[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-061771
Length:
918
Sequence:
[FASTA format sequence]
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXCCA CTGAGTGGGA GCTGTGTTGA CTACCATTAC
TTCTTCGTTT GTCCTCAATT ATGTCTGGGA TGGTGGCTCT GCGGCTCCCC AGAGGCCTTT
GGACAGCGGC CTTGACGGTG ATGCTGGTGG TGCTGGGTGC TCCAGTGGCT GAGGGCAGAG
ACTCTCCACA GGATTTCGTG TACCAGTTTA AGTTCGAGTG CTACTTCTTC AACGGAACGC
AGCGGGTGCG GGGCGTGGCC AGGTGGGTCT ACAACCAGGA GGAGCACGTG CGCTTCGACA
GCGACGTGGG GGAGTTCCGG GCGGTGACCC CGCTGGGGCG GCCGACCGCC GACTACTGGA
ACGGCCAGAA GGACGTCCTG GAGCAGAAGC GGGCCGAGGT GGACACGGTG TGCAAACACA
ACTACCAGAT AGAGGAAGGC ACGACCCTGC AGCGGCGAGG AACGGAGACT GGACCTACCA
GGTGCTCGTG ATGCTAGAGA TGAATCTCCA GCGAGGAGAT GTCTACACCT GCCGCGTGGA
GCACTCCAGC CTCCAGAACC CCATCTTGGT GGAGTGGCGG GCACAGTCTG AATCTGCCCA
GAGCAAGATG CTGAGCGGTG TCGGGGGCTT CGTGCTGGGG CTGATCTTCC TCGGGCTGGG
CCTTTTCATC CGTCACAGGA GTCAGATGGG GCTCGTGCGC TGAATCCTGA GATACTTTGG
GGGTGGTTTT TGCTCTTCTT AATGCCTGTC TGTTCTTGCC TGAATTCCCA TCCCCCCTGC
AGCTTGTCCT CTCTGANGTC GATCCTACAG TGACTCTGAT GCAGTCACCA GGCCGCTTCT
GTGATCCCCA CCTCAAGGCT CTGGCTGTGA AGCTTCTTCT GAACTTGACC CAGCGCCTCT
GCCTGAATGC AGCCAGCTGT GTCTACTCAA ACCACAAGGA ATTTT
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 | 179 | 4e-45 | O | ||
HLA-DQB2 | major histocompatibility complex, class II, DQ beta 2 | 167 | 1e-41 | O | ||
HLA-DRB1 | major histocompatibility complex, class II, DR beta 1 | 160 | 1e-39 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 159 | 2e-39 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 159 | 2e-39 | O | ||
HLA-DRB5 | major histocompatibility complex, class II, DR beta 5 | 154 | 1e-37 | O | ||
LOC654155 | similar to HLA class II histocompatibility antigen, DR-W53 beta chain precursor | 149 | 3e-36 | O | ||
HLA-DRB4 | major histocompatibility complex, class II, DR beta 4 | 147 | 2e-35 | O | ||
HLA-DRB3 | major histocompatibility complex, class II, DR beta 3 | 142 | 5e-34 | O | ||
HLA-DPB1 | major histocompatibility complex, class II, DP beta 1 | 140 | 1e-33 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 | 149 | 5e-36 | O | ||
H2-Eb1 | histocompatibility 2, class II antigen E beta | 133 | 3e-31 | O | ||
H2-Ob | histocompatibility 2, O region beta locus | 114 | 2e-25 | O | ||
A130038H09Rik | RIKEN cDNA A130038H09 gene | 114 | 1e-25 | O | ||
H2-DMb2 | histocompatibility 2, class II, locus Mb2 | 52 | 9e-07 | |||
H2-DMb1 | histocompatibility 2, class II, locus Mb1 | 52 | 9e-07 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
DLA-DQB1 | MHC class II DLA-DQ beta chain b1 domain | 186 | 3e-47 | O | ||
DLA-DRB1 | MHC class II DLA DRB1 beta chain | 150 | 2e-36 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 122 | 4e-28 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 122 | 4e-28 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
BLA-DQB | MHC class II antigen | 184 | 1e-46 | O | ||
BOLA-DQB | major histocompatibility complex, class II, DQ beta | 182 | 2e-46 | O | ||
BoLA-DRB3 | major histocompatibility complex, class II, DRB3 | 146 | 3e-35 | O | ||
BOLA-DYB | major histocompatibility complex, class II, DY beta | 130 | 1e-30 | O | ||
LOC538700 | similar to major histocompatibility complex, class II, DR beta 5 precursor | 122 | 3e-28 | O | ||
BOLA-DOB | major histocompatibility complex, class II, DO beta | 116 | 2e-26 | O | ||
LOC618722 | similar to H-2 class II histocompatibility antigen, I-E beta chain precursor | 90.1 | 2e-18 | O | ||
LOC617421 | similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7) | 78.6 | 6e-15 |
Locus | Definition | Score | E value | FL |
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