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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20080515C-002696

Length: 918

Sequence [FASTA format sequence]
CACAGATGAA GAAGTGGAAT GTTACCAGCC TCTCACAAAT CCCCTGCAAG CTCCCTTGCA
GGCAGCCTGG ACCAAAGACA TTAATACTCT GCCTTCATTC CCTCAATGAG GAATTTTGTC
ATCTTATCAA CTGAAGCAAT GATGCAGTTG TTAACTGAAC CAGACTTGAA GCCGCTTGTC
CACACGCAGT AAAGCCAGTC TACTGACACT GGATTGGATT CTGGTAAAGG CTGCTTCGAG
TGCTGCATCA AGTGTCTGGG AGGAGTCCCC TACGCCTCCC TGGTGGCCAC CATCCTCTGC
TTCTCGGGGG TGGCCTTGTT CTGCGGCTGT GGGCATGTGG CCCTGGCGGG CACCGTGGCC
ATCCTGGAGC AGCACTTCTC CACCAACACC AGTGACCATG CCCTGCTGAG CGAGGTAATC
CAACTGATGC AGTACGTCAT CTACGGCATC GCGTCCTTCT TCTTCTTGTA CGGGATCATC
CTGTTGGCAG AGGGCTTCTA CACCACCAGC GCAGTCAAGG AGCTGCACGG CGAGTTTAAG
ACAACCGCCT GTGGCCGCTG CATCAGCGGG ATGTTTGTCT TCCTCACCTA CGTGCTGGGA
GTGGCCTGGC TGGGCGTGTT CGGTTTCTCC GCGGTGCCGG TGTTCATGTT CTACAACATA
TGGTCCACCT GTGAAGTCAT CAAGGCCCCC CAGAGCAACG GGACAGCCGG GGTGGAGCAG
ATCTGTGTGG ACATCCGGCA ATACGGCATC ATCCCTTGGA ACGCCTTCCC CGGAAAATAT
GTGGCTCTGC CCTGGAGAAC ATCTGCAACA CCAACGAGTT CTACATGTCC TACCACCTGT
TCATCGTGGC CTGTGCGGGA GCTGGCGCTA CCGTCATCGC CCTGATCCAC TTCCTCATGA
TACTGTCTTC TAACTGGG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinGPM6Bglycoprotein M6B isoform 3 382e-126O
Contig/Assembly ProteinGPM6Bglycoprotein M6B isoform 1 378e-130O
Contig/Assembly ProteinGPM6Bglycoprotein M6B isoform 2 378e-125O
Contig/Assembly ProteinGPM6Bglycoprotein M6B isoform 4 377e-124O
Contig/Assembly ProteinPLP1proteolipid protein 1 isoform 2 2321e-71O
Contig/Assembly ProteinGPM6Aglycoprotein M6A isoform 1 2142e-67O
Contig/Assembly ProteinGPM6Aglycoprotein M6A isoform 2 2142e-67O
Contig/Assembly ProteinPLP1proteolipid protein 1 isoform 1 2142e-66O
Contig/Assembly ProteinPLP1proteolipid protein 1 isoform 1 2142e-66O
Contig/Assembly ProteinGPM6Aglycoprotein M6A isoform 3 2128e-67O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Members: 5      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
OVRM10111B06OVRM1_0111_B06.bBP146735 
OVRM10114A04OVRM1_0114_A04.bBP145232 AK235772
OVRM10116B11OVRM1_0116_B11.bBP147279 
OVRM10160D10OVRM1_0160_D10.bBP458230 
OVRM10188D04OVRM1_0188_D04.bBP457766 AK236392

  

Alignment:      TOP

20080515C-002696 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVRM1_0188_D04.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0114_A04.b :
OVRM1_0160_D10.b :
OVRM1_0116_B11.b :
OVRM1_0111_B06.b :
20080515C-002696 : .CACAGATGAAGAAGTGGAATGTTACCAGCCTCTCACAAATCCCCTGCAAGCTCCCTTGC
---------+---------+---------+---------+---------+---------+ 59
OVRM1_0188_D04.b : xCACAGATGAAGAAGTGGAATGTTACCAGCCTCTCACAAATCCCCTGCAAGCTCCCTTGC
OVRM1_0114_A04.b :
OVRM1_0160_D10.b : cagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0116_B11.b :
OVRM1_0111_B06.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20080515C-002696 : AGGCAGCCTGGACCAAAGACATTAATACTCTGCCTTCATTCCCTCAATGAGGAATTTTGT
---------+---------+---------+---------+---------+---------+ 119
OVRM1_0188_D04.b : AGGCAGCCTGGACCAAAGACATTAATACTCTGCCTTCATTCCCTCAATGAGGAATTTTGT
OVRM1_0114_A04.b : caattgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0160_D10.b : xxxxxxxxxxxxxxxxxgcgaagaccagccgccagcccggcagcccagcgcagcccgccc
OVRM1_0116_B11.b : nagttgtcxxxxxxxxxxxxxxxxxxxxx
OVRM1_0111_B06.b : xxxxxxxxxxxxxxxxxgcgaagaccagccgccagcccggcagcccagcgcagcccgccc
20080515C-002696 : CATCTTATCAACTGAAGCAATGATGCAGTTGTTAACTGAACCAGACTTGAAGCCGCTTGT
---------+---------+---------+---------+---------+---------+ 179
OVRM1_0188_D04.b : CATCTTATCAACTGAAGCAATGATGCAGTTGTTAACTGAACCAGACTTGAAGCCGCTTGT
OVRM1_0114_A04.b : xxxxxxxxxcctgcccgccggacctgcaaacttgtgccaccggctctgcctgtccccagg
OVRM1_0160_D10.b : gcccgcgcacgtgcccgccggacctgcaaacttgtgccaccggctctgcccgtccccagg
OVRM1_0116_B11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtggacagatgaagaagtggaatgttacca
OVRM1_0111_B06.b : gcccgcgcacgtgcccgccggacctgcaaacttgtgccaccggctctgcccgtccccagg
20080515C-002696 : CCACACGCAGTAAAGCCAGTCTACTGACACTGGATTGGATTCTGGTAAAGGCTGCTTCGA
---------+---------+---------+---------+---------+---------+ 239
OVRM1_0188_D04.b : CCACACGCAGTAAAGCCAGTCTACTGACACTGGATTGGATTCTGGTAAAGGCTGCTTCGA
OVRM1_0114_A04.b : gagcccgagcgtccgcggccctcgcccctcccgcccgtcaccagccatgGGCTGCTTCGA
OVRM1_0160_D10.b : gagcccgagcgtccgcggccctcgcccctcccgcccgtctccagccatgGGCTGCTTCGA
OVRM1_0116_B11.b : gcctctcacaaatcccctgcaagctcccttgcaggcagcctggaccaaaGGCTGCTTCGA
OVRM1_0111_B06.b : gagcccgagcgtccgcggccctcgcccctcccgcccgtctccagccatgGGCTGCTTCGA
20080515C-002696 : GTGCTGCATCAAGTGTCTGGGAGGAGTCCCCTACGCCTCCCTGGTGGCCACCATCCTCTG
---------+---------+---------+---------+---------+---------+ 299
OVRM1_0188_D04.b : GTGCTGCATCAAGTGTCTGGGAGGAGTCCCCTACGCCTCCCTGGTGGCCACCATCCTCTG
OVRM1_0114_A04.b : GTGCTGCATCAAGTGTCTGGGAGGAGTCCCCTACGCCTCCCTGGTGGCCACCATCCTCTG
OVRM1_0160_D10.b : GTGCTGCATCAAGTGTCTGGGAGGAGTCCCCTACGCCTCCCTGGTGGCCACCATCCTCTG
OVRM1_0116_B11.b : GTGCTGCATCAAGTGTCTGGGAGGAGTCCCCTACGCCTCCCTGGTGGCCACCATCCTCTG
OVRM1_0111_B06.b : GTGCTGCATCAAGTGTCTGGGAGGAGTCCCCTACGCCTCCCTGGTGGCCACCATCCTCTG
20080515C-002696 : CTTCTCGGGGGTGGCCTTGTTCTGCGGCTGTGGGCATGTGGCCCTGGCGGGCACCGTGGC
---------+---------+---------+---------+---------+---------+ 359
OVRM1_0188_D04.b : CTTCTCGGGGGTGGCCTTGTTCTGCGGCTGTGGGCATGTGGCCCTGGCGGGCACCGTGGC
OVRM1_0114_A04.b : CTTCTCGGGGGTGGCCTTGTTCTGCGGCTGTGGGCATGTGGCCCTGGCGGGCACCGTGGC
OVRM1_0160_D10.b : CTTCTCGGGGGTGGCCTTGTTCTGCGGCTGTGGGCATGTGGCCCTGGCGGGCACCGTGGC
OVRM1_0116_B11.b : CTTCTCGGGGGTGGCCTTGTTCTGCGGCTGTGGGCATGTGGCCCTGGCGGGCACCGTGGC
OVRM1_0111_B06.b : CTTCTCGGGGGTGGCCTTGTTCTGCGGCTGTGGGCATGTGGCCCTGGCGGGCACCGTGGC
20080515C-002696 : CATCCTGGAGCAGCACTTCTCCACCAACACCAGTGACCATGCCCTGCTGAGCGAGGTAAT
---------+---------+---------+---------+---------+---------+ 419
OVRM1_0188_D04.b : CATCCTGGAGCAGCACTTCTCCACCAACACCAGTGACCATGCCCTGCTGAGCGAGGTAAT
OVRM1_0114_A04.b : CATCCTGGAGCAGCACTTCTCCACCAACACCTGTTACCATGCCCTGCTGAGCGAGGTAAT
OVRM1_0160_D10.b : CATCCTGGAGCAGCACTTCTCCACCAACACCAGTGACCATGCCCTGCTGAGCGAAGTAAT
OVRM1_0116_B11.b : CATCCTGGAGCAGCACTTCTCCACCAACACCAGTGACCATGCCCTGCTGAGCGAGGTAAT
OVRM1_0111_B06.b : CATCCTGGAGCAGCACTTCTCCACCAACACCAGTGACCATGCCCTGCTGAGCGAGGTAAT
20080515C-002696 : CCAACTGATGCAGTACGTCATCTACGGCATCGCGTCCTTCTTCTTCTTGTACGGGATCAT
---------+---------+---------+---------+---------+---------+ 479
OVRM1_0188_D04.b : CCAACTGATGCAGTACGTCATCTACGGCATCGCGTCCTTCTTCTTCTTGTACGGGATCAT
OVRM1_0114_A04.b : CCAACTGATGCAGTACGTCATCTACGGCATCGCGTCCTTCTTCTTCTTGTACGGGATCAT
OVRM1_0160_D10.b : CCAACTGATGCAGTACGTCATCTACGGCATCGCGTCCTTCTTCTTCTTGTACGGGATCAT
OVRM1_0116_B11.b : CCAACTGATGCAGTACGTCATCTACGGCATCGCGTCCTTCTTCTTCTTGTACGGGATCAT
OVRM1_0111_B06.b : CCAACTGATGCAGTACGTCATCTACGGCATCGCGTCCTTCTTCTTCTTGTACGGGATCAT
20080515C-002696 : CCTGTTGGCAGAGGGCTTCTACACCACCAGCGCAGTCAAGGAGCTGCACGGCGAGTTTAA
---------+---------+---------+---------+---------+---------+ 539
OVRM1_0188_D04.b : CCTGTTGGCAGAGGGCTTCTACACCACCAGCGCAGTCAAGGAGCTGCACGGCGAGTTTAA
OVRM1_0114_A04.b : CCTGTTGGCAGAGGGCTTCTACACCACCAGCGCAGTCAAGGAGCTGCACGGCGAGTTTAA
OVRM1_0160_D10.b : CCTGTTGGCAGAGGGCTTCTACACCACCAGCGCAGTCAAGGAGCTGCACGGCGAGTTTAA
OVRM1_0116_B11.b : CCTGTTGGCAGAGGGCTTCTACACCACCAGCGCAGTCAAGGAGCTGCACGGCGAGTTTAA
OVRM1_0111_B06.b : CCTGTTGGCAGAGGGCTTCTACACCACCAGCGCAGTCAAGGAGCTGCACGGCGAGTTTAA
20080515C-002696 : GACAACCGCCTGTGGCCGCTGCATCAGCGGGATGTTTGTCTTCCTCACCTACGTGCTGGG
---------+---------+---------+---------+---------+---------+ 599
OVRM1_0188_D04.b : GACAACCGCCTGTGGCCGCTGCATCAGCGGGATGTTTGTCTTCCTCACCTACGTGCTGGG
OVRM1_0114_A04.b : GACAACCGCCTGTGGCCGCTGCATCAGCGGGATGTTTGTCTTCCTCACCTACGTGCTGGG
OVRM1_0160_D10.b : GACAACCGCCTGTGGCCGCTGCATCAGCGGGATGTTTGTCTTCCTCACCTACGTGCTGGG
OVRM1_0116_B11.b : GACAACCGCCTGTGGCCGCTGCATCAGCGGGATGTTTGTCTTCCTCACCTACGTGCTGGG
OVRM1_0111_B06.b : GACAACCGCCTGTGGCCGCTGCATCAGCGGGATGTTTGTCTTCCTCACCTACGTGCTGGG
20080515C-002696 : AGTGGCCTGGCTGGGCGTGTTCGGTTTCTCCGCGGTGCCGGTGTTCATGTTCTACAACAT
---------+---------+---------+---------+---------+---------+ 659
OVRM1_0188_D04.b : AGTGGCCTGGCTGGGCGTGTTCGGTTTCTCCGCGGTGCCGGTGTTCATGTTCTACAACAT
OVRM1_0114_A04.b : AGTGGCCTGGCTGGGCGTGTTCNGTTTCTCCGCGGTGCCNGTGGCTCTGTTCTACAACAT
OVRM1_0160_D10.b : AGTGGCCTGGCTGGGCGTGTTCGGTTTCTCCGCGGTGCCGGTGTTCATGTTCTACAACAT
OVRM1_0116_B11.b : AGTGGCCTGGCTGGGCGTGTTCGGTTTCTCCGCGGTGCCGGTGTTCATGTTCTACAACAT
OVRM1_0111_B06.b : AGTGGCCTGGCTGGGCGTGTTCGGTTTCTCCGCGGTGCCGGTGTTCATGTTCTACAACAT
20080515C-002696 : ATGGTCCACCTGTGAAGTCATCAAGGCCCCCCAGAGCAACGGGACAGCCGGGGTGGAGCA
---------+---------+---------+---------+---------+---------+ 719
OVRM1_0188_D04.b : ATGGTCCACCTGTGAAGTCATCAAGGCCCCCCAGAGCAACGGGACAGCCGGGGTGGAGCA
OVRM1_0114_A04.b : ACGGTCCACCcgtcaagctttgaggcccccttgatcatctgtacanccggtctgcagtag
OVRM1_0160_D10.b : ATGGTCCACCTGTGAAGTCATCAAGGCCCCCCAGAGCAACGGGACAGCCGGGGTGGAGCA
OVRM1_0116_B11.b : ATGGTCCACCTGTGAAGTCATCAAGGCCCCCCAGAGCAACGGGACAGCCGGGGTGGAGCA
OVRM1_0111_B06.b : ATGGTCCACCTGTGAAGTCATCAAGGGCCCCCAGAGCAACGGGACAGCCGGGGTGGAGCA
20080515C-002696 : GATCTGTGTGGACATCCGGCAATACGGCATCATCCCTTGGAACGCCTTCCCCGG*AAAAT
---------+---------+---------+---------+---------+---------+ 778
OVRM1_0188_D04.b : GATCTGTGTGGACATCCGGCAATACGGCATCATCC
OVRM1_0114_A04.b : atctgtttgcattnccgccgtacggtatttcctctgtaacgcctcttccgtatcatttgt
OVRM1_0160_D10.b : GATCTGTGTGGACATCCGGCAATAcagcatcatcccttggaacgccttccccggaaaaat
OVRM1_0116_B11.b : GATCTGTGTGGACATCCGGCAATACGGCATCATCCCTTGGAACGCCTTCCCCGGGAAAAT
OVRM1_0111_B06.b : GATCTGTGTGGACATCCGGCAATACGGCATCATCCCTTGGGACGCCTTCCCCGG*AAAAT
20080515C-002696 : ATGTGGCTCTGCCCTGGAGAACATCTGCAACACCAACGAGTTCTACATGTCCTACCACCT
---------+---------+---------+---------+---------+---------+ 838
OVRM1_0188_D04.b :
OVRM1_0114_A04.b : ggctctgcccggtataagccctggatacgtagcagtttacacgtcttataacggtttcgt
OVRM1_0160_D10.b : atgtggttctgccctgggaaaaatctgc
OVRM1_0116_B11.b : ATGTGGCTCTGCCCTGGAGAACATCTGCAACACCAACGAGTTCTACATGTCCTACCACCT
OVRM1_0111_B06.b : ATGTGGCTCTGCCCTGGAGAACATCTGCAACACCAACGAGTTCTACAGGTCCTACCACCT
20080515C-002696 : GTTCATCGTGGCCTGTGCGGGAGCTGGCGCTACCGTCATCGCCCTGATCCACTTCCTCAT
---------+---------+---------+---------+---------+---------+ 898
OVRM1_0188_D04.b :
OVRM1_0114_A04.b : tgggtncggggcgaagttggcnccatagccatntccgtgatctacttctcgatt
OVRM1_0160_D10.b :
OVRM1_0116_B11.b : GTTCATCGTGGCCTGTGCGGGAGCTGGCGCTACCGTCATCGCCCTGATCCACTTCCTCAT
OVRM1_0111_B06.b : GTTCATCGTGGCCTGTGCCGGAGCTGG
20080515C-002696 : GATACTGTCTTCTAACTGGG........................................
---------+---------+---------+---------+---------+---------+ 918
OVRM1_0188_D04.b :
OVRM1_0114_A04.b :
OVRM1_0160_D10.b :
OVRM1_0116_B11.b : GATACTGTCTTCTAACTGGGcttacn
OVRM1_0111_B06.b :