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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-061771

Length: 918

Sequence [FASTA format sequence]
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXX
CCA CTGAGTGGGA GCTGTGTTGA CTACCATTAC
TTCTTCGTTT GTCCTCAATT ATGTCTGGGA TGGTGGCTCT GCGGCTCCCC AGAGGCCTTT
GGACAGCGGC CTTGACGGTG ATGCTGGTGG TGCTGGGTGC TCCAGTGGCT GAGGGCAGAG
ACTCTCCACA GGATTTCGTG TACCAGTTTA AGTTCGAGTG CTACTTCTTC AACGGAACGC
AGCGGGTGCG GGGCGTGGCC AGGTGGGTCT ACAACCAGGA GGAGCACGTG CGCTTCGACA
GCGACGTGGG GGAGTTCCGG GCGGTGACCC CGCTGGGGCG GCCGACCGCC GACTACTGGA
ACGGCCAGAA GGACGTCCTG GAGCAGAAGC GGGCCGAGGT GGACACGGTG TGCAAACACA
ACTACCAGAT AGAGGAAGGC ACGACCCTGC AGCGGCGAGG AACGGAGACT GGACCTACCA
GGTGCTCGTG ATGCTAGAGA TGAATCTCCA GCGAGGAGAT GTCTACACCT GCCGCGTGGA
GCACTCCAGC CTCCAGAACC CCATCTTGGT GGAGTGGCGG GCACAGTCTG AATCTGCCCA
GAGCAAGATG CTGAGCGGTG TCGGGGGCTT CGTGCTGGGG CTGATCTTCC TCGGGCTGGG
CCTTTTCATC CGTCACAGGA GTCAGATGGG GCTCGTGCGC TGAATCCTGA GATACTTTGG
GGGTGGTTTT TGCTCTTCTT AATGCCTGTC TGTTCTTGCC TGAATTCCCA TCCCCCCTGC
AGCTTGTCCT CTCTGANGTC GATCCTACAG TGACTCTGAT GCAGTCACCA GGCCGCTTCT
GTGATCCCCA CCTCAAGGCT CTGGCTGTGA AGCTTCTTCT GAACTTGACC CAGCGCCTCT
GCCTGAATGC AGCCAGCTGT GTCTACTCAA ACCACAAGGA ATTTT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DQB1major histocompatibility complex, class II, DQ beta 11794e-45O
Contig/Assembly ProteinHLA-DQB2major histocompatibility complex, class II, DQ beta 21671e-41O
Contig/Assembly ProteinHLA-DRB1major histocompatibility complex, class II, DR beta 11601e-39O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)1592e-39O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)1592e-39O
Contig/Assembly ProteinHLA-DRB5major histocompatibility complex, class II, DR beta 51541e-37O
Contig/Assembly ProteinLOC654155similar to HLA class II histocompatibility antigen, DR-W53 beta chain precursor1493e-36O
Contig/Assembly ProteinHLA-DRB4major histocompatibility complex, class II, DR beta 41472e-35O
Contig/Assembly ProteinHLA-DRB3major histocompatibility complex, class II, DR beta 31425e-34O
Contig/Assembly ProteinHLA-DPB1major histocompatibility complex, class II, DP beta 11401e-33O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 11495e-36O
Contig/Assembly ProteinH2-Eb1histocompatibility 2, class II antigen E beta1333e-31O
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus1142e-25O
Contig/Assembly ProteinA130038H09RikRIKEN cDNA A130038H09 gene1141e-25O
Contig/Assembly ProteinH2-DMb2histocompatibility 2, class II, locus Mb2529e-07
Contig/Assembly ProteinH2-DMb1histocompatibility 2, class II, locus Mb1529e-07


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDLA-DQB1MHC class II DLA-DQ beta chain b1 domain1863e-47O
Contig/Assembly ProteinDLA-DRB1MHC class II DLA DRB1 beta chain1502e-36O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta1224e-28O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta1224e-28O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBLA-DQBMHC class II antigen1841e-46O
Contig/Assembly ProteinBOLA-DQBmajor histocompatibility complex, class II, DQ beta1822e-46O
Contig/Assembly ProteinBoLA-DRB3major histocompatibility complex, class II, DRB31463e-35O
Contig/Assembly ProteinBOLA-DYBmajor histocompatibility complex, class II, DY beta1301e-30O
Contig/Assembly ProteinLOC538700similar to major histocompatibility complex, class II, DR beta 5 precursor1223e-28O
Contig/Assembly ProteinBOLA-DOBmajor histocompatibility complex, class II, DO beta1162e-26O
Contig/Assembly ProteinLOC618722similar to H-2 class II histocompatibility antigen, I-E beta chain precursor90.12e-18O
Contig/Assembly ProteinLOC617421similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7)78.66e-15


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
THY010079C01THY01_0079_C01.bBP161890