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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-004676

Length: 780

Sequence:  [FASTA format sequence]
GGCGGAGGCC GGAAGTGTTG GATTGTAGCG GCTCTGGTAT TGGAAGCGAG TTAGTAGCGG
CAGCCGAGGC AGCGAGGGGG TACCCGAAGC AATCGGATTC TTGCGGCTGA GCAGGGTGAG
TGGTGCTTGG GGCTCATTCT GGCCGCATAC CCGTGGGGCG GCTGATGAGC AGCGGTGCTT
CCGTGGTACC GGGAGCGCAC CTGGGCAGAT GTACCAGCCG CTTCGTGGGT TTCGAGCCCA
AGGGCCAGCT CCAGTATCAA AAGCCGGGGG CCGGAAACGG CCCAGATGCC AATTTTGCCA
GACTTGGAGG TCAGGAAATG TGGCTTAGCC TGCTGGCGCC GCGAGCTTGG GCGACAGCCG
GCCTGGGAAA CCCGAGCCCC GCGGATCTGA CTCTGGGACT AAGTTTAGTT TCTAACGTAA
ACTTGCCGGA TTCAAGAGTT TGCGCAAAAA CTGTAGCCCA TTGCCTCCCC CCCCACCACT
CCGGCGCACC TCCCCGCTGC AGCTGTTGTT GCAGCTGTGT GGCTACGTTT AGTTGGAATA
ACCACCTCAA ATTAGCATCT TCCTCAGCTC AGTGTCCATT CTGTAATTAG AACTTTGTTT
TAAGTGATAT TTGGGCAAAG GGAGGTTTGG TGTTTAATTT GCGGCTTCAG AAAAATTCCA
TAATACACCA CCACATTCCT TTTGGGTGGA GACTTGGGGT TATATCAGTT TCCCAAAGTG
TTTCTTTTTA TAGTAGTTGA ATTGGTTTAT CAAAGAGTAT GTCAGTTCTT TACAGAACTT

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100522081	PREDICTED: hypothetical protein LOC100522081 [Sus scrofa].	301	2e-82	O

Alignment:      TOP

20110601C-004676 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
LVRM1_0074_A01.b :                      cgttgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0095_E10.b : gcttgtgacttnxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SPL01_0094_G12.b :            nnttgggttgtgacttgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0167_G07.b :                                                             


20110601C-004676 : .....................GGCGGAGGCCGGAAGTGTTGGATTGTAGCGGCTCTGGTA
                   ---------+---------+---------+---------+---------+---------+ 39
LVRM1_0074_A01.b : xxxxxxxxxxxxxxxxxxxxxGGCGGAGGCCGGAAGTGTTGGATTGTAGCGGCTCTGGTA
OVR01_0095_E10.b : xxxxxxxxxxxxxxxxxgctaGGCGGAGGCCGGAAGTGTTGCATTGTAGCGGCTCTGGTA
SPL01_0094_G12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGAAGTGTTGGATTGTAGCGGCTCTGGTA
LVRM1_0167_G07.b :                           xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20110601C-004676 : TTGGAAGCGAGTTAGTAGCGGCAGCCGAGGCAGCGAGGGGGTACCCGAAGCAATCGGATT
                   ---------+---------+---------+---------+---------+---------+ 99
LVRM1_0074_A01.b : TTGGAAGCGAGTTAGTAGCGGCAGCCGAGGCAGCGAGGGGGTACCCGAAGCAATCGGATT
OVR01_0095_E10.b : TTGGAAGCGAGTTAGTACCGGCAGCCGAGGCTGCGAGGGGGTACCCTAAGCAATCTGATT
SPL01_0094_G12.b : TTGGAAGCGAGTTAGTAGCGGCAGCCGAGGCAGCGAGGGGGTACCCGAAGCAATCGGATT
LVRM1_0167_G07.b : xxxxxxxxxxxxxxGTAGCGGCAGCCGAGGCAGCGAGGGGGTACCCGAAGCAATCGGATT


20110601C-004676 : CTTGCGGCTGAGCAGGGTGAGTGGTGCTTGGGGCTCATTCTGGCCGCATACCCGTGGGGC
                   ---------+---------+---------+---------+---------+---------+ 159
LVRM1_0074_A01.b : CTTGCGGCTGAGCAGGGTGAGTGGTGCTTGGGGCTCATTCTGGCCGCATACCCGTGGGGC
OVR01_0095_E10.b : CTTGCGGCTGAGCATGGTGAGTGGTGCTTGGGGCTCATTCTGGCCGCATACCCGTGGGGC
SPL01_0094_G12.b : CTTGCGGCTGAGCAGGGTGAGTGGTGCTTGGGGCTCATTCTGGCCGCATACCCGTGGGGC
LVRM1_0167_G07.b : CTTGCGGCTGAGCAGGGTGAGTGGTGCTTGGGGCTCATTCTGGCCGCATACCCGTGGGGC


20110601C-004676 : GGCTGATGAGCAGCGGTGCTTCCGTGGTACCGGGAGCGCACCTGGGCAGATGTACCAGCC
                   ---------+---------+---------+---------+---------+---------+ 219
LVRM1_0074_A01.b : GGCTGATGAGCAGCGGTGCTTCCGTGGTACCGGGAGCGCACCTGGGCAGATGTACCAGCC
OVR01_0095_E10.b : GGCTGATGAGCAGCGGTGCTTCCGTGGTACCGGGAGCGCACCTGGGCAGATGTACCATCC
SPL01_0094_G12.b : GGCTGATGAGCAGCGGTGCTTCCGTGGTACCGGGAGCGCACCTGGGCAGAAGTACCAGCC
LVRM1_0167_G07.b : GGCTGATGAGCAGCGGTGCTTCCGTGGTACCGGGAGCGCACCTGGGCAGATGTACCAGCC


20110601C-004676 : GCTTCGTGGGTTTCGAGCCCAAGGGCCAGCTCCAGTATCAAAAGCCGGGGGCCGGAAACG
                   ---------+---------+---------+---------+---------+---------+ 279
LVRM1_0074_A01.b : GCTTCGTGGGTTTCGAGCCCAAGGGCCAGCTCCAGTATCAAAAGCCGGGGGCCGGAAACG
OVR01_0095_E10.b : GCTTCGTGGGTTTCGAGCCCAAGGGCCAGCTCCAGTATCAAAAGCCGGGGGCCGGAAACG
SPL01_0094_G12.b : GCTTCGTGGGTTTCGAGCCCAAGGGCCAGCTCCAGTATCAAAAGCCGGGGGCCGGAAACG
LVRM1_0167_G07.b : GCTTCGTGGGTTTCGAGCCCAAGGGCCAGCTCCAGTATCAAAAGCCGGGGGCCGGAAACG


20110601C-004676 : GCCCAGATGCCAATTTTGCCAGACTTGGAGGTCAGGAAATGTGGCTTAGCCTGCTGGCGC
                   ---------+---------+---------+---------+---------+---------+ 339
LVRM1_0074_A01.b : GCCCAGATGCCAATTTTGCCAGACTTGGAGGTCAGGAAATGTGGCTTAGCCTGCTGGCGC
OVR01_0095_E10.b : GCCCAGATGCCAATTTTGCCAGACTTGGAGGTCAGGAAATGTGGCTTAGCCTGCTGGCGC
SPL01_0094_G12.b : GCCCAGATGCCAATTTTGCCAGACTTGGAGGTCAGGAAATGTGGCTTAGCCTGCTGGCGC
LVRM1_0167_G07.b : GCCCAGATGCCAATTTTGCCAGACTTGGAGGTCAGGAAATGTGGCTTAGCCTGCTGGCGC


20110601C-004676 : CGCGAGCTTGGGCGACAGCCGGCCTGGGAAACCCGAGCCCCGCGGATCTGACTCTGGGAC
                   ---------+---------+---------+---------+---------+---------+ 399
LVRM1_0074_A01.b : CGCGAGCTTGGGCGACAGCCGGCCTGGGAAACCCGAGCCCCGCGGATCTGACTCTGGGAC
OVR01_0095_E10.b : CGCGAGCTTGGGCGACAGCCGGCCTGGGAAACCCGAGCCCCGCGGATCTGACTCTGGGAC
SPL01_0094_G12.b : CGCGAGCTTGGGCGACAGCCGGCCTGGGAAACCCGAGCCCCGCGGATCTGACTCTGGGAC
LVRM1_0167_G07.b : CGCGAGCTTGGGCGACAGCCGGCCTGGGAAACCCGAGCCCCGCGGATCTGACTCTGGGAC


20110601C-004676 : TAAGTTTAGTTTCTAACGTAAACTTGCCGGATTCAAGAGTTTGCGCAAAAACTGTAGCCC
                   ---------+---------+---------+---------+---------+---------+ 459
LVRM1_0074_A01.b : TAAGTTTAGTTTCTAACGTAAACTTGCCGGATTCAAGAGTTTGCGCAAAAACTGTAGCCC
OVR01_0095_E10.b : TAAGTTTAGTTTCTCACGTAAACTTGCCGGATTCAAGAGTTTGCGCAAAAACTGTAGCCC
SPL01_0094_G12.b : TAAGTTTAGTTTCTAACGTAAACTTGCCGGATTCAAGAGTTTGCGCAAAAACTGTAGCCC
LVRM1_0167_G07.b : TAAGTTTAGTTTCTAACGTAAACTTGCCGGATTCAAGAGTTTGCGCAAAAACTGTAGCCC


20110601C-004676 : ATTGCCTCCCCCCCCACCACTCCGGCGCACCTCCCCGCTGCAGCTGTTGTTGCAGCTGTG
                   ---------+---------+---------+---------+---------+---------+ 519
LVRM1_0074_A01.b : ATTGCCTCCCCCCCCACCACTCCNGCGCACCTCCCCGCTGCAGCTGTTGTTGCAGCTGTG
OVR01_0095_E10.b : ATTGCCTCCCCCACCACCACTCCGGCGCACCTCCCCGCTGCAGCTGTTGTTGCAGCTGTG
SPL01_0094_G12.b : ATTGCCTCCCCCACCACCACTCCGGCGCACCTCCCCGCTGCAGCTGTTGTTGCAGCTGTG
LVRM1_0167_G07.b : ATTGCCTCCCCCCCCACCACTCCGGCGCACCTCCCCGCTGCAGCTGTTGTTGCAGCTGTG


20110601C-004676 : TGGCTACGTTTAGTTGGAATAACCACCTCAAATTAGCATCTTCCTCAGCTCAGTGTCCAT
                   ---------+---------+---------+---------+---------+---------+ 579
LVRM1_0074_A01.b : TGGCTACGTTTAGTTGGAATAACCACCTCANATTAGCATCTTCCTCAGCTCAGTGTCCAT
OVR01_0095_E10.b : TGGCTACGATTAGTTGGAATAACCACCTCAAATTAGCATCTTCCTCAGCTCAGTGTCCAT
SPL01_0094_G12.b : TGGCTACGTTTAGTTGGAATAACCACCTCAAATTAGCATCTTCCTCAGCTCAGTGTCCAT
LVRM1_0167_G07.b : TGGCTACGTTTAGTTGGAATAACCACCTCAAATTAGCATCTTCCTCAGCTCAGTGTCCAT


20110601C-004676 : TCTGTAATTAGAACTTTGTTTTAAGTGATATTTGGGCAAAGGGAGGTTTGGTG*TTTAAT
                   ---------+---------+---------+---------+---------+---------+ 638
LVRM1_0074_A01.b : TCTGTAATTAGAACTTTGTTTTAAGTGATATTTGGGCCAAGGGAGGTTTGGTG*TTTAAT
OVR01_0095_E10.b : TCTGTAATTAGAACTTTGTTTTAAGTGATATTTGGGCAAAGGGAGGTTTGGTGTTTTAAT
SPL01_0094_G12.b : TCTGTAATTAGAACTTTGTTTTAAGTGATATTTGGGCAAAGGGAGGTTTGGTG*TTTAAT
LVRM1_0167_G07.b : TCTGTAATTAGAACTTTGTTTTAAGTGATATTTGGGCAAAGGGAGGTTTGGTG*TTTAAT


20110601C-004676 : TTGCGGCTTCAGAAAAATTCCATAATACACCACCACATTCCTTTTGGGTGGAGACTTGGG
                   ---------+---------+---------+---------+---------+---------+ 698
LVRM1_0074_A01.b : TTGCGGCTTCAGAAAA*TTCCATAATACACCACCACATTCCTTTTgggtggagacttggg
OVR01_0095_E10.b : TTGCGGCTTCCGAAAAATTTCGTAATACCCCACCACATTCCTTTTtgggtggagactcgg
SPL01_0094_G12.b : TTGCGGCTTCAGAAAAATTCCATAATACACCACCACATTCCTTTTGGGTGGAGACTTGGG
LVRM1_0167_G07.b : TTGCGGCTTCAGAAAAATTCCATAATACACCACCACATTCCTTTTGGGTGGAGACTTGGG


20110601C-004676 : GTTATATCAGTTTCCCAAAGTGTTTCTTTTTATAGTAGTTGAATTGGTTTATCAAAGAGT
                   ---------+---------+---------+---------+---------+---------+ 758
LVRM1_0074_A01.b : gttatatcagttccccaagtgtttcttttatagtacttga                   
OVR01_0095_E10.b : gggttttatcagttcccaaaggtgtttcttttttttagtatttgaattgctttatcaaat
SPL01_0094_G12.b : GTTATATCAGTTTCCCAAAGTGTTTCTTTTTATAGTAGTTGAATTGGTTTATCAAAGAGT
LVRM1_0167_G07.b : GTTATATCAGTTTCCCAAAGTGTTTCGTTTTATAGTAATTGAATTGGTTTATCNAAGAGT


20110601C-004676 : ATGTCAGTTCTTTACAGAACTT......................................
                   ---------+---------+---------+---------+---------+---------+ 780
LVRM1_0074_A01.b :                                                             
OVR01_0095_E10.b : atcatgtcagttcctttacggaacctgggaaataaaaataacctttcaagtgagaatttt
SPL01_0094_G12.b : ATGTCAGTTCTTTACAGAACTTggagtaaaaaataagcgttcaggtgaagattttaactt
LVRM1_0167_G07.b : ATGTCAGTTCTTTCCAGAAacttggagtaaaaataaccgttt                 


20110601C-004676 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 780
LVRM1_0074_A01.b :                                                             
OVR01_0095_E10.b : aacttttgtcgcccaaaggttttttattcttatggtgtactaaagtgggccatttcttct
SPL01_0094_G12.b : cagcgccacaaagttttatatctaaagggtggaggaaagtgagtatttccttaaaaatta
LVRM1_0167_G07.b :                                                             


20110601C-004676 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 780
LVRM1_0074_A01.b :                                                             
OVR01_0095_E10.b : aaattttttcgccggattggtttccggtttccgggaaagggcattttgaataaaactttg
SPL01_0094_G12.b : tggctggttggttttcatgttcctggaagggctttccaattaaaaccttggacccgagaa
LVRM1_0167_G07.b :                                                             


20110601C-004676 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 780
LVRM1_0074_A01.b :                                                             
OVR01_0095_E10.b : ttcccggataagctcttttttttttttctatagatgggagggctttttttcttctttcga
SPL01_0094_G12.b : gccttttttatttttccaaaagggtgaaggcttttgctccctccaggtggaaccccccaa
LVRM1_0167_G07.b :                                                             


20110601C-004676 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 780
LVRM1_0074_A01.b :                                                             
OVR01_0095_E10.b : aaccccgcacacaaaaagattgcccctttgcaaaaaggcgcttaaatactttcttttggg
SPL01_0094_G12.b :                                                            
LVRM1_0167_G07.b :                                                             


20110601C-004676 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 780
LVRM1_0074_A01.b :                                                             
OVR01_0095_E10.b : gttgggctcattctttaggggaattcttgtctcctatacccttatccccgcctgattttg
SPL01_0094_G12.b :                                                             
LVRM1_0167_G07.b :                                                             


20110601C-004676 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 780
LVRM1_0074_A01.b :                                                             
OVR01_0095_E10.b : tcattgcgacattgggcaaactttcctccttttatacttggtgagaggataatctcaacc
SPL01_0094_G12.b :                                                             
LVRM1_0167_G07.b :                                                             


20110601C-004676 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 780
LVRM1_0074_A01.b :                                                             
OVR01_0095_E10.b : ctctcacggtaaaaggtgactctcttc                                
SPL01_0094_G12.b :                                                             
LVRM1_0167_G07.b :