductase (SDR family) member 4 like 252.47e-07O
Contig/Assembly ProteinLOC654042similar to dehydrogenase/reductase (SDR family) member 4 like 252.47e-07O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCbr3carbonyl reductase 32319e-71O
Contig/Assembly ProteinCbr1carbonyl reductase 12211e-72O
Contig/Assembly ProteinLOC435489similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2162e-72O
Contig/Assembly ProteinLOC435489similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2162e-72O
Contig/Assembly ProteinLOC386400similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1)2027e-68O
Contig/Assembly ProteinRdh13retinol dehydrogenase 13 (all-trans and 9-cis)63.54e-10O
Contig/Assembly ProteinRdh11retinol dehydrogenase 1159.75e-09O
Contig/Assembly ProteinRdh14retinol dehydrogenase 14 (all-trans and 9-cis)58.99e-09
Contig/Assembly ProteinRdh12retinol dehydrogenase 1256.65e-08O
Contig/Assembly ProteinDhrsxdehydrogenase/reductase (SDR family) X chromosome56.26e-08


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC610164similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2413e-79O
Contig/Assembly ProteinLOC487748similar to carbonyl reductase 32363e-72
Contig/Assembly ProteinLOC480785similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2149e-68O
Contig/Assembly ProteinLOC478411similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2061e-65O
Contig/Assembly ProteinLOC475790similar to Retinol dehydrogenase 1272.48e-13
Contig/Assembly ProteinLOC491173similar to retinol dehydrogenase 11 (predicted)58.51e-08O
Contig/Assembly ProteinLOC490744similar to retinol dehydrogenase 12 (all-trans and 9-cis)58.21e-08O
Contig/Assembly ProteinLOC611373similar to Retinol dehydrogenase 1357.82e-08O
Contig/Assembly ProteinLOC490616similar to dehydrogenase/reductase (SDR family) member 2 isoform 256.64e-08
Contig/Assembly ProteinLOC482983similar to retinol dehydrogenase 14 (all-trans and 9-cis)55.87e-08


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMGC12713320-beta-hydroxysteroid dehydrogenase-like2366e-77O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 32362e-62O
Contig/Assembly ProteinCBR1carbonyl reductase 12306e-76O
Contig/Assembly ProteinLOC617400similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])2232e-58O
Contig/Assembly ProteinLOC613272similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+])76.66e-31O
Contig/Assembly ProteinLOC507942similar to retinol dehydrogenase 11 (predicted)65.57e-11
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 363.24e-10O
Contig/Assembly ProteinLOC516036similar to carbonyl reductase 363.24e-10O
Contig/Assembly ProteinDSSDR2double substrate-specificity short chain dehydrogenase/reductase 260.13e-09O
Contig/Assembly ProteinMGC139505similar to retinol dehydrogenase 11 (predicted)58.97e-09O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCBR120-beta-hydroxysteroid dehydrogenase2833e-97O


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
TES010076H03TES01_0076_H03.bCJ034927