[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-004532
Length:
1,084
Sequence:
[FASTA format sequence]
TGATTGGAAA GGAAAAGAAA GGTCCAAAGA GGGAAAAAAG GTCCAAAAGG GAAAAAAGAA
GCCTTGAGGG CTGTGCGACT CAACTAATTT TGTCTCCTAC GGGCCCCTGT TGCGGCTTCC
CTTGGCGTCA CCGTCGGCGC GGTTGCGGGG CATCGTGGGT AAGAGCGAGA TTTGGTCTCA
CAACTCCGAA AGATGGCGGA CGCTTTCGGG GATGAGCTCT TCAGCGTGTT TGAGGACGAC
TCGACCACTG CGCCCGGAAC CAAAAAAGAC AAGGAGAAGG AGAAGGGGAA ATGGAAGGGG
CCACCAGGGT CTGCAGAAAA GGCCGGAAAA CATTTTGATG GTAAATTACA AACAGAGTCA
ACTAATATTG GAAAGACCAA GAGAGATGCA GACTTTGAGG GCACAGATGA ACCCATTTTT
GGAAAGAAGC TCAGGGTAGA AGAGTCAATA ACTGAAGACT TAAGTTTGGC AGATTTGATG
CCTAGAGTCA AGGTACAATC AGTTGAAACT GTTGAAGGAT GTACACATGA GGTTGCACTT
CCTGCCGATG AAGATTATCT ACCACTTAAA CCAAGAGTTG GAAAAGCTGC AAAGGAATAC
CCATTCATTC TTGACGCATT TCAAAGAGAA GCCATTCAAT GTGTGGACAA TAATCAGTCT
GTTTTAGTAT CTGCACATAC ATCAGCAGGA AAAACTGTAT GCGCTGAATA TGCCATTGCA
TTGGCCTTAA GGGAAAAACA ACGTGTAATA TTTACTAGCC CAATTAAGGC CCTGAGTAAT
CAGAAATATC GTGAAATGTA TGAAGAATTT CAAGATGTTG GTCTGATGAC TGGAGATGTT
ACTATTAATC CTACAGCATC TTGTCTTGTT ATGACCACAG AGATTTTGAG AAGTATGCTG
TACAGAGGCT CTGAAGTTAT GCGAGAAGTT GCTTGGGTCA TATTTGATGA AATTCCTTAC
ATGAGAGATT CCCAGCCTGG TGTTGTATGC GAAGAAACTA TTATTTTGCC TCCCTGATAC
GTTCCCTACC TCTTTCTTTC CGCTACCATT CCCAATGCCC CACCGTTTGC TGAATGGATT
TGCC
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
SKIV2L2 | superkiller viralicidic activity 2-like 2 [Homo sapiens]. | 509 | e-144 | O | ||
SKIV2L | helicase SKI2W [Homo sapiens]. | 198 | 8e-51 | |||
DDX60 | probable ATP-dependent RNA helicase DDX60 [Homo sapiens]. | 69.3 | 6e-12 | |||
DDX60L | probable ATP-dependent RNA helicase DDX60-like [Homo sapiens]. | 64.3 | 2e-10 | |||
HFM1 | probable ATP-dependent DNA helicase HFM1 [Homo sapiens]. | 61.2 | 2e-09 | |||
SNRNP200 | U5 small nuclear ribonucleoprotein 200 kDa helicase [Homo sapiens]. | 55.8 | 7e-08 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
Skiv2l2 | superkiller viralicidic activity 2-like 2 [Mus musculus]. | 489 | e-138 | O | ||
Skiv2l | superkiller viralicidic activity 2-like [Mus musculus]. | 196 | 2e-50 | |||
Ddx60 | probable ATP-dependent RNA helicase DDX60 [Mus musculus]. | 68.9 | 6e-12 | |||
Hfm1 | HFM1 protein [Mus musculus]. | 63.9 | 2e-10 | |||
Snrnp200 | U5 small nuclear ribonucleoprotein 200 kDa helicase [Mus musculus]. | 55.8 | 6e-08 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC607950 | PREDICTED: similar to Superkiller viralicidic activity 2-like 2 isoform 1 [Canis familiaris]. | 520 | e-147 | O | ||
LOC607950 | PREDICTED: similar to Superkiller viralicidic activity 2-like 2 isoform 3 [Canis familiaris]. | 520 | e-147 | O | ||
LOC607950 | PREDICTED: similar to superkiller viralicidic activity 2-like 2 isoform 2 [Canis familiaris]. | 520 | e-147 | O | ||
LOC481720 | PREDICTED: similar to superkiller viralicidic activity 2-like homolog [Canis familiaris]. | 196 | 2e-50 | |||
LOC475493 | PREDICTED: similar to C28H8.3 [Canis familiaris]. | 74.3 | 2e-13 | |||
LOC479956 | PREDICTED: similar to CG5205-PA [Canis familiaris]. | 63.2 | 4e-10 | |||
LOC475742 | PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 9 [Canis familiaris]. | 55.8 | 7e-08 | |||
LOC475742 | PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 12 [Canis familiaris]. | 55.8 | 7e-08 | |||
LOC475742 | PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 11 [Canis familiaris]. | 55.8 | 7e-08 | |||
LOC475742 | PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 10 [Canis familiaris]. | 55.8 | 7e-08 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
SKIV2L2 | superkiller viralicidic activity 2-like 2 [Bos taurus]. | 512 | e-145 | O | ||
HFM1 | probable ATP-dependent DNA helicase HFM1 [Bos taurus]. | 63.9 | 2e-10 | |||
HFM1 | PREDICTED: mutagen-sensitive 308-like [Bos taurus]. | 63.9 | 2e-10 | |||
SNRNP200 | U5 small nuclear ribonucleoprotein 200 kDa helicase [Bos taurus]. | 57.4 | 2e-08 | |||
SNRNP200 | PREDICTED: activating signal cointegrator 1 complex subunit 3-like 1-like [Bos taurus]. | 57.4 | 2e-08 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
SKIV2L2 | PREDICTED: superkiller viralicidic activity 2-like 2 [Sus scrofa]. | 532 | e-151 | O | ||
SKIV2L | helicase SKI2W [Sus scrofa]. | 197 | 8e-51 | |||
DDX60 | PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX60 [Sus scrofa]. | 70.9 | 1e-12 | |||
HFM1 | PREDICTED: probable ATP-dependent DNA helicase HFM1 [Sus scrofa]. | 64.3 | 1e-10 | |||
LOC100525691 | PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like [Sus scrofa]. | 55.1 | 7e-08 |
|
|
20110601C-004532 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVR01_0063_B05.b : nnnnggcttggactatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PBL01_0019_B09.b :
OVRM1_0002_F10.b :
OVRM1_0112_E04.b :
20110601C-004532 : .....................TGATTGGAAAGGAAAAGAAAGGTCCAAAGAGGGAAAAAA
---------+---------+---------+---------+---------+---------+ 39
OVR01_0063_B05.b : xxxxxxxxxxxxxxxxxxxxxTGATTGGAAAGGAAAAGAAAGGTCCAAAGAGGGAAAAAA
PBL01_0019_B09.b :
OVRM1_0002_F10.b :
OVRM1_0112_E04.b :
20110601C-004532 : GGTCCAAAAGGGAAAAAAGAAGCCTTGAGGGCTGTGCGACTCAACTAATTTTGTCTCCTA
---------+---------+---------+---------+---------+---------+ 99
OVR01_0063_B05.b : GGTCCAAAAGGGAAAAAAGAAGCCTTGAGGGCTGTGCGACTCAACTAATTTTGTCTCCTA
PBL01_0019_B09.b :
OVRM1_0002_F10.b :
OVRM1_0112_E04.b :
20110601C-004532 : CGGGCCCCTGTTGCGGCTTCCCTTGGCGTCACCGTCGGCGCGGTTGCGGGGCATCGTGGG
---------+---------+---------+---------+---------+---------+ 159
OVR01_0063_B05.b : CGGGCCCCTGTTGCGGCTTCCCTTGGCGTCACCGTCGGCGCGGTTGCGGGGCATCGTGGG
PBL01_0019_B09.b : ngtgaagcagctggacggtcccgxxxxxxxxxxxxxxxxxx
OVRM1_0002_F10.b : tagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0112_E04.b : tcagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-004532 : TAAGAGCGAGATTTGGTCTCACAACTCCGAAAGATGGCGGACGCTTTCGGGGATGAGCTC
---------+---------+---------+---------+---------+---------+ 219
OVR01_0063_B05.b : TAAGAGCGAGATTTGGTCTCACAACTCCGAAAGATGGCGGACGCTTTCGGGGATGAGCTC
PBL01_0019_B09.b : xxxxxxxxxGATTTGGTCTCACAACTCCCAAAGATGGCGGACGCTTTCCGGGATGAGCTC
OVRM1_0002_F10.b : xxxxxxxxxxxxxxxxxxxxaCAACTCCGAAAGATGGCGGACGCTTTCGGGGATGAGCTC
OVRM1_0112_E04.b : xxxxxxxxxxxxxxxxxxxxxCAACTCCGAAAGATGGCGGACGCTTTCGGGGATGAGCTC
20110601C-004532 : TTCAGCGTGTTTGAGGACGACTCGACCACTGCGCCCGGAACCAAAAAAGACAAGGAGAAG
---------+---------+---------+---------+---------+---------+ 279
OVR01_0063_B05.b : TTCAGCGTGTTTGAGGACGACTCGACCACTGCGCCCGGAACCAaaaaagacaaggagaag
PBL01_0019_B09.b : TTCAGCGTGTTTGAGGACCACTCGACCACTGCGCCCGGAACCAAAGAAGACAAGGAGAAG
OVRM1_0002_F10.b : TTCAGCGTGTTTGAGGACGACTCGACCACTGCGCCCGGAACCAaaaaagacaaggagaag
OVRM1_0112_E04.b : TTCAGCGTGTTTGAGGACGACTCGACCACTGCGCCCGGAACCAaaaaagacaaggagaag
20110601C-004532 : GAGAAGGGGAAATGGAAGGGGCCACCAGGGTCTGCAGAAAAGGCCGGAAAACATTTTGAT
---------+---------+---------+---------+---------+---------+ 339
OVR01_0063_B05.b : gagaaggggaaatggaaggggCCACCAGGGTCTGCAGAAAAGGCCGGAAAACATTTTGAT
PBL01_0019_B09.b : GAGAAGGGGAAATGGAAGGGGCCACCAGGGTCTGCAGAAAAGGCCAGAAAACATTTTGAT
OVRM1_0002_F10.b : gagaaggggaaatggaaggggCCACCAGGGTCTGCAGAAAAGGCCGGAAAACATTTTGAT
OVRM1_0112_E04.b : gagaaggggaaatggaaggggCCACCAGGGTCTGCAGAAAAGGCCGGAAAACATTTTGAT
20110601C-004532 : GGTAAATTACAAACAGAGTCAACTAATATTGGAAAGACCAAGAGAGATGCAGACTTTGAG
---------+---------+---------+---------+---------+---------+ 399
OVR01_0063_B05.b : GGTAAATTACAAACAGAGTCAACTAATATTGGAAAGACCAAGAGAGATGCAGACTTTGAG
PBL01_0019_B09.b : GGTAAATTACAAACAGAGTCAACTAATATTGGAAAGACCAAGAGAGATGCAGACTTTGAG
OVRM1_0002_F10.b : GGTAAATTACAAACAGAGTCAACTAATATTGGAAAGACCAAGAGAGATGCAGACTTTGAG
OVRM1_0112_E04.b : GGTAAATTACAAACAGAGTCAACTAATATTGGAAAGACCAAGAGAGATGCAGACTTTGAG
20110601C-004532 : GGCACAGATGAACCCATTTTTGGAAAGAAGCTCAGGGTAGAAGAGTCAATAACTGAAGAC
---------+---------+---------+---------+---------+---------+ 459
OVR01_0063_B05.b : GGCACAGATGAACCCATTTTTGGAAAGAAGCTCAGGGTAGAAGAGTCAATAACTGAAGAC
PBL01_0019_B09.b : GGCACAGATGAACCCATTTTTGGAAAGAAGCTCAGGGTAGAAGAGTCAATAACTGAAGAC
OVRM1_0002_F10.b : GGCACAGATGAACCCATTTTTGGAAAGAAGCTCAGGGTAGAAGAGTCAATAACTGAAGAC
OVRM1_0112_E04.b : GGCACAGATGAACCCATTTTTGGAAAGAAGCTCAGGGTAGAAGAGTCAATAACTGAAGAC
20110601C-004532 : TTAAGTTTGGCAGATTTGATGCCTAGAGTCAAGGTACAATCAGTTGAAACTGTTGAAGGA
---------+---------+---------+---------+---------+---------+ 519
OVR01_0063_B05.b : TTAAGTTTGGCAGATTTGATGCCTAGAGTCAAGGTACAATCAGTTGAAACTGTTGAAGGA
PBL01_0019_B09.b : TTAAGTTTGGCAGATTTGATGCCTAGAGTCAAGGTACAATCAGTTGAGACTGTTGAAGGA
OVRM1_0002_F10.b : TTAAGTTTGGCAGATTTGATGCCTAGAGCCAAGGTACAATCAGTTGAAACTGTTGAAGGA
OVRM1_0112_E04.b : TTAAGTTTGGCAGATTTGATGCCTAGAGTCAAGGTACAATCAGTTGAAACTGTTGAAGGA
20110601C-004532 : TGTACACATGAGGTTGCACTTCCTGCCGATGAAGATTATCTACCACTTAAACCAAGAGTT
---------+---------+---------+---------+---------+---------+ 579
OVR01_0063_B05.b : TGTACACATGAGGTTGCACTTCCTGCCGATGAAGATTATCTACCACTTAAACCAAGAGTT
PBL01_0019_B09.b : TGTACACATGAGGTTGCACTTCCTGCCGATGAAGATTATCTACCACTTAAACCAAGAGTT
OVRM1_0002_F10.b : TGTACACATGAGGTTGCACTTCCTGCCGATGAAGATTATCTACCACTTAAACCAAGAGTT
OVRM1_0112_E04.b : TGTACACATGAGGTTGCACTTCCTGCTGATGAAGATTATCTACCACTTAAACCAAGAGTT
20110601C-004532 : GGAAAAGCTGCAAAGGAATACCCATTCATTCTTGACGCATTTCAAAGAGAAGCCATTCAA
---------+---------+---------+---------+---------+---------+ 639
OVR01_0063_B05.b : GGAAAAGCTGCAAAGGAATACCCATTCATTCTTGACGCGTTTCAAAGAGAAGCCATTCAA
PBL01_0019_B09.b : GGAAAAGCTGCAAAGGAATACCCATTCATTCTTGACGCATTTCAAAGAGAAGCCATTCAA
OVRM1_0002_F10.b : GGAAAAGCTGCAAAGGAATACCCATTCATTCTTGACGCATTTCAAAGAGAAGCCATTCAA
OVRM1_0112_E04.b : GGAAAAGCTGCAAAGGAATACCCATTCATTCTTGACGCATTTCAAAGAGAAGCCATTCAA
20110601C-004532 : TGTGTGGACAATAATCAGTCTGTTTTAGTATCTGCACATACATCAGCAGGAAAAACTGTA
---------+---------+---------+---------+---------+---------+ 699
OVR01_0063_B05.b : TGTGTTGACAATAATCAGTCTGTTTTAGTATCTGCACATACATCAGCAGGAAAAACTGTA
PBL01_0019_B09.b : TGTGTGGACAATAATCAGTCTGTTTTAGTATCTGCACATACATCAGCAGGAAAAACTGTA
OVRM1_0002_F10.b : TGTGTTGACAATAATCAGTCTGTTTTAGTATCTGCACATACATCAGCAGGAAAAACTGTA
OVRM1_0112_E04.b : TGTGTGGACAATAATCAGTCTGTTTTAGTATCTGCACATACATCAGCAGGAAAAACTGTA
20110601C-004532 : TGCGCTGAATATGCCATTGCATTGGCCTTAAGGGAAAAACAACGTGTAATATTTACTAGC
---------+---------+---------+---------+---------+---------+ 759
OVR01_0063_B05.b : TGCGCTGAATATGCCATTGCATTGGCCTTAAGGGAAAA*CAACGTGTAATATTTACTAGC
PBL01_0019_B09.b : TGCGCTGAATATGCCATTGCATTGGCCTTAAGGGAAAAACAACGTGTAATATTTACTAGC
OVRM1_0002_F10.b : TGCGCTGAATATGCCATTGCATTGGCCTTAAGGGAAAAACAACGTGTAATATTTACTAGC
OVRM1_0112_E04.b : TGCGCTGAATATGCCATTGCATTGGCCTTAAGGGAAAAACAACGTGTAATATTTACTAGC
20110601C-004532 : CCAATTAAGGCCCTGAGTAATCAGAAATATCGTGAAATGTATGAAGAATTTCAAGATGTT
---------+---------+---------+---------+---------+---------+ 819
OVR01_0063_B05.b : CCAATTAAAGCCCTGAGTTATCAGAAATATCGTGAAATGTATGAAGAATT*CAAGATGTT
PBL01_0019_B09.b : CCAATTAAGGCCCTGAGTAATCAGAAATATCGTGAAATGTATGAAGAATTTCAAGATGTT
OVRM1_0002_F10.b : CCAATTAAGGCCCTGAGTAATCAGAAATATCGTGAAATGTATGAAGAATTTCAAGATGTT
OVRM1_0112_E04.b : CCAATTAAGGCCCTGAGTAATCAGAAATATCGTGAAATGTATGAAGAATTTCAAGATGTT
20110601C-004532 : GGTCTGATGACTGGAGATGTTACTATTAATCCTACAGCATCTTGTCTTGTTATGACCACA
---------+---------+---------+---------+---------+---------+ 879
OVR01_0063_B05.b : GGTCTGATGACTGGAAATGTTACTATAAATCtaccgcatctttgtctgttatgaccacgg
PBL01_0019_B09.b : GGTCTGATGACTGGAGATGTTACTATTAATCCTACAGCATCTTGTCTTTGTATGACCACA
OVRM1_0002_F10.b : GGTCTGATGACTGGAGATGTTACTATTAATCCTACAGCATCTTGTCTTGTTATGACCACA
OVRM1_0112_E04.b : GGTCTGATGACTGGAGATGTTACTATTAATCCTACAGCATCTTGTCTTGTTATGACCACA
20110601C-004532 : GAGATTTTGAGAAGTATGCTGTACAGAGGCTCTGAAGTTATGCGAGAAGTTGCTTGGGTC
---------+---------+---------+---------+---------+---------+ 939
OVR01_0063_B05.b : aaattttgaaaattatgctgtacaaaagcttctgaaattattccaaaaaaattgcttggg
PBL01_0019_B09.b : GAGATTTTGAGAAGTATGCTGTACAGAGGCTCTGAAGTTATGCGAGAAGTTGCTTGGGTC
OVRM1_0002_F10.b : GAGATTTTGAGAAGTATGCTGTACAGAGGCTCTGAAGTTATGCGAGAAGTTGCTTGGGTC
OVRM1_0112_E04.b : GAGATTTTGAGAAGTATGCTGTACAGAGGCTCTGAAGTTATGCGAGAAGTTGCTTGGGTC
20110601C-004532 : ATATTTGATGAAATTCCTTACATGAGAGATTCCCAGCCTGGTGTTGTATGCGAAGAAACT
---------+---------+---------+---------+---------+---------+ 999
OVR01_0063_B05.b : gtcaatatttgatggaaattccttatcatggaaaaattccaaaccgggttggtttttttg
PBL01_0019_B09.b : ATATTTGATGAAATTCCTTACATGAGAGATTCCCAGCCTGGTGTTGTATGCGAAGAAACT
OVRM1_0002_F10.b : ATATTTtgatgaatcattacatgagat
OVRM1_0112_E04.b : ATATTTgatgaat
20110601C-004532 : ATTATTTTGCCTCCCTGATACGTTCCCTACCTCTTTCTTTCCGCTACCATTCCCAATGCC
---------+---------+---------+---------+---------+---------+ 1059
OVR01_0063_B05.b : ggaaagaaactattaattttgctttcctggaaaacgttcacaaacggtcttttttttctg
PBL01_0019_B09.b : ATTATTTTGCCTCCCTGATACGTTCCCTACCTCTTTCTTTCCGCTACCATTCCCAATGCC
OVRM1_0002_F10.b :
OVRM1_0112_E04.b :
20110601C-004532 : CCACCGTTTGCTGAATGGATTTGCC...................................
---------+---------+---------+---------+---------+---------+ 1084
OVR01_0063_B05.b : ggtaaaaattcccaaatgtcccaaacagtttgtcctgaaggggaattgtcccccttaaca
PBL01_0019_B09.b : CCACCGTTTGCTGAATGGATTTGCCccctacctaaaccgccctgtccatgtatttacccc
OVRM1_0002_F10.b :
OVRM1_0112_E04.b :
20110601C-004532 : ............................................................
---------+---------+---------+---------+---------+---------+ 1084
OVR01_0063_B05.b : ataaaccagccc
PBL01_0019_B09.b : cgattatcggcctactccctgccaccctacctttttcccccccggggaaatggcccgccc
OVRM1_0002_F10.b :
OVRM1_0112_E04.b :
20110601C-004532 : ............................................................
---------+---------+---------+---------+---------+---------+ 1084
OVR01_0063_B05.b :
PBL01_0019_B09.b : cctgtaattaatgaaaaggtgacctccaaaaagaaatttttaatcccccgtccagttcct
OVRM1_0002_F10.b :
OVRM1_0112_E04.b :
20110601C-004532 : ............................................................
---------+---------+---------+---------+---------+---------+ 1084
OVR01_0063_B05.b :
PBL01_0019_B09.b : ccaaaagcctgccaatggcccaagggaaatccaaaggcccgaaggggggaaccaaggccc
OVRM1_0002_F10.b :
OVRM1_0112_E04.b :
20110601C-004532 : ............................................................
---------+---------+---------+---------+---------+---------+ 1084
OVR01_0063_B05.b :
PBL01_0019_B09.b : ccccaagtgtttccaaattggtaaatgaatatggaaaaattttccaccccgaattttttt
OVRM1_0002_F10.b :
OVRM1_0112_E04.b :
20110601C-004532 : ............................................................
---------+---------+---------+---------+---------+---------+ 1084
OVR01_0063_B05.b :
PBL01_0019_B09.b : agttttaaaaaaagaatgtaacccttggcccctcaggccccctttattttcccccccgta
OVRM1_0002_F10.b :
OVRM1_0112_E04.b :
20110601C-004532 : ............................................................
---------+---------+---------+---------+---------+---------+ 1084
OVR01_0063_B05.b :
PBL01_0019_B09.b : aaaaagaaatgtttaaagattttccatc
OVRM1_0002_F10.b :
OVRM1_0112_E04.b :