[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20080515C-002696
Length:
918
Sequence:
[FASTA format sequence]
CACAGATGAA GAAGTGGAAT GTTACCAGCC TCTCACAAAT CCCCTGCAAG CTCCCTTGCA
GGCAGCCTGG ACCAAAGACA TTAATACTCT GCCTTCATTC CCTCAATGAG GAATTTTGTC
ATCTTATCAA CTGAAGCAAT GATGCAGTTG TTAACTGAAC CAGACTTGAA GCCGCTTGTC
CACACGCAGT AAAGCCAGTC TACTGACACT GGATTGGATT CTGGTAAAGG CTGCTTCGAG
TGCTGCATCA AGTGTCTGGG AGGAGTCCCC TACGCCTCCC TGGTGGCCAC CATCCTCTGC
TTCTCGGGGG TGGCCTTGTT CTGCGGCTGT GGGCATGTGG CCCTGGCGGG CACCGTGGCC
ATCCTGGAGC AGCACTTCTC CACCAACACC AGTGACCATG CCCTGCTGAG CGAGGTAATC
CAACTGATGC AGTACGTCAT CTACGGCATC GCGTCCTTCT TCTTCTTGTA CGGGATCATC
CTGTTGGCAG AGGGCTTCTA CACCACCAGC GCAGTCAAGG AGCTGCACGG CGAGTTTAAG
ACAACCGCCT GTGGCCGCTG CATCAGCGGG ATGTTTGTCT TCCTCACCTA CGTGCTGGGA
GTGGCCTGGC TGGGCGTGTT CGGTTTCTCC GCGGTGCCGG TGTTCATGTT CTACAACATA
TGGTCCACCT GTGAAGTCAT CAAGGCCCCC CAGAGCAACG GGACAGCCGG GGTGGAGCAG
ATCTGTGTGG ACATCCGGCA ATACGGCATC ATCCCTTGGA ACGCCTTCCC CGGAAAATAT
GTGGCTCTGC CCTGGAGAAC ATCTGCAACA CCAACGAGTT CTACATGTCC TACCACCTGT
TCATCGTGGC CTGTGCGGGA GCTGGCGCTA CCGTCATCGC CCTGATCCAC TTCCTCATGA
TACTGTCTTC TAACTGGG
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
GPM6B | glycoprotein M6B isoform 3 | 382 | e-126 | O | ||
GPM6B | glycoprotein M6B isoform 1 | 378 | e-130 | O | ||
GPM6B | glycoprotein M6B isoform 2 | 378 | e-125 | O | ||
GPM6B | glycoprotein M6B isoform 4 | 377 | e-124 | O | ||
PLP1 | proteolipid protein 1 isoform 2 | 232 | 1e-71 | O | ||
GPM6A | glycoprotein M6A isoform 1 | 214 | 2e-67 | O | ||
GPM6A | glycoprotein M6A isoform 2 | 214 | 2e-67 | O | ||
PLP1 | proteolipid protein 1 isoform 1 | 214 | 2e-66 | O | ||
PLP1 | proteolipid protein 1 isoform 1 | 214 | 2e-66 | O | ||
GPM6A | glycoprotein M6A isoform 3 | 212 | 8e-67 | O |
Locus | Definition | Score | E value | FL |
---|
Locus | Definition | Score | E value | FL |
---|
Locus | Definition | Score | E value | FL |
---|
Locus | Definition | Score | E value | FL |
---|
|
20080515C-002696 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVRM1_0188_D04.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0114_A04.b :
OVRM1_0160_D10.b :
OVRM1_0116_B11.b :
OVRM1_0111_B06.b :
20080515C-002696 : .CACAGATGAAGAAGTGGAATGTTACCAGCCTCTCACAAATCCCCTGCAAGCTCCCTTGC
---------+---------+---------+---------+---------+---------+ 59
OVRM1_0188_D04.b : xCACAGATGAAGAAGTGGAATGTTACCAGCCTCTCACAAATCCCCTGCAAGCTCCCTTGC
OVRM1_0114_A04.b :
OVRM1_0160_D10.b : cagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0116_B11.b :
OVRM1_0111_B06.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20080515C-002696 : AGGCAGCCTGGACCAAAGACATTAATACTCTGCCTTCATTCCCTCAATGAGGAATTTTGT
---------+---------+---------+---------+---------+---------+ 119
OVRM1_0188_D04.b : AGGCAGCCTGGACCAAAGACATTAATACTCTGCCTTCATTCCCTCAATGAGGAATTTTGT
OVRM1_0114_A04.b : caattgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0160_D10.b : xxxxxxxxxxxxxxxxxgcgaagaccagccgccagcccggcagcccagcgcagcccgccc
OVRM1_0116_B11.b : nagttgtcxxxxxxxxxxxxxxxxxxxxx
OVRM1_0111_B06.b : xxxxxxxxxxxxxxxxxgcgaagaccagccgccagcccggcagcccagcgcagcccgccc
20080515C-002696 : CATCTTATCAACTGAAGCAATGATGCAGTTGTTAACTGAACCAGACTTGAAGCCGCTTGT
---------+---------+---------+---------+---------+---------+ 179
OVRM1_0188_D04.b : CATCTTATCAACTGAAGCAATGATGCAGTTGTTAACTGAACCAGACTTGAAGCCGCTTGT
OVRM1_0114_A04.b : xxxxxxxxxcctgcccgccggacctgcaaacttgtgccaccggctctgcctgtccccagg
OVRM1_0160_D10.b : gcccgcgcacgtgcccgccggacctgcaaacttgtgccaccggctctgcccgtccccagg
OVRM1_0116_B11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtggacagatgaagaagtggaatgttacca
OVRM1_0111_B06.b : gcccgcgcacgtgcccgccggacctgcaaacttgtgccaccggctctgcccgtccccagg
20080515C-002696 : CCACACGCAGTAAAGCCAGTCTACTGACACTGGATTGGATTCTGGTAAAGGCTGCTTCGA
---------+---------+---------+---------+---------+---------+ 239
OVRM1_0188_D04.b : CCACACGCAGTAAAGCCAGTCTACTGACACTGGATTGGATTCTGGTAAAGGCTGCTTCGA
OVRM1_0114_A04.b : gagcccgagcgtccgcggccctcgcccctcccgcccgtcaccagccatgGGCTGCTTCGA
OVRM1_0160_D10.b : gagcccgagcgtccgcggccctcgcccctcccgcccgtctccagccatgGGCTGCTTCGA
OVRM1_0116_B11.b : gcctctcacaaatcccctgcaagctcccttgcaggcagcctggaccaaaGGCTGCTTCGA
OVRM1_0111_B06.b : gagcccgagcgtccgcggccctcgcccctcccgcccgtctccagccatgGGCTGCTTCGA
20080515C-002696 : GTGCTGCATCAAGTGTCTGGGAGGAGTCCCCTACGCCTCCCTGGTGGCCACCATCCTCTG
---------+---------+---------+---------+---------+---------+ 299
OVRM1_0188_D04.b : GTGCTGCATCAAGTGTCTGGGAGGAGTCCCCTACGCCTCCCTGGTGGCCACCATCCTCTG
OVRM1_0114_A04.b : GTGCTGCATCAAGTGTCTGGGAGGAGTCCCCTACGCCTCCCTGGTGGCCACCATCCTCTG
OVRM1_0160_D10.b : GTGCTGCATCAAGTGTCTGGGAGGAGTCCCCTACGCCTCCCTGGTGGCCACCATCCTCTG
OVRM1_0116_B11.b : GTGCTGCATCAAGTGTCTGGGAGGAGTCCCCTACGCCTCCCTGGTGGCCACCATCCTCTG
OVRM1_0111_B06.b : GTGCTGCATCAAGTGTCTGGGAGGAGTCCCCTACGCCTCCCTGGTGGCCACCATCCTCTG
20080515C-002696 : CTTCTCGGGGGTGGCCTTGTTCTGCGGCTGTGGGCATGTGGCCCTGGCGGGCACCGTGGC
---------+---------+---------+---------+---------+---------+ 359
OVRM1_0188_D04.b : CTTCTCGGGGGTGGCCTTGTTCTGCGGCTGTGGGCATGTGGCCCTGGCGGGCACCGTGGC
OVRM1_0114_A04.b : CTTCTCGGGGGTGGCCTTGTTCTGCGGCTGTGGGCATGTGGCCCTGGCGGGCACCGTGGC
OVRM1_0160_D10.b : CTTCTCGGGGGTGGCCTTGTTCTGCGGCTGTGGGCATGTGGCCCTGGCGGGCACCGTGGC
OVRM1_0116_B11.b : CTTCTCGGGGGTGGCCTTGTTCTGCGGCTGTGGGCATGTGGCCCTGGCGGGCACCGTGGC
OVRM1_0111_B06.b : CTTCTCGGGGGTGGCCTTGTTCTGCGGCTGTGGGCATGTGGCCCTGGCGGGCACCGTGGC
20080515C-002696 : CATCCTGGAGCAGCACTTCTCCACCAACACCAGTGACCATGCCCTGCTGAGCGAGGTAAT
---------+---------+---------+---------+---------+---------+ 419
OVRM1_0188_D04.b : CATCCTGGAGCAGCACTTCTCCACCAACACCAGTGACCATGCCCTGCTGAGCGAGGTAAT
OVRM1_0114_A04.b : CATCCTGGAGCAGCACTTCTCCACCAACACCTGTTACCATGCCCTGCTGAGCGAGGTAAT
OVRM1_0160_D10.b : CATCCTGGAGCAGCACTTCTCCACCAACACCAGTGACCATGCCCTGCTGAGCGAAGTAAT
OVRM1_0116_B11.b : CATCCTGGAGCAGCACTTCTCCACCAACACCAGTGACCATGCCCTGCTGAGCGAGGTAAT
OVRM1_0111_B06.b : CATCCTGGAGCAGCACTTCTCCACCAACACCAGTGACCATGCCCTGCTGAGCGAGGTAAT
20080515C-002696 : CCAACTGATGCAGTACGTCATCTACGGCATCGCGTCCTTCTTCTTCTTGTACGGGATCAT
---------+---------+---------+---------+---------+---------+ 479
OVRM1_0188_D04.b : CCAACTGATGCAGTACGTCATCTACGGCATCGCGTCCTTCTTCTTCTTGTACGGGATCAT
OVRM1_0114_A04.b : CCAACTGATGCAGTACGTCATCTACGGCATCGCGTCCTTCTTCTTCTTGTACGGGATCAT
OVRM1_0160_D10.b : CCAACTGATGCAGTACGTCATCTACGGCATCGCGTCCTTCTTCTTCTTGTACGGGATCAT
OVRM1_0116_B11.b : CCAACTGATGCAGTACGTCATCTACGGCATCGCGTCCTTCTTCTTCTTGTACGGGATCAT
OVRM1_0111_B06.b : CCAACTGATGCAGTACGTCATCTACGGCATCGCGTCCTTCTTCTTCTTGTACGGGATCAT
20080515C-002696 : CCTGTTGGCAGAGGGCTTCTACACCACCAGCGCAGTCAAGGAGCTGCACGGCGAGTTTAA
---------+---------+---------+---------+---------+---------+ 539
OVRM1_0188_D04.b : CCTGTTGGCAGAGGGCTTCTACACCACCAGCGCAGTCAAGGAGCTGCACGGCGAGTTTAA
OVRM1_0114_A04.b : CCTGTTGGCAGAGGGCTTCTACACCACCAGCGCAGTCAAGGAGCTGCACGGCGAGTTTAA
OVRM1_0160_D10.b : CCTGTTGGCAGAGGGCTTCTACACCACCAGCGCAGTCAAGGAGCTGCACGGCGAGTTTAA
OVRM1_0116_B11.b : CCTGTTGGCAGAGGGCTTCTACACCACCAGCGCAGTCAAGGAGCTGCACGGCGAGTTTAA
OVRM1_0111_B06.b : CCTGTTGGCAGAGGGCTTCTACACCACCAGCGCAGTCAAGGAGCTGCACGGCGAGTTTAA
20080515C-002696 : GACAACCGCCTGTGGCCGCTGCATCAGCGGGATGTTTGTCTTCCTCACCTACGTGCTGGG
---------+---------+---------+---------+---------+---------+ 599
OVRM1_0188_D04.b : GACAACCGCCTGTGGCCGCTGCATCAGCGGGATGTTTGTCTTCCTCACCTACGTGCTGGG
OVRM1_0114_A04.b : GACAACCGCCTGTGGCCGCTGCATCAGCGGGATGTTTGTCTTCCTCACCTACGTGCTGGG
OVRM1_0160_D10.b : GACAACCGCCTGTGGCCGCTGCATCAGCGGGATGTTTGTCTTCCTCACCTACGTGCTGGG
OVRM1_0116_B11.b : GACAACCGCCTGTGGCCGCTGCATCAGCGGGATGTTTGTCTTCCTCACCTACGTGCTGGG
OVRM1_0111_B06.b : GACAACCGCCTGTGGCCGCTGCATCAGCGGGATGTTTGTCTTCCTCACCTACGTGCTGGG
20080515C-002696 : AGTGGCCTGGCTGGGCGTGTTCGGTTTCTCCGCGGTGCCGGTGTTCATGTTCTACAACAT
---------+---------+---------+---------+---------+---------+ 659
OVRM1_0188_D04.b : AGTGGCCTGGCTGGGCGTGTTCGGTTTCTCCGCGGTGCCGGTGTTCATGTTCTACAACAT
OVRM1_0114_A04.b : AGTGGCCTGGCTGGGCGTGTTCNGTTTCTCCGCGGTGCCNGTGGCTCTGTTCTACAACAT
OVRM1_0160_D10.b : AGTGGCCTGGCTGGGCGTGTTCGGTTTCTCCGCGGTGCCGGTGTTCATGTTCTACAACAT
OVRM1_0116_B11.b : AGTGGCCTGGCTGGGCGTGTTCGGTTTCTCCGCGGTGCCGGTGTTCATGTTCTACAACAT
OVRM1_0111_B06.b : AGTGGCCTGGCTGGGCGTGTTCGGTTTCTCCGCGGTGCCGGTGTTCATGTTCTACAACAT
20080515C-002696 : ATGGTCCACCTGTGAAGTCATCAAGGCCCCCCAGAGCAACGGGACAGCCGGGGTGGAGCA
---------+---------+---------+---------+---------+---------+ 719
OVRM1_0188_D04.b : ATGGTCCACCTGTGAAGTCATCAAGGCCCCCCAGAGCAACGGGACAGCCGGGGTGGAGCA
OVRM1_0114_A04.b : ACGGTCCACCcgtcaagctttgaggcccccttgatcatctgtacanccggtctgcagtag
OVRM1_0160_D10.b : ATGGTCCACCTGTGAAGTCATCAAGGCCCCCCAGAGCAACGGGACAGCCGGGGTGGAGCA
OVRM1_0116_B11.b : ATGGTCCACCTGTGAAGTCATCAAGGCCCCCCAGAGCAACGGGACAGCCGGGGTGGAGCA
OVRM1_0111_B06.b : ATGGTCCACCTGTGAAGTCATCAAGGGCCCCCAGAGCAACGGGACAGCCGGGGTGGAGCA
20080515C-002696 : GATCTGTGTGGACATCCGGCAATACGGCATCATCCCTTGGAACGCCTTCCCCGG*AAAAT
---------+---------+---------+---------+---------+---------+ 778
OVRM1_0188_D04.b : GATCTGTGTGGACATCCGGCAATACGGCATCATCC
OVRM1_0114_A04.b : atctgtttgcattnccgccgtacggtatttcctctgtaacgcctcttccgtatcatttgt
OVRM1_0160_D10.b : GATCTGTGTGGACATCCGGCAATAcagcatcatcccttggaacgccttccccggaaaaat
OVRM1_0116_B11.b : GATCTGTGTGGACATCCGGCAATACGGCATCATCCCTTGGAACGCCTTCCCCGGGAAAAT
OVRM1_0111_B06.b : GATCTGTGTGGACATCCGGCAATACGGCATCATCCCTTGGGACGCCTTCCCCGG*AAAAT
20080515C-002696 : ATGTGGCTCTGCCCTGGAGAACATCTGCAACACCAACGAGTTCTACATGTCCTACCACCT
---------+---------+---------+---------+---------+---------+ 838
OVRM1_0188_D04.b :
OVRM1_0114_A04.b : ggctctgcccggtataagccctggatacgtagcagtttacacgtcttataacggtttcgt
OVRM1_0160_D10.b : atgtggttctgccctgggaaaaatctgc
OVRM1_0116_B11.b : ATGTGGCTCTGCCCTGGAGAACATCTGCAACACCAACGAGTTCTACATGTCCTACCACCT
OVRM1_0111_B06.b : ATGTGGCTCTGCCCTGGAGAACATCTGCAACACCAACGAGTTCTACAGGTCCTACCACCT
20080515C-002696 : GTTCATCGTGGCCTGTGCGGGAGCTGGCGCTACCGTCATCGCCCTGATCCACTTCCTCAT
---------+---------+---------+---------+---------+---------+ 898
OVRM1_0188_D04.b :
OVRM1_0114_A04.b : tgggtncggggcgaagttggcnccatagccatntccgtgatctacttctcgatt
OVRM1_0160_D10.b :
OVRM1_0116_B11.b : GTTCATCGTGGCCTGTGCGGGAGCTGGCGCTACCGTCATCGCCCTGATCCACTTCCTCAT
OVRM1_0111_B06.b : GTTCATCGTGGCCTGTGCCGGAGCTGG
20080515C-002696 : GATACTGTCTTCTAACTGGG........................................
---------+---------+---------+---------+---------+---------+ 918
OVRM1_0188_D04.b :
OVRM1_0114_A04.b :
OVRM1_0160_D10.b :
OVRM1_0116_B11.b : GATACTGTCTTCTAACTGGGcttacn
OVRM1_0111_B06.b :