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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20101001C-014019

Length: 1,283

Sequence:  [FASTA format sequence]
GCAGTGCGCA GGCGCGAGCG TTCGGGACCC GCGGCGCGCG GCGCTCGGTT GTAGCAGGAG
TGAGTTCCTG GGCGCAGAGA CCCGGCAGTG GGCTGTTGAG CGAGCGGGTG ACCCGGCGCC
TCCTCTGCAG CCATGGCAGC TCTGCGCTAC GCGGGCCTGG ACGACACGGA CAGCGAGGAC
GAGCTGCCGC CGGGCTGGGA GCAGAGAACC ACCAAGGACG GCTGGGTTTA CTATGCCAAT
CACACGGAGG AGAAGACGCA ATGGGAACAT CCGAAAACTG GGAAAAGAAA GCGAATAGCA
GGAGATTTGC CCTATGGATG GGAGCAAGAA ACCGATGAGA AAGGACAAGT GTTTTTTGTC
GACCACATAA ATAAGAGAAC GACCTACTTG GACCCAAGAC TGGCATTTAC CGTGGACGAA
AATCCTACGA AACCGACCAC CAGGCAGCGG TACGACAGCA GCACGACCGC CATGGAAATA
CTCCAGGGCC GGGATTTCAG TGGCAAAGTG GTCGTGGTGA CGGGCGCCAA CTCAGGAATA
GGGTTTGAGA CCGCCAAATC TTTTGCCCTC CATGGAGCAC ACGTGATCCT GGCCTGTAGG
AATATGACGA GAGCCAACGA AGCTGTGTCG CGCATTTTAG GAGAATGGCA CAAAGCCAAG
GTAGAAGCAA TGACCCTGGA CCTCGCTGTG CTCCGTAGCG TGCAGCATTT TGCTCAAGCG
TTCAAGGCCA AGAATGTGTT GCTTCACGTG CTTGTGTGCA ACGCAGCGGT TTTTGCTCTT
CCCTGGAGCC TCACGAAGGA TGGCCTGGAG ACCACCTTCC AGGTCAACCA CCTGGGGCAC
TTCTACCTGG TCCAGCTCCT CCAGGACGTC CTGTGCCGCT CAGCCCCAGC CCGGGTCGTG
GTGGTCTCCT CGGAGTCACA TAGGTTTACA GATATTAACG ACTCTTCAGG AAAGCTCGAC
TTCAGCCGCC TCTCCCCGTC GCACAGCGAC TACTGGGCCA TGCTGGCTTA CAACCGGTCC
AAGCTCTGCA ACATCCTCTT CTCCAACGAG CTGCATCGCC GCCTCTCGCC GCGCGGGGTC
ACGTCCAACG CGGTGCATCC CGGCAACATG ATGTTCTCCT CCCTCCATCG CGGCTGGTGG
GTGTACACGC TGCTCTTTCA CTTGGCCAGA CCCTTCACCA AGTCCATGCA ACAAGGAGCT
GCCCACACCG TCTACTGCGC TGCTGCTCCA GAACTGGAGG GTCTGGGAGG AATGTATTTC
AACAACTGGT GCCGTTGTAT GCC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

---

Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20101001C-014019 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRT1_0023_G02.b :            nntttacgtttgctgacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0018_H02.b : gcatttcgtgccnxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SPL01_0056_G11.b :                                                             
OVRT1_0114_C03.b :                                                             


20101001C-014019 : .......................GCAGTGCGCAGGCGCGAGCGTTCGGGACCCGCGGCGC
                   ---------+---------+---------+---------+---------+---------+ 37
OVRT1_0023_G02.b : xxxxxxxxxxxxxxxxxxxxxxxGCAGTGCGCAGGCGCGAGCGTTCGGGACCCGCGGCGC
LVR01_0018_H02.b : xxxxxxxxxxxxxxxxxxxxxxxxxxGTGCGCAGGCGCGAGCGTTCGGGACCCGCGGCGC
SPL01_0056_G11.b :       nggcgataggacttaaacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRT1_0114_C03.b :                                                             


20101001C-014019 : GCGGCGCTCGGTTGTAGCAGGAGTGAGTTCCTGGGCGCAGAGACCCGGCAGTGGGCTGTT
                   ---------+---------+---------+---------+---------+---------+ 97
OVRT1_0023_G02.b : GCGGCGCTCGGTTGTAGCAGGAGTGAGTTCCTGGGCGCAGAGACCCGGCAGTGGGCTGTT
LVR01_0018_H02.b : GCGGCGCTCGGTTGTAGCAGGAGTGAGTTCCTGGGCGCAGAGACCCGGCAGTGGGCTGTT
SPL01_0056_G11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxgttcctggactcagagacacaacactGGCTGTT
OVRT1_0114_C03.b :                                                             


20101001C-014019 : GAGCGAGCGGGTGACCCGGCGCCTCCTCTGCAGCCATGGCAGCTCTGCGCTACGCGGGCC
                   ---------+---------+---------+---------+---------+---------+ 157
OVRT1_0023_G02.b : GAGCGAGCGGGTGACCCGGCGCCTCCTCTGCAGCCATGGCAGCTCTGCGCTACGCGGGCC
LVR01_0018_H02.b : GAGCGAGCGGGTGACCCGGCGCCTCCTCTGCAGCCATGGCAGCTCTGCGCTACGCGGGCC
SPL01_0056_G11.b : GAGCCAGCAGGTGACCCGGCACCTCCTCTGCAAGCATGGCAGCTCTGCGCTACCCGGGCC
OVRT1_0114_C03.b :                                                             


20101001C-014019 : TGGACGACACGGACAGCGAGGACGAGCTGCCGCCGGGCTGGGAGCAGAGAACCACCAAGG
                   ---------+---------+---------+---------+---------+---------+ 217
OVRT1_0023_G02.b : TGGACGACACGGACAGCGAGGACGAGCTGCCGCCGGGCTGGGAGCAGAGAACCACCAAGG
LVR01_0018_H02.b : TGGACGACACGGACAGCGAGGACGAGCTGCCGCCGGGCTGGGAGCAGAGAACCACCAAGG
SPL01_0056_G11.b : TGGACGACACGAACTGCGAGGACGAGCTGCCGCCGGGCTGGGAGCAGATAACCACCAAAG
OVRT1_0114_C03.b :                                                             


20101001C-014019 : ACGGCTGGGTTTACTATGCCAATCACACGG*AGGAGAAGACGCAATGGGAACATCCGAAA
                   ---------+---------+---------+---------+---------+---------+ 276
OVRT1_0023_G02.b : ACGGCTGGGTTTACTATGCCAATCACACGG*AGGAGAAGACGCAATGGGAACATCCGAAA
LVR01_0018_H02.b : ACGGCTGGGTTTACTATGCCAATCACACGG*AGGAGAAGACGCAATGGGAACATCCGAAA
SPL01_0056_G11.b : ACGGCTGGGTTTACTATGCCAATCACACGGCAGGAGAAGACGCAGTGGGAACATCCGAAA
OVRT1_0114_C03.b :                                                             


20101001C-014019 : ACTGGGAAAAGAAAGCGAATAGCAGGAGATTTGCCCTATGGATGGGAGCAAGAAACCGAT
                   ---------+---------+---------+---------+---------+---------+ 336
OVRT1_0023_G02.b : ACTGGGAAAAGAAAGCGAATAGCAGGAGATTTGCCCTATGGATGGGAGCAAGAAACCGAT
LVR01_0018_H02.b : ACTGGGAAAAGAAAGCGAATAGCAGGAGATTTGCCCTATGGATGGGAGCAAGAAACCGAT
SPL01_0056_G11.b : ACTGGGAAAAGAAAGCGAATAGCACGAGATTTGCCCTATGGATGGGAGCAAGAAACCGAT
OVRT1_0114_C03.b :                                                             


20101001C-014019 : GAGAAAGGACAAGTGTTTTTTGTCGACCACATAAATAAGAGAACGACCTACTTGGACCCA
                   ---------+---------+---------+---------+---------+---------+ 396
OVRT1_0023_G02.b : GAGAAAGGACAAGTGTTTTTTGTCGACCACATAAATAAGAGAACGACCTACTTGGACCCA
LVR01_0018_H02.b : GAGAAAGGACAAGTGTTTTTTGTCGACCACATAAATAAGAGAACGACCTACTTGGACCCA
SPL01_0056_G11.b : GAGAAAGGACAAGTGTTTTTTGTCGACCACATAAATAAGAGAACGACCTACTTGGACCCA
OVRT1_0114_C03.b :                                    nnnnnccgtcagcgnacgxxxxxxx


20101001C-014019 : AGACTGGCATTTACCGTGGACGAAAATCCTACGAAACCGACCACCAGGCAGCGGTACGAC
                   ---------+---------+---------+---------+---------+---------+ 456
OVRT1_0023_G02.b : AGACTGGCATTTACCGTGGACGAAAATCCTACGAAACCGACCACCAGGCAGCGGTACGAC
LVR01_0018_H02.b : AGACTGGCATTTACCGTGGACGAAAATCCTACGAAACCGACCACCAGGCAGCGGTACGAC
SPL01_0056_G11.b : AGACTGGCATTTACCGTGGACGAAAATCCTACGAAACCGACCACCAGGCAGCGGTACGAC
OVRT1_0114_C03.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxaactgtgtctggttga


20101001C-014019 : AGCAGCACGACCGCCATGGAAATACTCCAGGGCCGGGATTTCAGTGGCAAAGTGGTCGTG
                   ---------+---------+---------+---------+---------+---------+ 516
OVRT1_0023_G02.b : AGCAGCACGACCGCCATGGAAATACTCCAGGGCCGGGATTTCAGTGGCAAAGTGGTCGTG
LVR01_0018_H02.b : AGCAGCACGACCGCCATGGAAATACTCCAGGGCCGGGATTTCAGTGGCAAAGTGGTCGTG
SPL01_0056_G11.b : AGCAGCACGACCGCCATGGAAATACTCCAGGGCCGGGATTTCAGTGGCAAAGTGGTCGTG
OVRT1_0114_C03.b : gaaccactggggtaatgtgtatggtgcttgataaaggccggctttgcagttgtgtttctg


20101001C-014019 : GTGACGGGCGCCAACTCAGGAATAGGGTTTGAGACCGCCAAATCTTTTGCCCTCCATGGA
                   ---------+---------+---------+---------+---------+---------+ 576
OVRT1_0023_G02.b : GTGACGGGCGCCAACTCAGGAATAGGGTTTGAGACCGCCAAATCTTTTGCCCTCCATGGA
LVR01_0018_H02.b : GTGACGGGCGCCAACTCAGGAATAGGGTTTGAGGCCGCCAAATCTTTTGCCCTCCATGGA
SPL01_0056_G11.b : GTGACGGGCGCCAACTCAGGAATAGGGTTTGAGACCGCCAAATCTTTTGCCCTCCATGGA
OVRT1_0114_C03.b : atgtcgactttccttgtcactgTAGGGTTTGAGACCGCCAAATCTTTTGCCCTCCATGGA


20101001C-014019 : GCACACGTGATCCTGGCCTGTAGGAATATGACGAGAGCCAACGAAGCTGTGTCGCGCATT
                   ---------+---------+---------+---------+---------+---------+ 636
OVRT1_0023_G02.b : GCACACGTGATCCTGGCCTGTAGGAATATGACGAGAGCCAACGAAGCTGTGTCGCGCATT
LVR01_0018_H02.b : GCACACGTGATCCTGGCCTGTAGGAATATGACGAGAGCCAACGAAGCTGTGTCGCGCATT
SPL01_0056_G11.b : GCACACGTGATCCTGGCCTGTAGGAATATGACGAGAGCCAACGAAGCTGTGTCGCGCATT
OVRT1_0114_C03.b : GCACACGTGATCCTGGCCTGTAGGAATATGACGAGAGCCAACGAAGCTGTGTCGCGCATT


20101001C-014019 : TTAGGAGAATGGCACAAAGCCAAGGTAGAAGCAATGACCCTGGACCTCGCTGTGCTCCGT
                   ---------+---------+---------+---------+---------+---------+ 696
OVRT1_0023_G02.b : TTAGGAGAATGGCACAAAGCCAAGGTAGAAGCAATGACCCTGGACCTCGCTGTGCTCCGT
LVR01_0018_H02.b : TTAGGAGAATGGCACAAAGCCAAGGTAGAAGCAATGACCCTGGACCTCGCTGTGCTCCGT
SPL01_0056_G11.b : TTACGAGAATGGCACAAAGCCAAGGTAGAAGCAATGACCCTGGACCTCGCTGTGCTCCGT
OVRT1_0114_C03.b : TTAGGAGAATGGCACAAAGCCAAGGTAGAAGCAATGACCCTGGACCTCGCTGTGCTCCGT


20101001C-014019 : AGCGTGCAGCATTTTGCTCAAGCGTTCAAGGCCAAGAATGTGTTGCTTCACGTGCTTGTG
                   ---------+---------+---------+---------+---------+---------+ 756
OVRT1_0023_G02.b : AGCGTGCAGCATTTTGCTCAAGCGTTCAAGGCCAAGAATGTGTTGCTTCACGTGCTTGTG
LVR01_0018_H02.b : AGCGTGCAGCATTTTGCTCAAGCGTTCAAGGCCAAGAATGTGTTGCTTCACGTGCTTGTG
SPL01_0056_G11.b : AGCGTGCCACATTTTGCTCAAGCGTTCAAGGCCAAGAATGTGTTGCTTCACGTGCTTGTG
OVRT1_0114_C03.b : AGCGTGCAGCATTTTGCTCAAGCGTTCAAGGCCAAGAATGTGTTGCTTCACGTGCTTGTG


20101001C-014019 : TGCAACGCAGCGGTTTTTGCTCTT*CCCTGGAGCCTCACGAAGGATGGCCTGGAGACCAC
                   ---------+---------+---------+---------+---------+---------+ 815
OVRT1_0023_G02.b : TGCAACGCAGCGGTTTTTGCTCTT*CCCTGGAGCCTCACGAAGGATGGCCTGGANGACAC
LVR01_0018_H02.b : TGCAACGCAGCGGTTTTTGCTCTTCCCCTGGAGCCTCACGAAGGATGGCCTGGAGACCAC
SPL01_0056_G11.b : TGCAACGCACCGGTTTTTGCTCTT*CCCTGGAGCCCCCCGAAAGAAGGCCTGGAGACCAC
OVRT1_0114_C03.b : TGCAACGCAGCGGTTTTTGCTCTT*CCCTGGAGCCTCACGAAGGATGGCCTGGAGACCAC


20101001C-014019 : CTTCCAGGTCAACCACCTGGGGCACTTCTACCTGGTCCAGCTCCTCCAGGACGTCCTGTG
                   ---------+---------+---------+---------+---------+---------+ 875
OVRT1_0023_G02.b : CTTCCAGGTCAACCACCTGGGGCACTTCTACCTGGTcagctcctcccagacgtcctgtgc
LVR01_0018_H02.b : CTTCCAGGTCAACCACCTGGGGCACTTCTACCTGGTtcagcttctccaggacgtcctgtg
SPL01_0056_G11.b : CTTCCAGGgtcaaccacctgggggcacttcctacctggttccagcttccccaaggaaggt
OVRT1_0114_C03.b : CTTCCAGGTCAACCACCTGGGGCACTTCTACCTGGTCCAGCTCCTCCAGGACGTCCTGTG


20101001C-014019 : CCGCTCAGCCCCAGCCCGGGTCGTGGTGGTCTCCTCGGAGTCACATAGGTTTACAGATAT
                   ---------+---------+---------+---------+---------+---------+ 935
OVRT1_0023_G02.b : cgctcaagcccagcccgggtcgtggtggtctcctccgagtcccctaggttaacagatatt
LVR01_0018_H02.b : ccgctcagccccagcccgggtcgtgggtggtctccctcgaatcccataggtttacagaat
SPL01_0056_G11.b : cctgtgccgcttcagccccagacccggatcctgggggggtcccctccggaaatcccatag
OVRT1_0114_C03.b : CCGCTCAGCCCCAGCCCGGGTCGTGGTGGTCTCCTCGGAGTCACATAGGTTTACAGATAT


20101001C-014019 : TAACGACTCTTCAGGAAAGCTCGACTTCAGCCGCCTCTCCCCGTCGCACAGCGACTACTG
                   ---------+---------+---------+---------+---------+---------+ 995
OVRT1_0023_G02.b : nacgactcttcaagaaagctcgacttcaagccgctttccccgtccaaaggaactactggc
LVR01_0018_H02.b : ttaacgactcttccggaaaagctcgactttcggccgcctcctccccggtcgccccaccca
SPL01_0056_G11.b : gttttaccgaaattttaaacgacccccttccgggaaaaaccttcaactttctagcccgcc
OVRT1_0114_C03.b : TAACGACTCTTCAGGAAAGCTCGACTTCAGCCGCCTCTCCCCGTCGCACAGCGACTACTG


20101001C-014019 : GGCCATGCTGGCTTACAACCGGTCCAAGCTCTGCAACATCCTCTTCTCCAACGAGCTGCA
                   ---------+---------+---------+---------+---------+---------+ 1055
OVRT1_0023_G02.b : catggtggtttaaaccggttcaagttttgaaattcttttctcaangaagtgaatcccgcc
LVR01_0018_H02.b : ccacctgggcccatgctgggctttaaaaccgggtcccaagcttctggcaaaattccctct
SPL01_0056_G11.b : ttcttcccccggttggtataaagcgacctaactgggggcccttgtcctgtgcctttaaca
OVRT1_0114_C03.b : GGCCATGCTGGCTTACAACCGGTCCAAGCTCTGCAACATCCTCTTCTCCAACGAGCTGCA


20101001C-014019 : TCGCCGCCTCTCGCCGCGCGGGGTCACGTCCAACGCGGTGCATCCCGGCAACATGATGTT
                   ---------+---------+---------+---------+---------+---------+ 1115
OVRT1_0023_G02.b : tttccccgggggggtcacgtccaagcgtggatcccgcaacatgtgtttcctcccccctcc
LVR01_0018_H02.b : ttttcccaaaaaaaagtttgcattccgccccccctttttctccccgccccgggg     
SPL01_0056_G11.b : acccgcgtgtcctaaagacttctttggcaaatattctcctctctttctccccaaaaagaa
OVRT1_0114_C03.b : TCGCCGCCTCTCGCCGCGCGGGGTCACGTCCAACGCGGTGCATCCCGGCAACATGATGTT


20101001C-014019 : CTCCTCCCTCCATCGCGGCTGGTGGGTGTACACGCTGCTCTTTCACTTGGCCAGACCCTT
                   ---------+---------+---------+---------+---------+---------+ 1175
OVRT1_0023_G02.b : cggtggggggtgacacctgttcttccttggccaaccttccaagtcttgaaaaggggtgtc
LVR01_0018_H02.b :                                                             
SPL01_0056_G11.b : aactgtgtctattctctcccccn                                    
OVRT1_0114_C03.b : CTCCTCCCTCCATCGCGGCTGGTGGGTGTACACGCTGCTCTTTCACTTGGCCAGACCCTT


20101001C-014019 : CACCAAGTCCATGCAACAAGGAGCTGCCCACACCGTCTACTGCGCTGCTGCTCCAGAACT
                   ---------+---------+---------+---------+---------+---------+ 1235
OVRT1_0023_G02.b : ccccctttatggctggttccaaaagggggggggggaaagattttaaaggttctttgttcc
LVR01_0018_H02.b :                                                             
SPL01_0056_G11.b :                                                             
OVRT1_0114_C03.b : CACCAAGTCCATGCAACAAGGAGCTGCCCACACCGTCTACTGCGCTGCTGCTCCAGAACT


20101001C-014019 : GGAGGGTCTGGGAGGAATGTATTTCAACAACTGGTGCCGTTGTATGCC............
                   ---------+---------+---------+---------+---------+---------+ 1283
OVRT1_0023_G02.b : ccagaaacaaaaaaaaagcccggcgtgggccccagaagtttaaagggcctcccctccaat
LVR01_0018_H02.b :                                                             
SPL01_0056_G11.b :                                                             
OVRT1_0114_C03.b : GGAGGGTCTGGGAGGAATGTATTTCAACAACTGGTGCCGTTGTATGCCctccaccgaagc


20101001C-014019 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1283
OVRT1_0023_G02.b : gggccccagattacacccggttg                                    
LVR01_0018_H02.b :                                                             
SPL01_0056_G11.b :                                                             
OVRT1_0114_C03.b : tcaaagcgaagagacggcccgggccctgtgggcactcaccgagaagttgatacaagaggg


20101001C-014019 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1283
OVRT1_0023_G02.b :                                                             
LVR01_0018_H02.b :                                                             
SPL01_0056_G11.b :                                                             
OVRT1_0114_C03.b : ccttggcagctcatccggctaagtggggcatcggcaaggattggcccccccccgcccgtg


20101001C-014019 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1283
OVRT1_0023_G02.b :                                                             
LVR01_0018_H02.b :                                                             
SPL01_0056_G11.b :                                                             
OVRT1_0114_C03.b : tgcgtgcttgttgtaaatgccaaccctggacctttcccattactttcgggggcttccagt


20101001C-014019 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1283
OVRT1_0023_G02.b :                                                             
LVR01_0018_H02.b :                                                             
SPL01_0056_G11.b :                                                             
OVRT1_0114_C03.b : cccctgatccggtttccgagcagggactaaattttccaaccaaccaatttgaattcaatg


20101001C-014019 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1283
OVRT1_0023_G02.b :                                                             
LVR01_0018_H02.b :                                                             
SPL01_0056_G11.b :                                                             
OVRT1_0114_C03.b : ggaccgggattctggggtaggaatcctctttcggggggggtaaggtgggtcccccccctg


20101001C-014019 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1283
OVRT1_0023_G02.b :                                                             
LVR01_0018_H02.b :                                                             
SPL01_0056_G11.b :                                                             
OVRT1_0114_C03.b : ggggggggttaaagaaccatattacgggttttttcttttaaaacaaaatttctttgttta


20101001C-014019 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1283
OVRT1_0023_G02.b :                                                             
LVR01_0018_H02.b :                                                             
SPL01_0056_G11.b :                                                             
OVRT1_0114_C03.b : aaacgggtttggccccaccccccacccccggggggaagaaagttgttttttgaaaagagt


20101001C-014019 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1283
OVRT1_0023_G02.b :                                                             
LVR01_0018_H02.b :                                                             
SPL01_0056_G11.b :                                                             
OVRT1_0114_C03.b : ttttttgccaaaaattttttctccccggggggggaaagctctctggggggggggaaaaaa


20101001C-014019 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1283
OVRT1_0023_G02.b :                                                             
LVR01_0018_H02.b :                                                             
SPL01_0056_G11.b :                                                             
OVRT1_0114_C03.b : aagngcnnnnnntaatttcttcatctctccaaggggtgt