[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-059192
Length:
927
Sequence:
[FASTA format sequence]
NTTTTTACTA CGTTTGCTAG GGCCAGCTGT GCCGAGCACC AGGATCGAGA AGAGGCAGAG
GAAAGGGAAG CAGAGAGAAG CAGCCAAGAG TTGGAGCCAG ACCAGGAGGA GCCCGAGTGG
AGTTGAAGTT CCTTTTGCAG AGGCGGCAGC AAGTAAAGCA GTTGAAACGA TGCTGGCTGT
CTTGGGACTG CTCACCTCCT TCCTTTTTTT TTCCTGTATG TGACAGCTCC ATCCATCAGG
AGCCCGAGTA TACATTGCCT GCCGAGATGT ACTGAAGGGG GAGTCTGCTG CCAGTGAAAT
CCGAGCTGAT ACAAAGAACT CCCAGGTGCT GGTGCGGAAA CTGGACCTCT CTGATACCAA
ATCCATCCGA GCCTTTGCTG AGGGCTTTCT GACAGAGGAA AAGCAGCTCC ATATTCTGAT
CAACAATGCT GGAGTGATGT TGTGTCCATA TTCCAAGACA GCGGATGGCT TTGAGACCCA
CCTGGGAGTC AACCACCTGG GCACGGGGGT CACCACGTAC GCAGTGCACC CAGGCATCGT
CCAGTCTGAG CTGGTCCGGC ATTCCTTCCT GCTGTGCCTG CTCTGGCGGC TCTTCTCCCG
CTTCCTCAAA ACAGCGCGGG AGGGGGCCCA GACCAGCCTG CACTGCGCCC TGGCCGAGGG
CCTGGAGCCC CTGAGCGGCA AGTACTTCAG TGACTGCAAG AGGGCCTGGG TGTCGCCAAG
GGCCCGGAAT AACAAAACGG CCGAGCGCTT GTGGAACGTC AGCTGCGAGC TCCTGGGAAT
CCCAGTGGAG TAGAGCTGCT GGAAGAATGC GCGCTGTATC AAGCCTGGTC CCAGCCATAA
CGCAGACGGG GGGATGGCCC ACCCCGAANG ACTGACTGGC TGGCTGCTGT CCCAACACTT
CCCNTGCTTT GATCTCCTGA TCCNTGAAAA ACTCCCCACA CCTAACCTCT TACAGGCTGA
TTCTCGGCAT AGAAGGTCAT ACCTGGAGAC ATCCTCTTTG AGACTGCAGA GTCGCCACCT
TCTCGGGCAG AGGACTGGGC AATGCCAGCT GGGCACAGGA TGGCAAAGAA CCTGGGAAAT
GAGTCATTTT CTACCAATAC AAAACCCCGC CGCACCCTCG GAGGTGCGTG TAACAATTTT
CGGGATAAAT CAAACCCGGA CAATTCCTTC CCTTTGAAAA TAACTGCCCC GGGAAAAGGG
AA
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | RDH12 | retinol dehydrogenase 12 (all-trans/9-cis/11-cis) | 204 | 6e-53 | O |
|
| RDH11 | retinol dehydrogenase 11 (all-trans/9-cis/11-cis) | 149 | 3e-36 | O |
|
| RDH14 | retinol dehydrogenase 14 (all-trans/9-cis/11-cis) | 92.4 | 5e-19 | O |
|
| MGC23280 | hypothetical protein MGC23280 | 88.2 | 9e-18 | |
|
| RDH13 | retinol dehydrogenase 13 (all-trans/9-cis) | 84.7 | 1e-16 | O |
|
| DHRSX | dehydrogenase/reductase (SDR family) X-linked | 76.3 | 3e-14 | O |
|
| WWOX | WW domain containing oxidoreductase | 69.3 | 4e-12 | |
|
| LOC388963 | similar to short-chain dehydrogenase/reductase 1 | 63.2 | 3e-10 | |
|
| LOC388963 | similar to short-chain dehydrogenase/reductase 1 | 63.2 | 3e-10 | |
|
| FLJ13639 | hypothetical protein FLJ13639 | 53.5 | 2e-07 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| Rdh12 | retinol dehydrogenase 12 | 184 | 9e-47 | O |
|
| Rdh11 | retinol dehydrogenase 11 | 145 | 4e-35 | O |
|
| Rdh14 | retinol dehydrogenase 14 (all-trans and 9-cis) | 94 | 2e-19 | O |
|
| Rdh13 | retinol dehydrogenase 13 (all-trans and 9-cis) | 92 | 8e-19 | O |
|
| 2610209N15Rik | RIKEN cDNA 2610209N15 gene | 79 | 7e-15 | O |
|
| Dhrsx | dehydrogenase/reductase (SDR family) X chromosome | 78.2 | 1e-14 | O |
|
| Wwox | WW domain-containing oxidoreductase | 71.2 | 1e-12 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| LOC490744 | similar to retinol dehydrogenase 12 (all-trans and 9-cis) | 187 | 2e-47 | |
|
| LOC480366 | similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12) | 147 | 1e-35 | |
|
| LOC611373 | similar to Retinol dehydrogenase 13 | 98.6 | 8e-21 | O |
|
| LOC482983 | similar to retinol dehydrogenase 14 (all-trans and 9-cis) | 94 | 2e-19 | O |
|
| LOC482983 | similar to retinol dehydrogenase 14 (all-trans and 9-cis) | 91.7 | 9e-19 | O |
|
| LOC491173 | similar to retinol dehydrogenase 11 (predicted) | 90.5 | 2e-18 | |
|
| LOC475790 | similar to Retinol dehydrogenase 12 | 69.7 | 4e-12 | |
|
| LOC610120 | similar to WW domain-containing oxidoreductase isoform 1 | 69.7 | 4e-12 | |
|
| LOC609792 | similar to dehydrogenase/reductase (SDR family) X-linked | 67.8 | 1e-11 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
| DSSDR2 | double substrate-specificity short chain dehydrogenase/reductase 2 | 186 | 2e-47 | |
|
| LOC505995 | similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12) | 159 | 4e-39 | O |
|
| LOC505995 | similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12) | 144 | 7e-35 | O |
|
| LOC507931 | similar to Retinol dehydrogenase 13 | 95.5 | 5e-20 | O |
|
| MGC139505 | similar to retinol dehydrogenase 11 (predicted) | 91.7 | 7e-19 | |
|
| MGC139076 | similar to retinol dehydrogenase 14 (all-trans and 9-cis) | 87 | 2e-17 | |
|
| LOC507942 | similar to retinol dehydrogenase 11 (predicted) | 72.8 | 4e-13 | |
|
| MGC140618 | similar to retinol dehydrogenase 13 (all-trans and 9-cis) | 70.1 | 2e-12 | O |
|
| LOC507276 | similar to short chain dehydrogenase/reductase | 66.6 | 3e-11 | O |
|
| LOC513482 | similar to dehydrogenase/reductase (SDR family) X-linked | 64.3 | 1e-10 | O |
| Locus | Definition | Score | E value | FL |
|---|
|
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