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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-065059

Length: 924

Sequence [FASTA format sequence]
TTTGGTGXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XX
CAGTACCC GTTTGAGTGG GACTTGCCTG CTCCCCTACC
TCTCTGTCCT CTCCTGTTCT CCTCCATGTT GCATCTGTGT TTCTCCTTAG GCTTCTGGAT
GGCAGCTCCG ACCATGATGC TGGTGGTGCT GACCCCTCCC TTGGGTTTGG TCAGAGACAC
CCCACCGCAT TTCTTGTTTC TGGGGAAAGC TGATTGTCAT TTCTTCAACG GGACTGAACG
GGTGAGGTTT CTGGACATAT ACTTCTATAC TGGATATGAT GACTTGCTCT TCAACATCAA
CCTGGGCGAG TTCCGGGAAG TGACCGAATT TGGGCGGCCA GACTCCATTA CTGGAACTTC
CAAATAGACT TCTTGGAGCT CACGCCGGGG TACGTGGACT CAGTGTGCCG ACTCAACTAC
AAGATCTTAC AGACCTTCCT CCTGCCCTTG CTAGCTGAGC CAACAATGAC AGTGTACCCT
GCAAATACCC TGCCCCTGGC ACACCCCAAC CTCATGCTCT GCTCTGTGAC CGGCTGTCTA
CCCACCCCTT GTGGAGGTCA TGAGGCTCCC GAATGGCTGG GACCATGCGT ATGCCGTGGT
CTCCACCCGC CTGATCCCTA ATGAAGACTG GACCTTCCAG ACCCTGGTGA TTGCTTGACT
CTGTGCCTCA GACTGGACTA GATCTACCCT CGCCGAGTGC AGCACCCCAG CCTGACAAGC
CCCTTCTCAG TGGAGTGCCC GATACGGTCT GAATCTGTTC ACGGCAAGAT GATGATTGGT
ATCCGGCGCT TTGTCCTGGG AACTGCTCCT TGTTGCAGTG GGGTTGATCA ACCTCTTCTC
CAGTCGGAAA AGACGCCTCT GCCCTTCAAC CCACAAAGCC TTCTTAAGCT GTAATGGCAA
ATGGTGACTC TTCCAAGGAA ATATTCTTCT TGTCCAGCCT TCCTTTCCCT CTTTAGAAAG
GTTCCTGCTT TTTCTCTGCC TATCTCTCCC CAAGAAAACT TTTTCCCTAG AAACCTCCCT
TTTCCTTTTT GGTTTTGGGG AACTTTTAAA AAAAAAAGCC CCTTTGGATT GTTTTTCCCA
GCCCCCCCCC CCCCTCTTTA CCCCTGGAAT TTTCCCTGCC AATATTATCC CCCTTATCCC
CCATTTTTTT TTAATTTTTT TTTTTTTTTT TTTTTTTTTT TTTAAAAGGC TTGTCCCCCC
CCCCCCCTCC TTCCCTCCTC CTCCAAACCC CTTTTTTACA ACAATCCCCC CATCCACCCA
GAGGGGGATG AAAGAGATCC TACATG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DRB3major histocompatibility complex, class II, DR beta 31088e-24O
Contig/Assembly ProteinHLA-DRB5major histocompatibility complex, class II, DR beta 51071e-23O
Contig/Assembly ProteinHLA-DRB1major histocompatibility complex, class II, DR beta 11072e-23O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)1049e-23O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)1049e-23O
Contig/Assembly ProteinHLA-DRB4major histocompatibility complex, class II, DR beta 41032e-22O
Contig/Assembly ProteinLOC649143similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9)87.81e-17O
Contig/Assembly ProteinHLA-DQB2major histocompatibility complex, class II, DQ beta 286.73e-17O
Contig/Assembly ProteinLOC654155similar to HLA class II histocompatibility antigen, DR-W53 beta chain precursor77.47e-19O
Contig/Assembly ProteinHLA-DQB1major histocompatibility complex, class II, DQ beta 1772e-14O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Eb1histocompatibility 2, class II antigen E beta1127e-25O
Contig/Assembly ProteinA130038H09RikRIKEN cDNA A130038H09 gene92.84e-19O
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 175.57e-14O
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus673e-11O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinDLA-DRB1MHC class II DLA DRB1 beta chain1171e-26O
Contig/Assembly ProteinDLA-DQB1MHC class II DLA-DQ beta chain b1 domain1024e-22O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta73.23e-13O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta73.23e-13O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBoLA-DRB3major histocompatibility complex, class II, DRB31256e-29O
Contig/Assembly ProteinLOC538700similar to major histocompatibility complex, class II, DR beta 5 precursor926e-19O
Contig/Assembly ProteinBLA-DQBMHC class II antigen79.73e-15O
Contig/Assembly ProteinBOLA-DQBmajor histocompatibility complex, class II, DQ beta795e-15O
Contig/Assembly ProteinLOC618722similar to H-2 class II histocompatibility antigen, I-E beta chain precursor77.81e-14O
Contig/Assembly ProteinBOLA-DYBmajor histocompatibility complex, class II, DY beta77.41e-14O
Contig/Assembly ProteinBOLA-DOBmajor histocompatibility complex, class II, DO beta65.94e-11O
Contig/Assembly ProteinLOC617421similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7)53.52e-07O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Member: 1      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
UTR010080G07UTR01_0080_G07.b