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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-004515

Length: 1,135

Sequence [FASTA format sequence]
GCTGCTCACT GCGCCCGCGC TCGCCTCCTT CCCCGCCTTC CACATTTCCC CGGCTCTTCG
GTTTTCGCGG CCACCCCGCA GCCGTCGCCC AGGTGCCATG GCCGCTATGT ACCGCCCCGG
CCTGCGGCTT AGCTGGCATG GGCTGAGCTC CTGGGGCTGG TCATCACGGC GCAGCATCCA
GGCCCTGCGA GTACTCAATG GAGATCTGGG CCAGCTGCCT GCTGGGGTTC GAGACTTTGT
GGAGCGCAGC GCCCGCCTCT GCCAACCAGA GGGCATCCAC ATCTGTGATG GGACTGAGGC
AGAGAACACT GCCACCCTGG CTCTGCTGGA ACAGCAGGGC CTCATCCGAA AGCTCCCCAA
GTACAACAAC TGCTGGCTGG CCCGCACAGA CCCCAAGGAT GTGGCACGAG TAGAAAGCAA
GACGGTGATT GTAACTCCTT CTCAACGGGA CACGGTGCCC CTCCCAGCTG GTGGGGCCCG
TGGGCAGCTG GGCAACTGGA TGTCCCCAGC TGAGTTCCAG CAAGCTGTGG ATGAGAGGTT
TCCAGGCTGC ATGCAGGGCC GAACCATGTA TGTGCTTCCA TTCAGCATGG GTCCTGTGGG
CTCCCCACTA TCCCGCATCG GAGTGCAGCT CACGGACTCA GCCTATGTGG TGGCTAGTAT
GCGGATTATG ACCCGACTGG GGAAACCTGT GCTTCAGGCC CTGGGAGATG GCGACTTCGT
CAAGTGTCTA CACTCCGTGG GCCAACCTCT GACTGGGCAA GGTAAGCACT TGCTCTGCCC
AGGGGAAGAC ACAGGCCTGT GTGCCCTCAG AGGGGACCCC TAATCCTACC CATATTATTG
GTGAGACACC TAATCCCCCA GATCTAGGGC AGCAGCCTGG GCTGGGGGTG AGGCTGCGTT
GGCAGAGCAG CTTTATGCAG ATTGAGAAGA ACTGGAATTC CTGTCGTGGC TCAGTGGTAA
GGAACCTGAC TAGAATCCAT GAGGACGTGA GTTCGATCCC CGACCTCGCT CATTGGGTTA
AGGATCTGGG CGTGCTGTCT CTATGGTATT GGCCGGCAGC TATAGCTCCG ATTTGACCCC
TACCCTGGAA CATCTTTATG CTGCATGTGA GGCCCTAAAA AAAAAAAAAA AAAAG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPCK2phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform 2 precursor [Homo sapiens]. 380e-105O
Contig/Assembly ProteinPCK2phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform 1 precursor [Homo sapiens]. 380e-105O
Contig/Assembly ProteinPCK1phosphoenolpyruvate carboxykinase, cytosolic [GTP] [Homo sapiens]. 2702e-72O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPck2phosphoenolpyruvate carboxykinase [GTP], mitochondrial [Mus musculus]. 365e-101O
Contig/Assembly ProteinPck1phosphoenolpyruvate carboxykinase, cytosolic [GTP] [Mus musculus]. 2648e-71O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC480255PREDICTED: similar to mitochondrial phosphoenolpyruvate carboxykinase 2 isoform 1 precursor isoform 8 [Canis familiaris]. 379e-105O
Contig/Assembly ProteinLOC480255PREDICTED: similar to mitochondrial phosphoenolpyruvate carboxykinase 2 isoform 1 precursor isoform 6 [Canis familiaris]. 377e-105O
Contig/Assembly ProteinLOC480255PREDICTED: similar to mitochondrial phosphoenolpyruvate carboxykinase 2 isoform 1 precursor isoform 5 [Canis familiaris]. 377e-105O
Contig/Assembly ProteinLOC480255PREDICTED: similar to mitochondrial phosphoenolpyruvate carboxykinase 2 isoform 1 precursor isoform 4 [Canis familiaris]. 377e-105O
Contig/Assembly ProteinLOC480255PREDICTED: similar to mitochondrial phosphoenolpyruvate carboxykinase 2 isoform 1 precursor isoform 3 [Canis familiaris]. 377e-105O
Contig/Assembly ProteinLOC480255PREDICTED: similar to mitochondrial phosphoenolpyruvate carboxykinase 2 isoform 1 precursor isoform 2 [Canis familiaris]. 377e-105O
Contig/Assembly ProteinLOC480255PREDICTED: similar to mitochondrial phosphoenolpyruvate carboxykinase 2 isoform 1 precursor isoform 1 [Canis familiaris]. 377e-105O
Contig/Assembly ProteinLOC480255PREDICTED: similar to mitochondrial phosphoenolpyruvate carboxykinase 2 isoform 1 precursor isoform 7 [Canis familiaris]. 377e-104O
Contig/Assembly ProteinPCK1phosphoenolpyruvate carboxykinase, cytosolic [Canis lupus familiaris]. 2671e-71O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPCK2phosphoenolpyruvate carboxykinase [GTP], mitochondrial [Bos taurus]. 385e-107O
Contig/Assembly ProteinPCK2PREDICTED: phosphoenolpyruvate carboxykinase 2 (mitochondrial) [Bos taurus]. 385e-107O
Contig/Assembly ProteinPCK1phosphoenolpyruvate carboxykinase, cytosolic [GTP] [Bos taurus]. 2657e-71O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPCK2phosphoenolpyruvate carboxykinase [GTP], mitochondrial [Sus scrofa]. 400e-112O
Contig/Assembly ProteinPCK1phosphoenolpyruvate carboxykinase, cytosolic [Sus scrofa]. 2646e-71O


Assembly Members: 4      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
KDN010073E07KDN01_0073_E07.bFS676254 
LVRM10039C12LVRM1_0039_C12.bCJ001746 AK394136
LVRM10110E12LVRM1_0110_E12.bBP452136 
LVRM10182G01LVRM1_0182_G01.bCJ005647 AK233595

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
157A020.500MSGGA/G
C110.500GGC/G


Alignment:      TOP

20110601C-004515 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVRM1_0039_C12.b : gagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0182_G01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0110_E12.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
KDN01_0073_E07.b :
20110601C-004515 : GCTGCTCACTGCGCCCGCGCTCGCCTCCTTCCCCGCCTTCCACATTTCCCCGGCTCTTCG
---------+---------+---------+---------+---------+---------+ 60
LVRM1_0039_C12.b : GCTGCTCACTGCGCCCGCGCTCGCCTCCTTCCCCGCCTTCCACATCTCCCCGGCTCTTCG
LVRM1_0182_G01.b : cCTGCTCACTGCGCCCGCGCTCGCCTCCTTCCCCGCCTTCCACATTTCCCCGGCTCTTCG
LVRM1_0110_E12.b : xCTGCTCACTGCGCCCGCGCTCGCCTCCTTCCCCGCCTTCCACATTTCCCCGGCTCTTCG
KDN01_0073_E07.b : nncctgcggtggctctggacTTTCCCCGGCTCTTCG
20110601C-004515 : GTTTTCGCGGCCACCCCGCAGCCGTCGCCCAGGTGCCATGGCCGCTATGTACCGCCCCGG
---------+---------+---------+---------+---------+---------+ 120
LVRM1_0039_C12.b : GTTTTCGCGGCCACCCCGCAGCCGTCGCCCAGGTGCCATGGCCGCTATGTACCGCCCCGG
LVRM1_0182_G01.b : GTTTTCGCGGCCACCCCGCAGCCGTCGCCCAGGTGCCATGGCCGCTATGTACCGCCCCGG
LVRM1_0110_E12.b : GTTTTCGCGGCCACCCCGCAGCCGTCGCCCAGGTGCCATGGCCGCTATGTACCGCCCCGG
KDN01_0073_E07.b : *TTTTCGCGGCCACCCCGCAGCCGTCGCCCAGGTGCCATGGCCGCTATGTACCGCCCCGG
20110601C-004515 : CCTGCGGCTTAGCTGGCATGGGCTGAGCTCCTGGGGCTGGTCATCACGGCGCAGCATCCA
---------+---------+---------+---------+---------+---------+ 180
LVRM1_0039_C12.b : CCTGCGGCTTAGCTGGCATGGGCTGAGCTCCTGGGGCTGGTCATCACGGCGCAGCATCCA
LVRM1_0182_G01.b : CCTGCGGCTTAGCTGGCATGGGCTGAGCTCCTGGGGATGGTCATCACGGCGCAGCATCCA
LVRM1_0110_E12.b : CCTGCGGCTTAGCTGGCATGGGCTGAGCTCCTGGGGATGGTCATCACGGCGCAGCATCCA
KDN01_0073_E07.b : CCTGCGGCTTAGCTGGCATGGGCTGAGCTCCTGGGGCTGGTCATCACGGCGCAGCATCCA
20110601C-004515 : GGCCCTGCGAGTACTCAATGGAGATCTGGGCCAGCTGCCTGCTGGGGTTCGAGACTTTGT
---------+---------+---------+---------+---------+---------+ 240
LVRM1_0039_C12.b : GGCCCTGCGAGTACTCAATGGAGATCTGGACCAGCTGCCTGCTGGGGTTCGAGACTTTGT
LVRM1_0182_G01.b : GGCCCTGCGAGTACTCAATGGAGATCTGGGCCAGCTGCCTGCTGGGGTTCGAGACTTTGT
LVRM1_0110_E12.b : GGCCCTGCGAGTACTCAATGGAGATCTGGGCCAGCTGCCTGCTGGGGTTCGAGACTTTGT
KDN01_0073_E07.b : GGCCCTGCGAGTACTCAATGGAGATCTGGGCCAGCTGCCTGCTGGGGTTCGAGACTTTGT
20110601C-004515 : GGAGCGCAGCGCCCGCCTCTGCCAACCAGAGGGCATCCACATCTGTGATGGGACTGAGGC
---------+---------+---------+---------+---------+---------+ 300
LVRM1_0039_C12.b : GGAGCGCAGCGCCCGCCTCTGCCAACCAGAGGGCATCCACATCTGTGATGGGACTGAGGC
LVRM1_0182_G01.b : GGAGCGCAGCGCCCGCCTCTGCCAACCAGAGGGCATCCACATCTGTGATGGGACTGAGGC
LVRM1_0110_E12.b : GGAGCGCAGCGCCCGCCTCTGCCAACCAGAGGGCATCCACATCTGTGATGGGACTGAGGC
KDN01_0073_E07.b : GGAGCGCAGCGCCCGCCTCTGCCAACCAGAGGGCATCCACATCTGTGATGGGACTGAGGC
20110601C-004515 : AGAGAACACTGCCACCCTGGCTCTGCTGGAACAGCAGGGCCTCATCCGAAAGCTCCCCAA
---------+---------+---------+---------+---------+---------+ 360
LVRM1_0039_C12.b : AGAGAACACTGCCACCCTGGCTCTGCTGGAACAGCAGGGCCTCATCCAAAAGCTCCCCAA
LVRM1_0182_G01.b : AGAGAACACTGCCACCCTGGCTCTGCTGGAACAGCAGGGCCTCATCCGAAAGCTCCCCAA
LVRM1_0110_E12.b : AGAGAACACTGCCACCCTGGCTCTGCTGGAACAGCAGGGCCTCATCCGAAAGCTCCCCAA
KDN01_0073_E07.b : AGAGAACACTGCCACCCTGGCTCTGCTGGAACAGCAGGGCCTCATCCGAAAGCTCCCCAA
20110601C-004515 : GTACAACAACTGCTGGCTGGCCCGCACAGACCCCAAGGATGTGGCACGAGTAGAAAGCAA
---------+---------+---------+---------+---------+---------+ 420
LVRM1_0039_C12.b : GTACAACAACTGCTGGCTGGCCCGCACAGACCCCAAGGATGTGGCACGAGTAGAAAGCAA
LVRM1_0182_G01.b : GTACAACAACTGCTGGCTGGCCCGCACAGACCCCAAGGATGTGGCACGAGTAGAAAGCAA
LVRM1_0110_E12.b : GTACAACAACTGCTGGCTGGCCCGCACAGACCCCAAGGATGTGGCACGAGTAGAAAGCAA
KDN01_0073_E07.b : GTACAACAACTGCTGGCTGGCCCGCACAGACCCCAAGGATGTGGCACGAGTAGAAAGCAA
20110601C-004515 : GACGGTGATTGTAACTCCTTCTCAACGGGACACGGTGCCCCTCCCAGCTGGTGGGGCCCG
---------+---------+---------+---------+---------+---------+ 480
LVRM1_0039_C12.b : GACGGTGATTGTAACTCCTTCTCAACGGGACACGGTGCCCCTCCCAGCTGGTGGGGCCCG
LVRM1_0182_G01.b : GACGGTGATTGTAACTCCTTCTCAACGGGACACGGTGCCCCTCCCAGCTGGTGGGGCCCG
LVRM1_0110_E12.b : GACGGTGATTGTAACTCCTTCTCAACGGGACACGGTGCCCCTCCCAGCTGGTGGGGCCCG
KDN01_0073_E07.b : GACGGTGATTGTAACTCCTTCTCAACGGGACACGGTGCCCCTCCCAGCTGGTGGGGCCCG
20110601C-004515 : TGGGCAGCTGGGCAACTGGATGTCCCCAGCTGAGTTCCAGCAAGCTGTGGATGAGAGGTT
---------+---------+---------+---------+---------+---------+ 540
LVRM1_0039_C12.b : TGGGCAGCTGGGCAACTGGATGTCCCCAGCTGAGTTCCAGCAAGCTGTGGATGAGAGGTT
LVRM1_0182_G01.b : TGGGCAGCTGGGCAACTGGATGTCCCCAGCTGAGTTCCAGCAAGCTGTGGATGAGAGGTT
LVRM1_0110_E12.b : TGGGCAGCTGGGCAACTGGATGTCCCCAGCTGAGTTCCAGCAAGCTGTGGATGAGAGGTT
KDN01_0073_E07.b : TGGGCAGCTGGGCAACTGGATGTCCCCAGCTGAGTTCCAGCAAGCTGTGGATGAGAGGTT
20110601C-004515 : TCCAGGCTGCATGCAGGGCCGAACCATGTATGTGCTTCCATTCAGCATGGGTCCTGTGGG
---------+---------+---------+---------+---------+---------+ 600
LVRM1_0039_C12.b : TCCAGGCTGCATGCAGGGCCGAACCATGTATGTGCTTCCATTCAGCATGGGTCCTGTGGG
LVRM1_0182_G01.b : TCCAGGCTGCATGCAGGGCCGAACCATGTATGTGCTTCCATTCAGCATGGGTCCTGTGGG
LVRM1_0110_E12.b : TCCAGGCTGCATGCAGGGCCGAACCATGTATGTGCTTCCATTCAGCATGGGTCCTGTGGG
KDN01_0073_E07.b : TCCAGGCTGCATGCAGGGCCGAACCATGTATGTGCTTCCATTCAGCATGGGTCCTGTGGG
20110601C-004515 : CTCCCCACTATCCCGCATCGGAGTGCAGCTCACGGACTCAGCCTATGTGGTGGCTAGTAT
---------+---------+---------+---------+---------+---------+ 660
LVRM1_0039_C12.b : CTCCCCACTGTCCCGCATCGGAGTGCAGCTCACGGACTCAGCCTATGTGGTGGCTAGTAT
LVRM1_0182_G01.b : CTCCCCACTGTCCCGCATCGGAGTGCAGCTCAGCGACTCAGCCTATGTGGTGGCTAATAT
LVRM1_0110_E12.b : CTCCCCACTGTCCCGCATCGGAGTGCAGCTCACGGACTCAGCCTATGTGGTGGCTAGTAT
KDN01_0073_E07.b : CTCCCCACTATCCCGCATCGGAGTGCAGCTCACGGACTCAGCCTATGTGGTGGCTAGTAT
20110601C-004515 : GCGGATTATGACCCGACTGGGGAAACCTGTGCTTCAGGCCCTGGGAGATGGCGACTTCGT
---------+---------+---------+---------+---------+---------+ 720
LVRM1_0039_C12.b : GCGGATTATGACCCGACTGGGGAAACCTGTGCTTCAGGCCCTGGGAGATGGCGACTTCGT
LVRM1_0182_G01.b : GCGGATTATGACCCGACTGGGGAAACCTGTGCTTCAGGCCCTGGGAGATGGCGACTTCGT
LVRM1_0110_E12.b : GCGGATTATGACCCGACTGGGGAAACCTGTGCTTCAGGCCCTGGGAGATGGCGACTTCGN
KDN01_0073_E07.b : GCGGATTATGACCCGACTGGGGAAACCTGTGCTTCAGGCCCTGGGAGATGGCGACTTCGT
20110601C-004515 : CAAGTGTCTACACTCCGTGGGCCAACCTCTGACTGGGCAAGGTAAGCACTTGCTCTGCCC
---------+---------+---------+---------+---------+---------+ 780
LVRM1_0039_C12.b : CAAGTGTCTACACTCCGTGG
LVRM1_0182_G01.b : CAgtg
LVRM1_0110_E12.b : TCAGTGTCTACACTCCGTGGgcccac
KDN01_0073_E07.b : CAAGTGTCTACACTCCGTGGGCCAACCTCTGACTGGGCAAGGTAAGCACTTGCTCTGCCC
20110601C-004515 : AGGGGAAGACACAGGCCTGTGTGCCCTCAGAGGGGACCCCTAATCCTACCCATATTATTG
---------+---------+---------+---------+---------+---------+ 840
LVRM1_0039_C12.b :
LVRM1_0182_G01.b :
LVRM1_0110_E12.b :
KDN01_0073_E07.b : AGGGGAAGACACAGGCCTGTGTGCCCTCAGAGGGGACCCCTAATCCTACCCATATTATTG
20110601C-004515 : GTGAGACACCTAATCCCCCAGATCTAGGGCAGCAGCCTGGGCTGGGGGTGAGGCTGCGTT
---------+---------+---------+---------+---------+---------+ 900
LVRM1_0039_C12.b :
LVRM1_0182_G01.b :
LVRM1_0110_E12.b :
KDN01_0073_E07.b : GTGAGACACCTAATCCCCCAGATCTAGGGCAGCAGCCTGGGCTGGGGGTGAGGCTGCGTT
20110601C-004515 : GGCAGAGCAGCTTTATGCAGATTGAGAAGAACTGGAATTCCTGTCGTGGCTCAGTGGTAA
---------+---------+---------+---------+---------+---------+ 960
LVRM1_0039_C12.b :
LVRM1_0182_G01.b :
LVRM1_0110_E12.b :
KDN01_0073_E07.b : GGCAGAGCAGCTTTATGCAGATTGAGAAGAACTggaattcctgtcgtggctcagtggtaa
20110601C-004515 : GGAACCTGACTAGAATCCATGAGGACGTGAGTTCGATCCCCGACCTCGCTCATTGGGTTA
---------+---------+---------+---------+---------+---------+ 1020
LVRM1_0039_C12.b :
LVRM1_0182_G01.b :
LVRM1_0110_E12.b :
KDN01_0073_E07.b : ggaacctgactagaatccatgaggacgtgagttcgatccccgacctcgctcattgggtta
20110601C-004515 : AGGATCTGGGCGTGCTGTCTCTATGGTATTGGCCGGCAGCTATAGCTCCGATTTGACCCC
---------+---------+---------+---------+---------+---------+ 1080
LVRM1_0039_C12.b :
LVRM1_0182_G01.b :
LVRM1_0110_E12.b :
KDN01_0073_E07.b : aggatctgggcgtgctgtctctatggtattggccggcagctatagctccgatttgacccc
20110601C-004515 : TACCCTGGAACATCTTTATGCTGCATGTGAGGCCCTAAAAAAAAAAAAAAAAAAG.....
---------+---------+---------+---------+---------+---------+ 1135
LVRM1_0039_C12.b :
LVRM1_0182_G01.b :
LVRM1_0110_E12.b :
KDN01_0073_E07.b : taccctggaacatctttatgctgcatgtgaggccctaaaaaaaaaaaaaaaaaaGcxxxx
20110601C-004515 : ............................................................
---------+---------+---------+---------+---------+---------+ 1135
LVRM1_0039_C12.b :
LVRM1_0182_G01.b :
LVRM1_0110_E12.b :
KDN01_0073_E07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-004515 : ............................................................
---------+---------+---------+---------+---------+---------+ 1135
LVRM1_0039_C12.b :
LVRM1_0182_G01.b :
LVRM1_0110_E12.b :
KDN01_0073_E07.b : xxxxxxxxxxxxxxxxxxxxxxxxxgtgtgtgtaactgnttattgccccttaagggtaca
20110601C-004515 : ............................................................
---------+---------+---------+---------+---------+---------+ 1135
LVRM1_0039_C12.b :
LVRM1_0182_G01.b :
LVRM1_0110_E12.b :
KDN01_0073_E07.b : aataagcaaacctccaaatcccaaaaaaccctttttccgcgatcaatggtggtggcaacc
20110601C-004515 : ............................................................
---------+---------+---------+---------+---------+---------+ 1135
LVRM1_0039_C12.b :
LVRM1_0182_G01.b :
LVRM1_0110_E12.b :
KDN01_0073_E07.b : cccaggatttaatgttgggatcccggaacagccaataatccctcccntccaccacaaacg
20110601C-004515 : ............................................................
---------+---------+---------+---------+---------+---------+ 1135
LVRM1_0039_C12.b :
LVRM1_0182_G01.b :
LVRM1_0110_E12.b :
KDN01_0073_E07.b : gggcgcggntgggtgggggagtttcctctcagggtatacttttccaaccgggtccgcaaa
20110601C-004515 : ............................................................
---------+---------+---------+---------+---------+---------+ 1135
LVRM1_0039_C12.b :
LVRM1_0182_G01.b :
LVRM1_0110_E12.b :
KDN01_0073_E07.b : attgttaagcccaggccccaaaaccctttg