[Overview] [RefSeq] [Assembly & SNP]
Assembly Name: 20060611S-065059
Length:
924
Sequence:
[FASTA format sequence]
TTTGGTGXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXCAGTACCC GTTTGAGTGG GACTTGCCTG CTCCCCTACC
TCTCTGTCCT CTCCTGTTCT CCTCCATGTT GCATCTGTGT TTCTCCTTAG GCTTCTGGAT
GGCAGCTCCG ACCATGATGC TGGTGGTGCT GACCCCTCCC TTGGGTTTGG TCAGAGACAC
CCCACCGCAT TTCTTGTTTC TGGGGAAAGC TGATTGTCAT TTCTTCAACG GGACTGAACG
GGTGAGGTTT CTGGACATAT ACTTCTATAC TGGATATGAT GACTTGCTCT TCAACATCAA
CCTGGGCGAG TTCCGGGAAG TGACCGAATT TGGGCGGCCA GACTCCATTA CTGGAACTTC
CAAATAGACT TCTTGGAGCT CACGCCGGGG TACGTGGACT CAGTGTGCCG ACTCAACTAC
AAGATCTTAC AGACCTTCCT CCTGCCCTTG CTAGCTGAGC CAACAATGAC AGTGTACCCT
GCAAATACCC TGCCCCTGGC ACACCCCAAC CTCATGCTCT GCTCTGTGAC CGGCTGTCTA
CCCACCCCTT GTGGAGGTCA TGAGGCTCCC GAATGGCTGG GACCATGCGT ATGCCGTGGT
CTCCACCCGC CTGATCCCTA ATGAAGACTG GACCTTCCAG ACCCTGGTGA TTGCTTGACT
CTGTGCCTCA GACTGGACTA GATCTACCCT CGCCGAGTGC AGCACCCCAG CCTGACAAGC
CCCTTCTCAG TGGAGTGCCC GATACGGTCT GAATCTGTTC ACGGCAAGAT GATGATTGGT
ATCCGGCGCT TTGTCCTGGG AACTGCTCCT TGTTGCAGTG GGGTTGATCA ACCTCTTCTC
CAGTCGGAAA AGACGCCTCT GCCCTTCAAC CCACAAAGCC TTCTTAAGCT GTAATGGCAA
ATGGTGACTC TTCCAAGGAA ATATTCTTCT TGTCCAGCCT TCCTTTCCCT CTTTAGAAAG
GTTCCTGCTT TTTCTCTGCC TATCTCTCCC CAAGAAAACT TTTTCCCTAG AAACCTCCCT
TTTCCTTTTT GGTTTTGGGG AACTTTTAAA AAAAAAAGCC CCTTTGGATT GTTTTTCCCA
GCCCCCCCCC CCCCTCTTTA CCCCTGGAAT TTTCCCTGCC AATATTATCC CCCTTATCCC
CCATTTTTTT TTAATTTTTT TTTTTTTTTT TTTTTTTTTT TTTAAAAGGC TTGTCCCCCC
CCCCCCCTCC TTCCCTCCTC CTCCAAACCC CTTTTTTACA ACAATCCCCC CATCCACCCA
GAGGGGGATG AAAGAGATCC TACATG
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
HLA-DRB3 | major histocompatibility complex, class II, DR beta 3 | 108 | 8e-24 | O | ||
HLA-DRB5 | major histocompatibility complex, class II, DR beta 5 | 107 | 1e-23 | O | ||
HLA-DRB1 | major histocompatibility complex, class II, DR beta 1 | 107 | 2e-23 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 104 | 9e-23 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 104 | 9e-23 | O | ||
HLA-DRB4 | major histocompatibility complex, class II, DR beta 4 | 103 | 2e-22 | O | ||
LOC649143 | similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) | 87.8 | 1e-17 | O | ||
HLA-DQB2 | major histocompatibility complex, class II, DQ beta 2 | 86.7 | 3e-17 | O | ||
LOC654155 | similar to HLA class II histocompatibility antigen, DR-W53 beta chain precursor | 77.4 | 7e-19 | O | ||
HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 | 77 | 2e-14 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
H2-Eb1 | histocompatibility 2, class II antigen E beta | 112 | 7e-25 | O | ||
A130038H09Rik | RIKEN cDNA A130038H09 gene | 92.8 | 4e-19 | O | ||
H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 | 75.5 | 7e-14 | O | ||
H2-Ob | histocompatibility 2, O region beta locus | 67 | 3e-11 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
DLA-DRB1 | MHC class II DLA DRB1 beta chain | 117 | 1e-26 | O | ||
DLA-DQB1 | MHC class II DLA-DQ beta chain b1 domain | 102 | 4e-22 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 73.2 | 3e-13 | O | ||
HLA-DOB | major histocompatibility complex, class II, DO beta | 73.2 | 3e-13 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
BoLA-DRB3 | major histocompatibility complex, class II, DRB3 | 125 | 6e-29 | O | ||
LOC538700 | similar to major histocompatibility complex, class II, DR beta 5 precursor | 92 | 6e-19 | O | ||
BLA-DQB | MHC class II antigen | 79.7 | 3e-15 | O | ||
BOLA-DQB | major histocompatibility complex, class II, DQ beta | 79 | 5e-15 | O | ||
LOC618722 | similar to H-2 class II histocompatibility antigen, I-E beta chain precursor | 77.8 | 1e-14 | O | ||
BOLA-DYB | major histocompatibility complex, class II, DY beta | 77.4 | 1e-14 | O | ||
BOLA-DOB | major histocompatibility complex, class II, DO beta | 65.9 | 4e-11 | O | ||
LOC617421 | similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7) | 53.5 | 2e-07 | O |
Locus | Definition | Score | E value | FL |
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