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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20101001C-007140

Length: 1,000

Sequence [FASTA format sequence]
GAGACCTGGC AGGGATTTGG GACGCTGGAC AGGCAGTTTC TTCACGTAGC CAGAGTGCGA
ACGTGGGGTG CAAAACGGGT CCTTTGCGGC GCGGTGGGTT CGGGGCCCTG GCAGCCGTTT
TGCGGAGGTG CCACGCCCTA GGGGCTGGGC CGTGGTGGGC CCGGGGTCTA CTCCGACCAC
CTGGACCGCG AAGTGGCCTG GGAACTGGAA GGAAGATGTT CCCCGGGCGC TGTCCGCCGC
CCGCGCTACT GGGCCGAGGT CCCCATCTCA ACGTAGATTC TCTTTTTCCC CTCTTCTGCA
GGCTCGTTTC TGGCATGATG GCGCAAAGGG CCTTCCCGAA TCCTTATGCA GATTTTAACA
AATCCCTGGC CGAAGGCTAC TTTGATTCTG CTGGGAGGCT CACTCCTGAG TTCTCACAAC
GTGTGAACAA TAAGATTCGA GAGCTGCTTC AGCAAATGGA GAGAGGCCTA AAATCAGCAG
ACCCTCGCGA TGGCACTGCT TACACTGGAT GGGCAGGTAT CGCTGTGCTT TACTTACACC
TCTATGATGT GTTTGGGGAC CCTGCCTACC TGCAGATGGC ACATGGCTAT GCAAAGCAAA
GTCTGAACTG TTTGACCAAG CGTTCCATCA CCTTCCTGTG TGGTGATGCG GGCCCCCTGG
CAGTGGCTGC TGTGGTGCAT GACAAGATGA ACAATGAGAA GCAGGCAGAA GACTGTATCA
CCCGGCTAAT TCACCTAAAT AAGATTGACC CGCATGCTCC AAATGAAATG CTGTATGGAC
GAATGGGCTA CATCTATGCT CTTCTCTTTG TGAATAAGAA CTTTGGAGTA GAAAAGATTC
CTCGAAGCCA TATTCAGCAA ATTTGTGAAA CAATCCTTAC CTCTGGAGAA AACCTAGCTA
GAAAAAAAAA CTTCCAGAAA AAACTCCCCT GATGTATGAA GGGAACAAAA AAATTATGTG
GGGGCTGCTC TGGGCCTGGC AGGAATTTAT TACTACCTGA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL


Assembly Members: 5      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
HTMT10149D11HTMT1_0149_D11.bHX226500 
OVRM10061G05OVRM1_0061_G05.bBP152815 
OVRM10082H02OVRM1_0082_H02.bBP153827 AK235446
PTG010102E03PTG01_0102_E03.bFS712721 
UTR010058F08UTR01_0058_F08.bBP464284 

  

SNPs: 2      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
422C200.400W-
T120.600
446G120.600W-
T200.400


Alignment:      TOP

20101001C-007140 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVRM1_0082_H02.b : acgttgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
HTMT1_0149_D11.b : ttttacgaagtagaggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0061_G05.b : agttgtcxxxxxxxxxxxxxxxxxx
PTG01_0102_E03.b : ngcctttnnnnttttgataaagcag
UTR01_0058_F08.b : cctxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20101001C-007140 : GAGACCTGGCAGGGATTTGGGACGCTGGACAGGCAGTTTCTTCACGTAGCCAGAGTGCGA
---------+---------+---------+---------+---------+---------+ 60
OVRM1_0082_H02.b : GAGACCTGGCAGGGATTTGGGACGCTGGACAGGCAGTTTCTTCACGTAGCCAGAGTGCGA
HTMT1_0149_D11.b : xxxxxxxxxgAGGGATTTGCGACGCTGGACAGGCAGTTTCTTCACGTAGCCAGAGTGCGA
OVRM1_0061_G05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTTCTTCACGTAGCCCGAGTGCGA
PTG01_0102_E03.b : cxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGTAGCCAGAGTGCGA
UTR01_0058_F08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTAGCCAGAGTGCGA
20101001C-007140 : ACGTGGGGTGCAAAACGG*GTCCTTTGCGGCGCGGTGGGTTCGGGGCCCTGGCAGCCGTT
---------+---------+---------+---------+---------+---------+ 119
OVRM1_0082_H02.b : ACGTGGGGTGCAAAACGGAGTCCTTTGCGGCGCGGTGGGTTCGGGGCCCTGGCAGCCGTT
HTMT1_0149_D11.b : ACGTGGGGTGCAAAACGG*GTCCTTTGCGGCGCGGTGGGTTCGGGGCCCTGGCAGCCGTT
OVRM1_0061_G05.b : ACGTGGGGTGCAAAACGG*GTCCTTTGCGGCGCGGTGGGTTCGGGGCCCTGGCAGCCGTT
PTG01_0102_E03.b : ACGTGGGGTGCAAAACGG*GTCCTTTGCGGCGCGGTGGGTTCGGGGCCCTGGCAGCCGTT
UTR01_0058_F08.b : ACGTGGGGTGCAAAACGG*GTCCTTTGCGGCGCGGTGGGTTCGGGGCCCTGGCAGCCGTT
20101001C-007140 : TTGCGGAGGTGCCACGCCCTAGGGGCTGGGCCGTGGTGGGCCCGGGGTCTACTCCGACCA
---------+---------+---------+---------+---------+---------+ 179
OVRM1_0082_H02.b : TTGCGGAGGTGCCACGCCCTAGGGGCTGGGCCGTGGTGGGCCCGGGGTCTACTCCGACCA
HTMT1_0149_D11.b : TTGCGGAGGTGCCACGCCCTAGGGGCTGGGCCGTGGTGGGCCCGGGGTCTACTCCGACCA
OVRM1_0061_G05.b : TTGCGGAGGTGCCACGCCCTAGGGGCTGGGCCGTGGTGGGCCCGGGGTCTACTCCGACCA
PTG01_0102_E03.b : TTGCGGAGGTGCCACGCCCTAGGGGCTGGGCCGTGGTGGGCCCGGGGTCTACTCCGACCA
UTR01_0058_F08.b : TTGCGGAGGTGCCACGCCCTAGGGGCTGGGCCGTGGTGGGCCCGGGGTCTACTCCGACCA
20101001C-007140 : CCTGGACCGCGAAGTGGCCTGGGAACTGGAAGGAAGATGTTCCCCGGGCGCTGTCCGCCG
---------+---------+---------+---------+---------+---------+ 239
OVRM1_0082_H02.b : CCTGGACCGCGAAGTGGCCTGGGAACTGGAAGGAAGATGTTCCCCGGGCGCTGTCCGCCG
HTMT1_0149_D11.b : CCTGGACCGCGAAGTGGCCTGGGAACTGGAAGGAAGATGTTCCCCGGGCGCTGTCCGCCG
OVRM1_0061_G05.b : CCTGGACCGCGAAGTGGCCTGGGAACTGGAAGGAAGATGTTCCCCGGGCGCTGTCCGCCG
PTG01_0102_E03.b : CCTGGACCGCGAAGTGGCCTGGGAACTGGAAGGAAGATGTTCCCCGGGCGCTGTCCGCCG
UTR01_0058_F08.b : CCTGGACCGCGAAGTGGCCTGGGAACTGGAAGGAAGATGTTCCCCGGGCGCTGTCCGCCG
20101001C-007140 : CCCGCGCTACTGGGCCGAGGTCCCCATCTCAACGTAGATTCTCTTTTTCCCCTCTTCTGC
---------+---------+---------+---------+---------+---------+ 299
OVRM1_0082_H02.b : CCCGCGCTACTGGGCCGAGGTCCCCATCTCAACGTAGATTCTCTTTTTCCCCTCTTCTGC
HTMT1_0149_D11.b : CCCGCGCTACTGGGCCGAGGTCCCCATCTCAACGTAGATTCTCTTTTTCCCCTCTTCTGC
OVRM1_0061_G05.b : CCCGCGCTACTGGGCCGAGGTCCCCATCTCAACGTAGATTCTCTTTTTCCCCTCTTCTGC
PTG01_0102_E03.b : CCCGCGCTACTGGGCCGAGGTCCCCATCTCAACGTAGATTCTCTTTTTCCCCTCTTCTGC
UTR01_0058_F08.b : CCCGCGCTACTGGGCCGAGGTCCCCATCTCAACGTAGATTCTCTTTTTCCCCTCTTCTGC
20101001C-007140 : AGGCTCGTTTCTGGCATGATGGCGCAAAGGGCCTTCCCGAATCCTTATGCAGATTTTAAC
---------+---------+---------+---------+---------+---------+ 359
OVRM1_0082_H02.b : AGGCTCGTTTCTGGCATGATGGCGCAAAGGGCCTTCCCGAATCCTTATGCAGATTTTAAC
HTMT1_0149_D11.b : AGGCTCGTTTCTGGCATGATGGCGCAAAGGGCCTTCCCGAATCCTTATGCAGATTTTAAC
OVRM1_0061_G05.b : AGGCTCGTTTCTGGCATGATGGCGCANAGGGCCTTCCCGAATCCTTATGCAGATTTTAAC
PTG01_0102_E03.b : AGGCTCGTTTCTGGCATGGTGGCGCAAAGGGCCTTCCCGAATCCTTATGCAGATTTTAAC
UTR01_0058_F08.b : AGGCTCGTTTCTGGCATGATGGCGCAAAGGGCCTTCCCGAATCCTTATGCAGATTTTAAC
20101001C-007140 : AAATCCCTGGCCGAAGGCTACTTTGATTCTGCTGGGAGGCTCACTCCTGAGTTCTCACAA
---------+---------+---------+---------+---------+---------+ 419
OVRM1_0082_H02.b : AAATCCCTGGCCGAAGGCTACTTTGATTCTGCTGGGAGGCTCACTCCTGAGTTCTCACAA
HTMT1_0149_D11.b : AAATCCCTGGCCGAAGGCTACTTTGATTCTGCTGGGAGGCTCACTCCTGAGTTCTCACAA
OVRM1_0061_G05.b : AAATCCCTGGCCGAAGGCTACTTTGATTCTGCTGGGAGGCTCACTCCTGAGTTCTCACAA
PTG01_0102_E03.b : AAATCCCTGGCCGAAGGCTACTTTGATTCTGCTGGGAGGCTCACTCCTGAGTTCTCACAA
UTR01_0058_F08.b : AAATCCCTGGCCGAAGGCTACTTTGATTCTGCTGGGAGGCTCACTCCTGAGTTCTCACAA
20101001C-007140 : CGTGTGAACAATAAGATTCGAGAGCTGCTTCAGCAAATGGAGAGAGGCCTAAAATCAGCA
---------+---------+---------+---------+---------+---------+ 479
OVRM1_0082_H02.b : CGTGTGAACAATAAGATTCGAGAGCTGCTTCAGCAAATGGAGAGAGGCCTAAAATCAGCA
HTMT1_0149_D11.b : CGTGTGAACAATAAGATTCGAGAGCTGCTTCAGCAAATGGAGAGAGGCCTAAAATCAGCA
OVRM1_0061_G05.b : CGTGTGAACAATAAGATTCGAGAGCTGCTTCAGCAAATGGAGAGAGGCCTAAAATCAGCA
PTG01_0102_E03.b : CGCGTGAACAATAAGATTCGAGAGCTTCTTCAGCAAATGGAGAGAGGCCTANNATCAGCA
UTR01_0058_F08.b : CGCGTGAACAATAAGATTCGAGAGCTTCTTCAGCAAATGGAGAGAGGCCTAAAATCAGCA
20101001C-007140 : GACCCTCGCGATGGCACTGCTTACACTGGATGGGCAGGTATCGCTGTGCTTTACTTACAC
---------+---------+---------+---------+---------+---------+ 539
OVRM1_0082_H02.b : GACCCTCGCGATGGCACTGCTTACACTGGATGGGCAGGTATCGCTGTGCTTTACTTACAC
HTMT1_0149_D11.b : GACCCTCGCGATGGCACTGCTTACACTGGATGGGCAGGTATCGCTGTGCTTTACTTACAC
OVRM1_0061_G05.b : GACCCTCGCGATGGCACTGCTTACACTGGATGGGCAGGTATCGCTGTGCTTTACTTACAC
PTG01_0102_E03.b : GACCCTCGCGATGGCACTGCTTACACTGGATGGGCAGGTATCGCTGTGCTTTACTTACAC
UTR01_0058_F08.b : GACCCTCGCGATGGCACTGCTTACACTGGATGGGCAGGTATCGCTGTGCTTTACTTACAC
20101001C-007140 : CTCTATGATGTGTTTGGGGACCCTGCCTACCTGCAGATGGCACATGGCTATGCAAAGCAA
---------+---------+---------+---------+---------+---------+ 599
OVRM1_0082_H02.b : CTCTATGATGTGTTTGGGGACCCTGCCTACCTGCAGATGGCACATGGCTATGCAAAGCAN
HTMT1_0149_D11.b : CTCTATGATGTGTTTGGGGACCCTGCCTACCTGCAGATGGCACATGGCTATGCAAAGCAA
OVRM1_0061_G05.b : CTCTATGATGTGTTTGGGGACCCTGCCTACCTGCAGATGGCACATGGCTATGCAAAGCAN
PTG01_0102_E03.b : CTCTATGATGTGTTTGGGGACCCTGCCTACCTGCAGATGGCACATGGCTATGCAAAGCAA
UTR01_0058_F08.b : CTCTATGATGTGTTTGGGGACCCTGCCTACCTGCAGATGGCACATGGCTATGCAAAGCAA
20101001C-007140 : AGTCTGAACTGTTTGACCAAGCGTTCCATCACCTTCCTGTGTGGTGATGCGGGCCCCCTG
---------+---------+---------+---------+---------+---------+ 659
OVRM1_0082_H02.b : AGTCTGAACTGTTTGACCAAGCGTTCCATCACCTTCCTGTGTGGTGATGCGGGCCCCCTG
HTMT1_0149_D11.b : AGTCTGAACTGTTTGACCAAGCGTTCCATCACCTTCCTGTGTGGTGATGCGGGCCCCCTG
OVRM1_0061_G05.b : AGTCTGAACTGTTTGACCAAGCGTTCCATCACCTTCCTGTGTGGTGATGCGGGCCCCCTG
PTG01_0102_E03.b : AGTCTGAACTGTTTGACCAAGCGTTCCATCACTTTCCGGTGGGGTGATGCGGGCCCCCTG
UTR01_0058_F08.b : AGTCTGAACTGTTTGACCAAGCGTTCCATCACCTTCCTGTGTGGTGATGCGGGCCCCCTG
20101001C-007140 : GCAGTGGCTGCTGTGGTGCATGACAAGATGAACAATGAGAAGCAGGCAGAAGACTGTATC
---------+---------+---------+---------+---------+---------+ 719
OVRM1_0082_H02.b : GCAGTGGCTGCTGTGGTGCATGACAAGATGAACAATGAGAAGCCAGCAGAAGACTGTATC
HTMT1_0149_D11.b : GCAGTGGCTGCTGTGGTGCATGACAAGATGAACAATGAGAAACAGGCAGAAGACTGTATC
OVRM1_0061_G05.b : GCAGTGGCTGCTGTGGTGCATGACAAGATGAACAATGAGAAGCAGGCAGAAGACTGTATC
PTG01_0102_E03.b : GCAATGGCTGCTGgtgtgcttgaccaaattaaccatgaaaagccgggcaaaaaactgttt
UTR01_0058_F08.b : GCAGTGGCTGCTGTGGTGCATGACAAGATGAACAATGAGAAGCAGGCAGAAGACTGTATC
20101001C-007140 : ACCCGGCTAATTCACCTAAATAAGATTGACCCGCATGCTCCAAATGAAATGCTGTATGGA
---------+---------+---------+---------+---------+---------+ 779
OVRM1_0082_H02.b : ACC
HTMT1_0149_D11.b : ACCCGGCTAATTCACCTAAATAAGATTGACCCGCATGCTCCCAATGAAATGCTGTATGGA
OVRM1_0061_G05.b : ACCCGGCTAATTCACCTNAATNAGATTGACCCGCATGCTCCAAATGAAATGCTGTATGGA
PTG01_0102_E03.b : cccccggcttaattcccctaaataaaattgaccccccaggccccaaattaaaagcttgtt
UTR01_0058_F08.b : ACCCGGCTAATTCACCTAAATAAGATTGACCCGCATGCTCCAAATGAAATGCTGTATGGA
20101001C-007140 : CGAATGGGCTACATCTATGCTCTTCTCTTTGTGAATAAGAACTTTGGAGTAGAAAAGATT
---------+---------+---------+---------+---------+---------+ 839
OVRM1_0082_H02.b :
HTMT1_0149_D11.b : CGAATGGGCTACATCTATGCTCTTCTCTTTGTGAATAGAACTTTGGGAGTAGAAAAGATT
OVRM1_0061_G05.b : CGAATGGGCTACATCTATGCTCT
PTG01_0102_E03.b : ggaacaaaaggggccacactcctggccctccccttttgggaaaaaaaactttgggaataa
UTR01_0058_F08.b : CGAATGGGCTACATCTATGCTCTTCTCTTTGTGAATAAGAACTTTGGAGTAGAAAAGATT
20101001C-007140 : CCTCGAAGCCATATTCAGCAAATTTGTGAAACAATCCTTACCTCTGGAGAAAACCTAGCT
---------+---------+---------+---------+---------+---------+ 899
OVRM1_0082_H02.b :
HTMT1_0149_D11.b : CCTCGAAGCCATATTCAACAAATTTGTGAAAACATCCTTACCTCCTGAAAAAACCTACCT
OVRM1_0061_G05.b :
PTG01_0102_E03.b : aaaaaaattcccccaaacccttttttcccaaattttggaaacaactttttccctcgtgga
UTR01_0058_F08.b : CCTCGAAGCCATATTCAGCAGATTTGTGAAACAGTCTTAACCTCTGGAGAAAACCTAGCT
20101001C-007140 : AGAAAAAAAAACTTCCAGAAAAAACTCCCCTGATGTATGAAGGGAACAAAAAAATTATGT
---------+---------+---------+---------+---------+---------+ 959
OVRM1_0082_H02.b :
HTMT1_0149_D11.b : AGAAAAAaaacttcacgaaaaaatcccctgatggttgaatggtaccagaaattttggggg
OVRM1_0061_G05.b :
PTG01_0102_E03.b : aaaaccctcctttaaaaaaaaaattttcccaaaaaaaaccccccctgtgtgttagagggg
UTR01_0058_F08.b : AGAAAAAAAAACTTCCAGAAAAAACTCCCCTGATGTATGAAGGGAACAAAAAAATTATGT
20101001C-007140 : GGGGGCTGCTCTGGGCCTGGCAGGAATTTATTACTACCTGA...................
---------+---------+---------+---------+---------+---------+ 1000
OVRM1_0082_H02.b :
HTMT1_0149_D11.b : gccgcccatgcctggcaggaatttttactacgggatcacccaaccttcaatgagccggcg
OVRM1_0061_G05.b :
PTG01_0102_E03.b : gccccaaaatttttttggggggggcccctcgggccgccgcgaaatttttttttcccttgg
UTR01_0058_F08.b : GGGGGCTGCTCTGGGCCTGGCAGGAATTTATTACTACCTGAatgcaccccaccctccagt
20101001C-007140 : ............................................................
---------+---------+---------+---------+---------+---------+ 1000
OVRM1_0082_H02.b :
HTMT1_0149_D11.b : aattccaaatttggccaacccagttaaatttgtttgccacttaattccctcaggaataac
OVRM1_0061_G05.b :
PTG01_0102_E03.b : ggggccccccccccctttggggggccgggggaaatttaaaaattttgggcacccccttga
UTR01_0058_F08.b : tgacccttgcaaaagtacaaaatttgggtaaacccaattggtaaattatgtctgcccacc
20101001C-007140 : ............................................................
---------+---------+---------+---------+---------+---------+ 1000
OVRM1_0082_H02.b :
HTMT1_0149_D11.b : cccccgtggggaaaacaccaaatttctatcctttgggcacggtcccccggggaatcaaag
OVRM1_0061_G05.b :
PTG01_0102_E03.b : aaaaaattttgcccccaaaaaaattctccttgggaggacacccctttgtgggggagaacc
UTR01_0058_F08.b : tgaaaattccctttcgggcaatttccccttccttgtgggggaaaaaaactccaaaatttt
20101001C-007140 : ............................................................
---------+---------+---------+---------+---------+---------+ 1000
OVRM1_0082_H02.b :
HTMT1_0149_D11.b : ccttatcgcgcaaaggggtcaaaaaaaagtgtcccagatgcccaccgggcccattttttg
OVRM1_0061_G05.b :
PTG01_0102_E03.b : ccaaattttttgtctttttgggggcccccccccgcgggggaatactcatttcctttccgc
UTR01_0058_F08.b : gcctattcccatttgggggcccccgggtttccccctgggggggaaaaatcctaaattgcc
20101001C-007140 : ............................................................
---------+---------+---------+---------+---------+---------+ 1000
OVRM1_0082_H02.b :
HTMT1_0149_D11.b : aaaagggttgcaaaaagggggggggttccccccctgggaaacctcccctccacccttcaa
OVRM1_0061_G05.b :
PTG01_0102_E03.b : ccccggggggggaaaaaaaaaattttttttagttccccccccccccgatattttttttaa
UTR01_0058_F08.b : tcctttttccggggcccact
20101001C-007140 : ............................................................
---------+---------+---------+---------+---------+---------+ 1000
OVRM1_0082_H02.b :
HTMT1_0149_D11.b : ccccgaaagaaacaataggggttattggaggggtaataaaaaaagaaaacacaacttttc
OVRM1_0061_G05.b :
PTG01_0102_E03.b : taaagtgtgttaaaaaaaaaggggggggtgccccccccggggaagaaataattttttttt
UTR01_0058_F08.b :
20101001C-007140 : ............................................................
---------+---------+---------+---------+---------+---------+ 1000
OVRM1_0082_H02.b :
HTMT1_0149_D11.b : cttga
OVRM1_0061_G05.b :
PTG01_0102_E03.b : ttctttttttctcaccccagaagaaaaaaaaaaaaggtttttgtttttggggggcataaa
UTR01_0058_F08.b :
20101001C-007140 : ............................................................
---------+---------+---------+---------+---------+---------+ 1000
OVRM1_0082_H02.b :
HTMT1_0149_D11.b :
OVRM1_0061_G05.b :
PTG01_0102_E03.b : aaaaaaaagaaaaaaccccc
UTR01_0058_F08.b :