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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-002643

Length: 948

Sequence [FASTA format sequence]
GTCTTGGAAG ACAAGGCATT TCATCACCTC GTGCTATTGT CTTTCAGCAA CCGCGCAAGA
AGGTGGTCTG GGCGGCACAG CCTTGAGGAG CCACAAGCCA TGACACGCTT CTTCTATGCC
TGCCTGCTGG CTATCTTCCC AGTGGTCTCC ATGAAGAGTC CCATATTCGG TCCCCAGGAT
GTGAGCAGCG TGGAAGGCAG CTCGGTGTCC ATCAGATGCT ACTACCCAGC CACCTCCGTC
AACCGGCATT CTCGGAAGTA CTGGTGCCGA ATAGGAGCCA AGGGCCGCTG CACAACCCTC
ATCTCCTCGG AGGGCTACAT CTCCAAGGAC TACAAGGGCA GAGCCAACCT CACCAACTTC
CCAGAGAACG GCACCTTCGT GATGGACATT GGCCACCTGA CCCGCGGTGA CTCTGGGCTC
TACAAGTGTG GTCTGGGCAT TAGCAGCCGA GGCCTGTCTT TTGACGTGAG CCTGGAGGTC
AGCCAAGGTC CTGGACAGAT AGGTGATGTC CACGTCTACA CAGCAGACCT GGGCAGCACA
GTAACCATCA ACTGCCCTTT CAAGTCTGAG AATGCTCAGA AGCCGAAATC CGTGTACAAG
AAACTGGGCC AGATCCGCGT CCTGGTCATC GACTCCAATG GGTATTTGAA CAACAACTTT
ACCAACAGAG CACATCTCAG TATTCAGGGT ACCAACCAAT TAGTATTCAG CTTTGTCATC
AACCGAATCC AGCTCCGCGA TGCTGGGATA TACATCTGCC AGGCTGGGGA TGAAGAGAGC
AGCGCTGACC TCCAAGTGCT GAAGCCCGAG CCTGAGCTGA TTTATGGAGA CCTGAGGGGC
TCGGTGACAT TTGACTGCGC CCTGGGCCAG GAGATGGCAA ATGTGGCCAA ATTTCTGTGC
CAGCTAAAAA ATGGGAAAAC CTGCAATGTG GTCATCAACA CCCTGGGG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPIGRpolymeric immunoglobulin receptor precursor [Homo sapiens]. 418e-117O
Contig/Assembly ProteinFCAMRhigh affinity immunoglobulin alpha and immunoglobulin mu Fc receptor isoform b [Homo sapiens]. 96.34e-20
Contig/Assembly ProteinFCAMRhigh affinity immunoglobulin alpha and immunoglobulin mu Fc receptor isoform a [Homo sapiens]. 91.79e-19
Contig/Assembly ProteinFCAMRhigh affinity immunoglobulin alpha and immunoglobulin mu Fc receptor isoform a [Homo sapiens]. 91.79e-19
Contig/Assembly ProteinFAIM3fas apoptotic inhibitory molecule 3 isoform c [Homo sapiens]. 71.61e-12O
Contig/Assembly ProteinFAIM3fas apoptotic inhibitory molecule 3 isoform a [Homo sapiens]. 71.61e-12O
Contig/Assembly ProteinCD300LGCMRF35-like molecule 9 isoform 1 precursor [Homo sapiens]. 61.21e-09O
Contig/Assembly ProteinCD300LGCMRF35-like molecule 9 isoform 4 precursor [Homo sapiens]. 61.21e-09O
Contig/Assembly ProteinCD300LGCMRF35-like molecule 9 isoform 2 precursor [Homo sapiens]. 58.58e-09O
Contig/Assembly ProteinCD300LGCMRF35-like molecule 9 isoform 3 precursor [Homo sapiens]. 57.42e-08O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPigrpolymeric immunoglobulin receptor precursor [Mus musculus]. 3452e-95O
Contig/Assembly ProteinFcamrhigh affinity immunoglobulin alpha and immunoglobulin mu Fc receptor isoform 1 precursor [Mus musculus]. 1086e-24
Contig/Assembly ProteinFcamrhigh affinity immunoglobulin alpha and immunoglobulin mu Fc receptor isoform 2 precursor [Mus musculus]. 1086e-24
Contig/Assembly ProteinCd300lgCMRF35-like molecule 9 isoform 3 [Mus musculus]. 63.23e-10O
Contig/Assembly ProteinCd300lgCMRF35-like molecule 9 isoform 1 [Mus musculus]. 63.23e-10O
Contig/Assembly ProteinCd300lgCMRF35-like molecule 9 isoform 4 [Mus musculus]. 63.23e-10O
Contig/Assembly ProteinCd300lgCMRF35-like molecule 9 isoform 2 [Mus musculus]. 627e-10O
Contig/Assembly ProteinCd300lfCMRF35-like molecule 1 isoform 1 precursor [Mus musculus]. 57.42e-08O
Contig/Assembly ProteinFaim3fas apoptotic inhibitory molecule 3 precursor [Mus musculus]. 57.42e-08O
Contig/Assembly ProteinCd300lfCMRF35-like molecule 1 isoform 2 precursor [Mus musculus]. 572e-08O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPIGRPREDICTED: similar to Polymeric-immunoglobulin receptor precursor (Poly-Ig receptor) (PIGR) [Canis familiaris]. 411e-115O
Contig/Assembly ProteinLOC490267PREDICTED: similar to Fc alpha/mu receptor [Canis familiaris]. 92.84e-19O
Contig/Assembly ProteinLOC490266PREDICTED: similar to Fas apoptotic inhibitory molecule 3 [Canis familiaris]. 68.96e-12O
Contig/Assembly ProteinLOC483297PREDICTED: similar to NK inhibitory receptor precursor [Canis familiaris]. 61.61e-09O
Contig/Assembly ProteinLOC609800PREDICTED: similar to CMRF35-A antigen precursor (CMRF-35) [Canis familiaris]. 59.35e-09O
Contig/Assembly ProteinLOC607203PREDICTED: similar to triggering receptor expressed on myeloid cells 4 [Canis familiaris]. 58.59e-09
Contig/Assembly ProteinLOC483289PREDICTED: similar to CMRF35-H antigen precursor (CMRF35-H9) (CMRF-35-H9) (Inhibitory receptor protein 60) (IRp60) (IRC1/IRC2) (NK inhibitory receptor) [Canis familiaris]. 58.21e-08O
Contig/Assembly ProteinLOC478392PREDICTED: similar to Junctional adhesion molecule B precursor (JAMA-A) (Junctional adhesion molecule 2) (Vascular endothelial junction-associated molecule) (VE-JAM) [Canis familiaris]. 53.53e-07O
Contig/Assembly ProteinLOC608975PREDICTED: similar to triggering receptor expressed on myeloid cells-like 4 [Canis familiaris]. 52.46e-07O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPIGRpolymeric immunoglobulin receptor precursor [Bos taurus]. 426e-119O
Contig/Assembly ProteinLOC100297408PREDICTED: Fas apoptotic inhibitory molecule 3-like [Bos taurus]. 1101e-24
Contig/Assembly ProteinLOC100297408PREDICTED: Fas apoptotic inhibitory molecule 3-like [Bos taurus]. 1101e-24
Contig/Assembly ProteinFAIM3PREDICTED: Fas apoptotic inhibitory molecule 3 [Bos taurus]. 71.21e-12O
Contig/Assembly ProteinFAIM3PREDICTED: Fas apoptotic inhibitory molecule 3-like [Bos taurus]. 71.21e-12O
Contig/Assembly ProteinCD300LGPREDICTED: CD300 molecule-like family member g [Bos taurus]. 61.61e-09O
Contig/Assembly ProteinCD300LGPREDICTED: CD300 molecule-like family member g isoform 1 [Bos taurus]. 61.61e-09O
Contig/Assembly ProteinCD300LGPREDICTED: CD300 molecule-like family member g isoform 2 [Bos taurus]. 56.24e-08O
Contig/Assembly ProteinCD300LDPREDICTED: CD300 molecule-like family member d-like [Bos taurus]. 55.85e-08
Contig/Assembly ProteinCD300LDPREDICTED: immune receptor expressed on myeloid cells splice-like [Bos taurus]. 55.57e-08


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPIGRpolymeric immunoglobulin receptor [Sus scrofa]. 575e-164O
Contig/Assembly ProteinLOC100621497PREDICTED: polymeric immunoglobulin receptor-like, partial [Sus scrofa]. 3107e-85O
Contig/Assembly ProteinLOC100522888PREDICTED: high affinity immunoglobulin alpha and immunoglobulin mu Fc receptor-like [Sus scrofa]. 91.75e-19O
Contig/Assembly ProteinLOC100515852PREDICTED: polymeric immunoglobulin receptor-like [Sus scrofa]. 69.72e-12O
Contig/Assembly ProteinLOC100520045PREDICTED: fas apoptotic inhibitory molecule 3-like [Sus scrofa]. 66.22e-11O
Contig/Assembly ProteinLOC100515853PREDICTED: CMRF35-like molecule 9-like [Sus scrofa]. 55.83e-08O
Contig/Assembly ProteinLOC100621244PREDICTED: junctional adhesion molecule B-like [Sus scrofa]. 50.81e-06O
Contig/Assembly ProteinLOC100622557PREDICTED: CMRF35-like molecule 1-like [Sus scrofa]. 50.12e-06O


Assembly Members: 8      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
CLNT10003H02CLNT1_0003_H02.bFS657312 
CLNT10035F11CLNT1_0035_F11.bFS659815 
CLNT10039D07CLNT1_0039_D07.bFS660111 
CLNT10057A10CLNT1_0057_A10.bFS661528 
CLNT10065D06CLNT1_0065_D06.bFS662170 
CLNT10089D09CLNT1_0089_D09.bFS663481 
CLNT10113B01CLNT1_0113_B01.bHX220128 
ITT010009H12ITT01_0009_H12.bBW976858 AK392828

  

SNPs: 3      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
53A400.500W-
G400.500
117C400.500WSTAC/Y
T400.500TAT/Y
465C400.500WSGAC/D
T400.500GAT/D


Alignment:      TOP

20110601C-002643 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
CLNT1_0057_A10.b : nnnncccttcgcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0065_D06.b : nnccttttgcgnacgagtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0009_H12.b : aagagaaagaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0089_D09.b : nnnttccgtcagcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0113_B01.b : naaaccgttcgctgtggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0039_D07.b : ngttcccgtttgcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0003_H02.b : gattccgttagcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CLNT1_0035_F11.b : gatttcctatagcgnacgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-002643 : .............GTCTTGGAAGACAAGGCATTTCATCACCTCGTGCTATTGTCTTTCAG
---------+---------+---------+---------+---------+---------+ 47
CLNT1_0057_A10.b : xxxxxxxxxxxxxGTCTTGGAAGACAAGGCATTTCATCACCTCGTGCTATTGTCTTTCAG
CLNT1_0065_D06.b : xxxxxxxxxxxxxGTCTTGGAAGACAAGGCATTTCATCACCTCGTGCTATTGTCTTTCAG
ITT01_0009_H12.b : xxxxxxxxxxxxxGTCTTGGAAGACAAGGCATTTCATCACCTCGTGCTATTGTCTTTCAG
CLNT1_0089_D09.b : xxxxxxxxxxxxxGTCTTGGAAGACAAGGCATTTCATCACCTCGTGCTATTGTCTTTCAG
CLNT1_0113_B01.b : xxxxxxxxxxataGTCTTGGAAGACAAGGCATTTCATCACCTCGTGCTATTGTCTTTCAG
CLNT1_0039_D07.b : xxxxxxxxxxxxxGTCTTGGAAGACAAGGCATTTCATCACCTCGTGCTATTGTCTTTCAG
CLNT1_0003_H02.b : xxxxxxxxxxxxxGTCTTGGAAGACAAGGCATTTCATCACCTCGTGCTATTGTCTTTCAG
CLNT1_0035_F11.b : xxxxxxxxxxxxxGTCTTGGAAGACAAGGCATTTCATCACCTCGTGCTATTGTCTTTCAG
20110601C-002643 : CAACCGCGCAAGAAGGTGGTCTGGGCGGCACAGCCTTGAGGAGCCACAAGCCATGACACG
---------+---------+---------+---------+---------+---------+ 107
CLNT1_0057_A10.b : CAACCACGCAAGAAGGTGGTCTGGGCGGCACAGCCTTGAGGAGCCACAAGCCATGACACG
CLNT1_0065_D06.b : CAACCGCGCAAGAAGGTGGTCTGGGCGGCACAGCCTTGAGGAGCCACAAGCCATGACACG
ITT01_0009_H12.b : CAACCACGCAAGAAGGTGGTCTGGGCGGCACAGCCTTGAGGAGCCACAAGCCATGACACG
CLNT1_0089_D09.b : CAACCACGCAAGAAGGTGGTCTGGGCGGCACAGCCTTGAGGAGCCACAAGCCATGACACG
CLNT1_0113_B01.b : CAACCGCGCAAGAAGGTGGTCTGGGCGGCACAGCCTTGAGGAGCCACAAGCCATGACACG
CLNT1_0039_D07.b : CAACCGCGCAAGAAGGTGGTCTGGGCGGCACAGCCTTGAGGAGCCACAAGCCATGACACG
CLNT1_0003_H02.b : CAACCACGCAAGAAGGTGGTCTGGGCGGCACAGCCTTGAGGAGCCACAAGCCATGACACG
CLNT1_0035_F11.b : CAACCGCGCAAGAAGGTGGTCTGGGCGGCACAGCCTTGAGGAGCCACAAGCCATGACACG
20110601C-002643 : CTTCTTCTATGCCTGCCTGCTGGCTATCTTCCCAGTGGTCTCCATGAAGAGTCCCATATT
---------+---------+---------+---------+---------+---------+ 167
CLNT1_0057_A10.b : CTTCTTCTACGCCTGCCTGCTGGCTATCTTCCCAGTGGTCTCCATGAAGAGTCCCATATT
CLNT1_0065_D06.b : CTTCTTCTATGCCTGCCTGCTGGCTATCTTCCCAGTGGTCTCCATGAAGAGTCCCATATT
ITT01_0009_H12.b : CTTCTTCTACGCCTGCCTGCTGGCTATCTTCCCAGTGGTCTCCATGAAGAGTCCCATATT
CLNT1_0089_D09.b : CTTCTTCTACGCCTGCCTGCTGGCTATCTTCCCAGTGGTCTCCATGAAGAGTCCCATATT
CLNT1_0113_B01.b : CTTCTTCTATGCCTGCCTGCTGGCTATCTTCCCAGTGGTCTCCATGAAGAGTCCCATATT
CLNT1_0039_D07.b : CTTCTTCTATGCCTGCCTGCTGGCTATCTTCCCAGTGGTCTCCATGAAGAGTCCCATATT
CLNT1_0003_H02.b : CTTCTTCTACGCCTGCCTGCTGGCTATCTTCCCAGTGGTCTCCATGAAGAGTCCCATATT
CLNT1_0035_F11.b : CTTCTTCTATGCCTGCCTGCTGGCTATCTTCCCAGTGGTCTCCATGAAGAGTCCCATATT
20110601C-002643 : CGGTCCCCAGGATGTGAGCAGCGTGGAAGGCAGCTCGGTGTCCATCAGATGCTACTACCC
---------+---------+---------+---------+---------+---------+ 227
CLNT1_0057_A10.b : CGGTCCCCAGGATGTGAGCAGCGTGGAAGGCAGCTCGGTGTCCATCAGATGCTACTACCC
CLNT1_0065_D06.b : CGGTCCCCAGGATGTGAGCAGCGTGGAAGGCAGCTCGGTGTCCATCAGATGCTACTACCC
ITT01_0009_H12.b : CGGTCCCCAGGATGTGAGCAGCGTGGAAGGCAGCTCGGTGTCCATCAGATGCTACTACCC
CLNT1_0089_D09.b : CGGTCCCCAGGATGTGAGCAGCGTGGAAGGCAGCTCGGTGTCCATCAGATGCTACTACCC
CLNT1_0113_B01.b : CGGTCCCCAGGATGTGAGCAGCGTGGAAGGCAGCTCGGTGTCCATCAGATGCTACTACCC
CLNT1_0039_D07.b : CGGTCCCCAGGATGTGAGCAGCGTGGAAGGCAGCTCGGTGTCCATCAGATGCTACTACCC
CLNT1_0003_H02.b : CGGTCCCCAGGATGTGAGCAGCGTGGAAGGCAGCTCGGTGTCCATCAGATGCTACTACCC
CLNT1_0035_F11.b : CGGTCCCCAGGATGTGAGCAGCGTGGAAGGCAGCTCGGTGTCCATCAGATGCTACTACCC
20110601C-002643 : AGCCACCTCCGTCAACCGGCATTCTCGGAAGTACTGGTGCCGAATAGGAGCCAAGGGCCG
---------+---------+---------+---------+---------+---------+ 287
CLNT1_0057_A10.b : AGCCACCTCCGTCAACCGGCATTCTCGGAAGTACTGGTGCCGAATAGGAGCCAAGGGCCG
CLNT1_0065_D06.b : AGCCACCTCCGTCAACCGGCATTCTCGGAAGTACTGGTGCCGAATAGGAGCCAAGGGCCG
ITT01_0009_H12.b : AGCCACCTCCGTCAACCGGCATTCTCGGAAGTACTGGTGCCGAATAGGAGCCAAGGGCCG
CLNT1_0089_D09.b : AGCCACCTCCGTCAACCGGCATTCTCAGAAGTACTGGTGCCGAATAGGAGCCAAGGGCCG
CLNT1_0113_B01.b : AGCCACCTCCGTCAACCGGCATTCTCGGAAGTACTGGTGCCGAATAGGAGCCAAGGGCCG
CLNT1_0039_D07.b : AGCCACCTCCGTCAACCGGCATTCTCGGAAGTACTGGTGCCGAATAGGAGCCAAGGGCCG
CLNT1_0003_H02.b : AGCCACCTCCGTCAACCGGCATTCTCGGAAGTACTGGTGCCGAATAGGAGCCAAGGGCCG
CLNT1_0035_F11.b : AGCCACCTCCGTCAACCGGCATTCTCGGAAGTACTGGTGCCGAATAGGAGCCAAGGGCCG
20110601C-002643 : CTGCACAACCCTCATCTCCTCGGAGGGCTACATCTCCAAGGACTACAAGGGCAGAGCCAA
---------+---------+---------+---------+---------+---------+ 347
CLNT1_0057_A10.b : CTGCACAACCCTCATCTCCTCGGAGGGCTACATCTCCAAGGACTACAAGGGCAGAGCCAA
CLNT1_0065_D06.b : CTGCACAACCCTCATCTCCTCGGAGGGCTACATCTCCAAGGACTACAAGGGCAGAGCCAA
ITT01_0009_H12.b : CTGCACAACCCTCATCTCCTCGGAGGGCTACATCTCCAAGGACTACAAGGGCAGAGCCAA
CLNT1_0089_D09.b : CTGCACAACCCTCATCTCCTCGGAGGGCTACATCTCCAAGGACTACAAGGGCAGAGCCAA
CLNT1_0113_B01.b : CTGCACAACCCTCATCTCCTCGGAGGGCTACATCTCCAAGGACTACAAGGGCAGAGCCAA
CLNT1_0039_D07.b : CTGCACAACCCTCATCTCCTCGGAGGGCTACATCTCCAAGGACTACAAGGGCAGAGCCAA
CLNT1_0003_H02.b : CTGCACAACCCTCACCTCCTCGGAGGGCTACATCTCCAAGGACTACAAGGGCAGAGCCAA
CLNT1_0035_F11.b : CTGCACAACCCTCATCTCCTCGGAGGGCTACATCTCCAAGGACTACAAGGGCAGAGCCAA
20110601C-002643 : CCTCACCAACTTCCCAGAGAACGGCACCTTCGTGATGGACATTGGCCACCTGACCCGCGG
---------+---------+---------+---------+---------+---------+ 407
CLNT1_0057_A10.b : CCTCACCAACTTCCCAGAGAACGGCACCTTCGTGATGGACATTGGCCACCTGACCCGCGG
CLNT1_0065_D06.b : CCTCACCAACTTCCCAGAGAACGGCACCTTCGTGATGGACATTGGCCACCTGACCCGCGG
ITT01_0009_H12.b : CCTCACCAACTTCCCAGAGAACGGCACCTTCGTGATGGACATTGGCCACCTGACCCGCGG
CLNT1_0089_D09.b : CCTCACCAACTTCCCAGAGAACGGCACCTTCGTGATGGACATTGGCCACCTGACCCGCGG
CLNT1_0113_B01.b : CCTCACCAGCTTCCCAGAGAACGGCACCTTCGTGATGGACATTGGCCACCTGACCCGCGG
CLNT1_0039_D07.b : CCTCACCAACTTCCCAGAGAACGGCACCTTCGTGATGGACATTGGCCACCTGACCCGCGG
CLNT1_0003_H02.b : CCTCACCAACTTCCCAGAGAACGGCACCTTCGTGATGGACATTGGCCACCTGACCCGCGG
CLNT1_0035_F11.b : CCTCACCAACTTCCCAGAGAACGGCACCTTCGTGATGGACATTGGCCACCTGACCCGCGG
20110601C-002643 : TGACTCTGGGCTCTACAAGTGTGGTCTGGGCATTAGCAGCCGAGGCCTGTCTTTTGACGT
---------+---------+---------+---------+---------+---------+ 467
CLNT1_0057_A10.b : TGACTCTGGGCTCTACAAGTGTGGTCTGGGCATTAGCAGCCGAGGCCTGTCTTTTGATGT
CLNT1_0065_D06.b : TGACTCTGGGCTCTACAAGTGTGGTCTGGGCATTAGCAGCCGAGGCCTGTCTTTTGACGT
ITT01_0009_H12.b : TGACTCTGGGCTCTACAAGTGTGGTCTGGGCATTAGCAGCCGAGGCCTGTCTTTTGATGT
CLNT1_0089_D09.b : TGACTCTGGGCTCTACAAGTGTGGTCTGGGCATTAGCAGCCGAGGCCTGTCTTTTGATGT
CLNT1_0113_B01.b : TGACTCTGGGCTCTACAAGTGTGGTCTGGGCATTAGCAGCCGAGGCCTGTCTTTTGACGT
CLNT1_0039_D07.b : TGACTCTGGGCTCTACAAGTGTGGTCTGGGCATTAGCAGCCGAGGCCTGTCTTTTGACGT
CLNT1_0003_H02.b : TGACTCTGGGCTCTACAAGTGTGGTCTGGGCATTAGCAGCCGAGGCCTGTCTTTTGATGT
CLNT1_0035_F11.b : TGACTCTGGGCTCTACAAGTGTGGTCTGGGCATTAGCAGCCGAGGCCTGTCTTTTGACGT
20110601C-002643 : GAGCCTGGAGGTCAGCCAAGGTCCTGGACAGATAGGTGATGTCCACGTCTACACAGCAGA
---------+---------+---------+---------+---------+---------+ 527
CLNT1_0057_A10.b : GAGCCTGGAGGTCAGCCAAGGTCCTGGACAGATAGGTGATGTCCACGTCTACACAGCAGA
CLNT1_0065_D06.b : GAGCCTGGAGGTCAGCCAAGGTCCTGGACAGATAGGTGATGTCCACGTCTACACAGCAGA
ITT01_0009_H12.b : GAGCCTGGAGGTCAGCCAAGGTCCTGGACAGATAGGTGATGTCCACGTCTACACAGCAGA
CLNT1_0089_D09.b : GAGCCTGGAGGTCAGCCAAGGTCCTGGACAGATAGGTGATGTCCACGTCTACACAGCAGA
CLNT1_0113_B01.b : GAGCCTGGAGGTCAGCCAAGGTCCTGGACAGATAGGTGATGTCCACGTCTACACAGCAGA
CLNT1_0039_D07.b : GAGCCTGGAGGTCAGCCAAGGTCCTGGACAGATAGGTGATGTCCACGTCTACACAGCAGA
CLNT1_0003_H02.b : GAGCCTGGAGGTCAGCCAAGGTCCTGGACAGATAGGTGATGTCCACGTCTACACAGCAGA
CLNT1_0035_F11.b : GAGCCTGGAGGTCAGCCAAGGTCCTGGACAGATAGGTGATGTCCACGTCTACACAGCAGA
20110601C-002643 : CCTGGGCAGCACAGTAACCATCAACTGCCCTTTCAAGTCTGAGAATGCTCAGAAGCCGAA
---------+---------+---------+---------+---------+---------+ 587
CLNT1_0057_A10.b : CCTGGGCAGCACAGTAACCATCAACTGCCCTTTCAAGTCTGAGAATGCTCAGAAGCCGAA
CLNT1_0065_D06.b : CCTGGGCAGCACAGTAACCATCAACTGCCCTTTCAAGTCTGAGAATGCTCAGAAGCCGAA
ITT01_0009_H12.b : CCTGGGCAGCACAGTAACCATCAACTGCCCTTTCAAGTCTGAGAATGCTCAGAAGCCGAA
CLNT1_0089_D09.b : CCTGGGCAGCACAGTAACCATCAACTGCCCTTTCAAGTCTGAGAATGCTCAGAAGCCGAA
CLNT1_0113_B01.b : CCTGGGCAGCACAGTAACCATCAACTGCCCTTTCAAGTCTGAGAATGCTCAGAAGCCGAA
CLNT1_0039_D07.b : CCTGGGCAGCACAGTAACCATCAACTGCCCTTTCAAGTCTGAGAATGCTCAGAAGCCGAA
CLNT1_0003_H02.b : CCTGGGCAGCACAGTAACCATCAACTGCCCTTTCAAGTCTGAGAATGCTCAGAAGCCGAA
CLNT1_0035_F11.b : CCTGGGCAGCACAGTAACCATCAACTGCCCTTTCAAGTCTGAGAATGCTCAGAAGCCGAA
20110601C-002643 : ATCCGTGTACAAGAAACTGGGCCAGATCCGCGTCCTGGTCATCGACTCCAATGGGTATTT
---------+---------+---------+---------+---------+---------+ 647
CLNT1_0057_A10.b : ATCCGTGTACAAGAAACTGGGCCAGATCCGCGTCCTGGTCATCGACTCCAATGGGTATTT
CLNT1_0065_D06.b : ATCCGTGTACAAGAAACTGGGCCAGATCCGCGTCCTGGTCATCGACTCCAATGGGTATTT
ITT01_0009_H12.b : ATCCGTGTACAAGAAACTGGGCCAGATCCGCGTCCTGGTCATCGACTCCAATGGGTATTT
CLNT1_0089_D09.b : ATCCGTGTACAAGAAACTGGGCCAGATCCGCGTCCTGGTCATCGACTCCAATGGGTATTT
CLNT1_0113_B01.b : ATCCGTGTACAAGAAACTGGGCCAGATCCGCGTCCTGGTCATCGACTCCAATGGGTATTT
CLNT1_0039_D07.b : ATCCGTGTACAAGAAACTGGGCCAGATCCGCGTCCTGGTCATCGACTCCAATGGGTATTT
CLNT1_0003_H02.b : ATCCGTGTACAAGAAACTGGGCCAGATCCGCGTCCTGGTCATCGACTCCAATGGGTATTT
CLNT1_0035_F11.b : ATCCGTGTACAAGAAACTGGGCCAGATCCGCGTCCTGGTCATCGACTCCAATGGGTATTT
20110601C-002643 : GAACAACAACTTTACCAACAGAGCACATCTCAGTATTCAGGGTACCAACCAATTAGTATT
---------+---------+---------+---------+---------+---------+ 707
CLNT1_0057_A10.b : GAACAACAACTTTACCAACAGAGCACATCTCAGTATTCAGGGTACCAACCAATTAGTATT
CLNT1_0065_D06.b : GAACAACAACTTTACCAACAGAGCACATCTCAGTATTCAGGGTACCAACCAATTAGTATT
ITT01_0009_H12.b : GAACAACAACTTTACCAACAGAGCACATCTCAGTATTCAGGGTACCCACCAATTAGTATT
CLNT1_0089_D09.b : GAACAACAACTTTACCAACAGAGCACATCTCAGTATTCAGGGTACCAACCAATTAGTATT
CLNT1_0113_B01.b : GAACAACAACTTTACCAACAGAGCACATCTCAGTATTCAGGGTACCAACCAATTAGTATT
CLNT1_0039_D07.b : GAACAACAACTTTACCAACAGAGCACATCTCAGTATTCAGGGTACCAACCAATTAGTATT
CLNT1_0003_H02.b : GAACAACAACTTTACCAACAGAGCACATCTCAGTATTCAGGGTACCAACCAATTAGTATT
CLNT1_0035_F11.b : GAACAACAACTTTACCAACAGAGCACATCTCAGTATTCAGGGTACCAACCAATTAGTATT
20110601C-002643 : CAGCTTTGTCATCAACCGAATCCAGCTCCGCGATGCTGGGATATACATCTG*CCAGGCTG
---------+---------+---------+---------+---------+---------+ 766
CLNT1_0057_A10.b : CAGCTTTGTCATCAACCGAATCCAGCTCCGCGATGCTGGGATATACATCTGCCCAGGCTG
CLNT1_0065_D06.b : CAGCTTTGTCATCAACCGAATCCAGCTCCGCGATGCTGGGATATACATCTG*CCAGGCTG
ITT01_0009_H12.b : CAGCTTTGTCATCAACCGAATCCAGCTCCGCGATGCTGGGATATACATCTG*CCAGGCTG
CLNT1_0089_D09.b : CAGCTTTGTCATCAACCGAATCCAGCTCCGCGATGCTGGGATATACATCTG*CCAGGCTG
CLNT1_0113_B01.b : CAGCTTTGTCATCAACCGAATCCAGCTCCGCGATGCTGGGATATACATCTG*CCAGGCTG
CLNT1_0039_D07.b : CAGCTTTGTCATCAACCGAATCCAGCTCCGCGATGCTGGGATATACATCTG*CCAGGCTG
CLNT1_0003_H02.b : CAGCTTTGTCATCAACCGAATCCAGCTCCGCGATGCTGGGATATACATCTG*CCAGGCTG
CLNT1_0035_F11.b : CAGCTTTGTCATCAACCGAATCCAGCTCCGCGATGCTGGGATATACATCTG*CCAGGCTG
20110601C-002643 : GGGATGAAGAGAGCAGCGCTGACCTCCAAGTGCTGAAGCCCGAGCCTGAGCTGATTTATG
---------+---------+---------+---------+---------+---------+ 826
CLNT1_0057_A10.b : GGGATGAAGAGAACAGCCCTGACCTCCAAGTGCTGAAGCCCGAGCCTGAGCTGATTTATG
CLNT1_0065_D06.b : GGGATGATGAGAGCAGCGCTGACCTCCAAGTGCTGAAGCCCGAGCCTGAGCTGATTTTTG
ITT01_0009_H12.b : GGGATGAAGAGAGCAGCGCTGACCTCCCAGTGCTGAAGCCCGAGCCTGAACTGATTTATG
CLNT1_0089_D09.b : GGGATGAAGAGAGCAGCGCTGACCTCCAAGTGCTGAAGCCCGAGCCTGAGCTGATTTATG
CLNT1_0113_B01.b : GGGATGAAGAGAGCAGCGCTGACCTCCAAGTGCTGAAGCCCGAGCCTGAGCTGATTTATG
CLNT1_0039_D07.b : GGGATGAAGAGAGCAGCGCTGACCTCCAAGTGCTGAAGCCCGAGCCTGAGCTGATTTATG
CLNT1_0003_H02.b : GGGATGAAGAGAGCAGCGCTGACCTCCAAGTGCTGAAGCCCGAGCCTGAGCTGATTTATG
CLNT1_0035_F11.b : GGGATGAAGAGAGCAGCGCTGACCTCCAAGTGCTGAAGCCCGAGCCTGAGCTGATTTATG
20110601C-002643 : GAGACCTGAGGGGCTCGGTGACATTTGACTGCGCCCTGGGCCAGGAGATGGCAAATGTGG
---------+---------+---------+---------+---------+---------+ 886
CLNT1_0057_A10.b : GAAACCTGAAGGGCTCGGTGAAATTTGACTGCCCCCTGGGCCAAGAAATGGCAAtggggg
CLNT1_0065_D06.b : GAGACTTGAGGGGCTCGGTGACTTTTGACTGCGCCCTTGGGCAGGAAATGGGCAATGGGG
ITT01_0009_H12.b : GAGACCTGAGGGGCTCGGTGACATTTGACTGCGCCCTGGGGCAGGAAATGGCAAATGTGG
CLNT1_0089_D09.b : GAGACCTGAGGGGCTCGGTGACATTTGACTGCGCCCTGGGGCAGGAGATGGCAAATGTGG
CLNT1_0113_B01.b : GAGACCCTGAGGGGCTCGTGACATTTGACTGCCCCCTGGGCCNAGAGAATGCAAATGT*G
CLNT1_0039_D07.b : GAGACCTGAAGGGCTCGNTGACATTTGACTGCGCCTTGGG*CAAGAGATGGCAAATGTGG
CLNT1_0003_H02.b : GAGACCTGAGGGGCTCGTTGACATTTGACTGCGCCCTGGGCCAGGAGATGGCAAATGTGG
CLNT1_0035_F11.b : GAGACCTGAGGGGCTCGGTGACATTTGACTGCGCCCTGGGCCAGGAGATGGCAAATGTGG
20110601C-002643 : CCAAATTTCTGTGCCAGCTA*AAAAATGGGAAAACCTGCAA*TGTGGTCATCAACACCCT
---------+---------+---------+---------+---------+---------+ 944
CLNT1_0057_A10.b : caaattttcgggccagcttaaaatgggaaaaactgcaaggggtcttcaacccctggggaa
CLNT1_0065_D06.b : CCCAATTTCTGTTGCAGCTA*AAAAtgggaaaacctgcatggggtcatcacaccctgggg
ITT01_0009_H12.b : CCAAATTTCTGTGCCAGCTA*AAAAATGGGAAAACCTGCAA*TGTGGTCATCACCACCCT
CLNT1_0089_D09.b : CCAAATTTCTGGTGCAGCTA*AAA*ATGGGGAAACCTGCAA*TGTGGTCATCAACACCtg
CLNT1_0113_B01.b : CCCAATTTCTGTGCCAGCTA**AAAAATGGAAAACCTGCAA*TGTGGTCATCAACACCCg
CLNT1_0039_D07.b : CCAAATTTCTGTGCCAGCTA*AAAAATGGGAAAACCTGCA**TGTGGTCATCAACACCCT
CLNT1_0003_H02.b : CCAAATTTCTGTGCCAGCTA*AAAAATGGGAAAACCTGCAA*TGTGGTCATCAACACCCT
CLNT1_0035_F11.b : CCAAATTTCTGTNGCAGCTAAAAAAATGGGAAAACCTGCAAATGTGGTCATCAACACCCT
20110601C-002643 : GGGG........................................................
---------+---------+---------+---------+---------+---------+ 948
CLNT1_0057_A10.b : aaaagctcaggattttaaggcaggatccggctccccccagggaaaaagcccttttagggg
CLNT1_0065_D06.b : aaaagggtcaggactttaaggcgggatctgctcactccaagggaaacacccacttagcgt
ITT01_0009_H12.b : GGGGaagaaaggctccagatttttaagggcaggatcctgcctccttccccaagaaaaaaa
CLNT1_0089_D09.b : ggggagaaggctcangacattgagggcaggaatctgctcactcccnaagaaaacagccac
CLNT1_0113_B01.b : ggggagaaaggctcggactttgagggcagatcttgctcatccaaagaaaaaagcccttta
CLNT1_0039_D07.b : Gggaaaaaagctccagactttgaggccagatctgctcactcccaagaaaacagcacatca
CLNT1_0003_H02.b : GGGGaagaaggctcaagaattttgaggcagaatcttgctcattcccagggaaacagcaat
CLNT1_0035_F11.b : GGGGaaaaaagctcaagaacttgaaggcaggatcctgctccctcccaaggaaaaaagccc
20110601C-002643 : ............................................................
---------+---------+---------+---------+---------+---------+ 948
CLNT1_0057_A10.b : caaataccggggttggggaaagaggacccagaaacatctggtggggaccccccctgaggt
CLNT1_0065_D06.b : gacatcacggggtcggaaaaagaaccagaaactacctgggcgggaccacccgaagtgaac
ITT01_0009_H12.b : gcccttttcagcggggaaattcaccggggtttgcgaaaaaaaggaacccaggaaccctaa
CLNT1_0089_D09.b : ttcaacgggcacattcacgggctgcgaaaaaagacccangaaactacctgtgcggagacc
CLNT1_0113_B01.b : ccgtgaaatcccgggctgggaaaaagaaccaggaactacctggcggacccacctaaggta
CLNT1_0039_D07.b : gcgtgccatcccgggctgcgaaaaggacccngaactacctggcggacccacctgagggga
CLNT1_0003_H02.b : ttcagcttgcaatcaccgggttgcgaaagaagaccaagacactaccgtggcggacccaac
CLNT1_0035_F11.b : ttcagcgggcaattaccgggctgcgaaaaagaaaccagaacttcctgtgcggaaccccct
20110601C-002643 : ............................................................
---------+---------+---------+---------+---------+---------+ 948
CLNT1_0057_A10.b : gacctaaggaaggtggccggccaggcttggaaacctttccaaaggaaaacactaatcccc
CLNT1_0065_D06.b : ctaggaaggggggcgtccgagttggaaccttctcaaagaaaatttgattcccccaatcct
ITT01_0009_H12.b : ctgtttgcggaacccacccctggaacggggaaccttaaggaaagggttgggcgcgctcca
CLNT1_0089_D09.b : acctgacgggaagccaaagaaggctggcggtccaggttggcaatccttcatcaatgaaaa
CLNT1_0113_B01.b : aacctaagaaagcgggcggtcagcttgggacctttcaaaaaaaaacatgatccccaaaat
CLNT1_0039_D07.b : gctaaggaggtggcggtccagcttgcactcttctcagaagacttgattccccaaaccccg
CLNT1_0003_H02.b : ctgaggtgacctaaggaaggtgccggttccagcttggcaacccttctcaagaaaaatcta
CLNT1_0035_F11.b : gacgggaactaaggaaggttggcggccaagttggaacctttcacaaggaaaactatgatc
20110601C-002643 : ............................................................
---------+---------+---------+---------+---------+---------+ 948
CLNT1_0057_A10.b : ccaaaatccccgggtgagaagagtgtgggaagactctggggcctggactcccccaacacc
CLNT1_0065_D06.b : ccgggggaaaggggggggagatccctggcctaccgccccacaccaaagaaaaaaacccga
ITT01_0009_H12.b : ggccttgggaaacctcttttcttcaattgaagaaatcttttgtattctctcccagaatac
CLNT1_0089_D09.b : caatgattcccccaaaatactcctgttaaaaaggggggggaagccccgggcctgaactgc
CLNT1_0113_B01.b : ccccgggaaagggggggggagtcctgggcttcaccccctaacccaagaaaaacccctaaa
CLNT1_0039_D07.b : gtggaaggtgggggagttcctgcctaacttcctaaccaaagaaaacactaatatgtccct
CLNT1_0003_H02.b : tgatccccaaaaacctccggggaaaaaggtgggggaaggtcttgggcctaaccggctcta
CLNT1_0035_F11.b : cccccaaatccccgggtaaaagtgtgtggaggtccgtgccgtacctccccttaacccaaa
20110601C-002643 : ............................................................
---------+---------+---------+---------+---------+---------+ 948
CLNT1_0057_A10.b : cgagggaaaataacacgtaaatttgtgtctctgtgagaaagtaaaaacaccccgccc
CLNT1_0065_D06.b : actgggtcctgaaaaaaataaagccctcgccccttgggaaaacgcatgaaaaaaataaga
ITT01_0009_H12.b : ctccgtgggggataaaagggtgtgtggg
CLNT1_0089_D09.b : ccctaacccgaaagaaaacaacccgaatattgggtcctggaaaaaatgaaaacccctgcc
CLNT1_0113_B01.b : ttgttccgggaaaaaaaaacgcctccccccgggaaaaccggtataaaaaaaaagggcgtc
CLNT1_0039_D07.b : gaaaaataaccgctgccccctgtgaaccggttttaaacaaagagcccccctaaaaaccag
CLNT1_0003_H02.b : aacccaagaaacaaacccttaaaatgggtcccgggaaaaaaaaaaagcgccttccccacg
CLNT1_0035_F11.b : aaaaaacccctaaaactgtttcccgggaaaaaaaaaaaccccgccccccactggaa
20110601C-002643 : ............................................................
---------+---------+---------+---------+---------+---------+ 948
CLNT1_0057_A10.b :
CLNT1_0065_D06.b : ggcccttttaaaaactaggaatctctttataaacacaaaggaccttttgttgataagatc
ITT01_0009_H12.b :
CLNT1_0089_D09.b : cccctgggaaaaaacggtatataaaaaaaaaaaggccgtctccttaaaaaaccaaaagtc
CLNT1_0113_B01.b : tcttaaaaagaaggtcttgtaataaatccacagggggtctttgtttaaaactccgcggcc
CLNT1_0039_D07.b : agctttgataacatcccggagcttttgttaacaatcctggccaaatgtgtgaaacacccc
CLNT1_0003_H02.b : tggaaaaaccggctttaaaaaaac
CLNT1_0035_F11.b :
20110601C-002643 : ............................................................
---------+---------+---------+---------+---------+---------+ 948
CLNT1_0057_A10.b :
CLNT1_0065_D06.b : tggtggcccataatttgaaaacacccccagacacgtt
ITT01_0009_H12.b :
CLNT1_0089_D09.b : tctcgtc
CLNT1_0113_B01.b : aacaatttgaaaccaccaaaccgggggaacaatccctccctcacgagggggg
CLNT1_0039_D07.b : aagcggggaaacccnnntttnnttttttgtctcccnnnangttttcctcggaaggggaag
CLNT1_0003_H02.b :
CLNT1_0035_F11.b :
20110601C-002643 : ............................................................
---------+---------+---------+---------+---------+---------+ 948
CLNT1_0057_A10.b :
CLNT1_0065_D06.b :
ITT01_0009_H12.b :
CLNT1_0089_D09.b :
CLNT1_0113_B01.b :
CLNT1_0039_D07.b : aaagaggtcgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
CLNT1_0003_H02.b :
CLNT1_0035_F11.b :