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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-059361

Length: 1,063

Sequence:  [FASTA format sequence]
ACTCATAATT CAATATGTTT TAATCTAACG AATGGACAAG GAACACGTCC TCTCCAGTTT
CTCCAGCTAT GTTGCATCTG TGATTTCTCC AAACCCTTTC ATGGATGGCG TGCTCATGAC
TGTTGATGCT TGGTGGTGCT GCATCCCTCC ACTTGGACTT TGGCCAGGAG ACACCCCACA
CGCATTATCT TGCACCTGAT TGAAATTCGT AGTGTCATTT CTTCTATGGG ACCGAGCGGG
TGAGGTTATT GGAGAGGCAA TACTATAACG GAGAGGAGTT CCTGCGCTTC TACAGCGACG
TGGGCTAGTA CCGGGCGGTG ACCGAGCTGG GGCGGCCAGA CGCCAATGAC TGGAACAGCC
TGAAGGACCT CCTGGAGCAG AGGCGGGCGG AGGTGGACAC GTACTGCAGA CACAACTTCC
GGATCTTGGA TACATTCCTG GTGCCGCGGC GAGCTGAGCC CACAGTGACG GTGTATCCTG
CAAAGACCCA GCCCTTGCAG CTCCACAACC TCCTGGTCTG CTCTGTGACC TGGTTCTACC
CAGGCCACGT GGAGGTCATG TGGCTCCAGA ATGGCCACCA AGAAGCGGCT AGTGTGGTCT
CCACAGGCCT GATCCCTAAT GGATACTGGA CCTTCCAAAC CTTGGTGATG CTTGAAACAG
TTCCCTCGTA TTGGAGAGGT CTTCTCCTGC CTATTGTAAC ACCCCACCTG AACTACCCCT
TCACATTTGA ATGTAAGGCA CCGCCTGAAT CTTCCCCAGG CTAAAATTAT GATTGGGGAT
CTGGTGGCTT CCTCCTGAGT CTGCCTCTTT TGTGTTGTCG GGCTGTTCTT CTTCCTCCAT
AAACTAAAAT GACGCCCCCT GTCCTTTTAC CCTAAAGGAC TTCCTTATCT AAAATTTATT
TGGGTTAACC TTCCAAGCAA ACTTCCTCTT TTCCCATTCT CCTTCCATTC TTTTAAAATG
ACCCTGTCAA ATTTCTTTTA ATCCCTCCCC CGTATAATTT TTTTCACCAA ATTTCCCTTT
GCTTACAGGT TCAGGGATCC TTTAAAAAAA ATGCTTATTT TAAGGGATTT CCACAACTCC
CCCTCTTTTA ATTTTTGAAA TTCTCTGACC TTTTTTTGTC AGTCCCCCAT AACACTATTC
TTTACCCTCT CTATTTACCC TATTGTGCCA ATGGTTATCA TTATATTAAT TACTCCTCTC
TTTGATTTCT TTATACTTCC TCGACCTATA AATTCTACAT TTTGAGAATT TATCCCACCA
CAATCTTGCC GAGCCTCCAT ATTATAATTT CTAACTTTAA TATCATTCTC TACTTTTCAC
TATACTAGTG TCCACTATTG CATCTTACTA TATCTAATTA AATAAATTTC TTCCATCTCC
TCTCTATCTT TA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		HLA-DRB1	major histocompatibility complex, class II, DR beta 1	241	8e-64	O
		HLA-DRB3	major histocompatibility complex, class II, DR beta 3	232	4e-61	O
		HLA-DRB5	major histocompatibility complex, class II, DR beta 5	231	1e-60	O
		LOC649143	similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)	229	2e-60	O
		LOC649143	similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)	229	2e-60
		HLA-DRB4	major histocompatibility complex, class II, DR beta 4	225	6e-59	O
		LOC649143	similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)	224	7e-59	O
		HLA-DQB1	major histocompatibility complex, class II, DQ beta 1	186	2e-47	O
		HLA-DPB1	major histocompatibility complex, class II, DP beta 1	183	2e-46	O
		HLA-DQB2	major histocompatibility complex, class II, DQ beta 2	173	2e-43	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		H2-Eb1	histocompatibility 2, class II antigen E beta	236	2e-62	O
		A130038H09Rik	RIKEN cDNA A130038H09 gene	183	3e-46	O
		H2-Ab1	histocompatibility 2, class II antigen A, beta 1	173	3e-43	O
		H2-Ob	histocompatibility 2, O region beta locus	169	1e-43	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		DLA-DRB1	MHC class II DLA DRB1 beta chain	227	2e-59	O
		DLA-DQB1	MHC class II DLA-DQ beta chain b1 domain	191	8e-49	O
		HLA-DOB	major histocompatibility complex, class II, DO beta	174	1e-43	O
		HLA-DOB	major histocompatibility complex, class II, DO beta	172	1e-44	O
		LOC607827	similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB)	52.8	6e-07	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		BoLA-DRB3	major histocompatibility complex, class II, DRB3	240	1e-63	O
		LOC538700	similar to major histocompatibility complex, class II, DR beta 5 precursor	204	1e-52	O
		LOC618722	similar to H-2 class II histocompatibility antigen, I-E beta chain precursor	188	5e-48	O
		BLA-DQB	MHC class II antigen	185	5e-47	O
		BOLA-DQB	major histocompatibility complex, class II, DQ beta	183	2e-46	O
		BOLA-DYB	major histocompatibility complex, class II, DY beta	179	4e-45	O
		BOLA-DOB	major histocompatibility complex, class II, DO beta	164	8e-41	O
		LOC617421	similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7)	110	2e-24	O
		BOLA-DMB	major histocompatibility complex, class II, DM beta-chain, expressed	52.4	6e-07	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL