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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-008835

Length: 2,114

Sequence [FASTA format sequence]
GCATTCCCTG TGCAGGTTCT TCATGGATCC ATGAGCCTCA GTCAGATCTC CTGTCGCATA
GAAAAAATGA AGACCTCTGG GACGTGGGCT TGGAGGATGC CGGCAAAGCT GTTTCTTCTC
TGTGCTGCCC TGGGGTGTCT CAGTTTACCT GGCTCCAGAG GTGAGAGGCC ACACTCTCTT
GAGTCAAATG CAGTCAACGA GAGCCTTGGC AAGAGTAGAC AGACGCGGAG TGTGGATGTC
ACCTTGACGC CTATTGATTG TGAACTGTCC AGCTGGTCCT CCTGGACCAC GTGTGATCCC
TGTCAGAAGA AAAGGTACAG ACATGCCTCC TTGCTCCGGC CCTCTCAGTT CCATGGGGAA
CCGTGCCACT TCTCTGACAA GGAAGTTGAA GACTGTGTTT CCAACAGACC ATGCCGAAGT
CAAGTGCGAT GTGAAGGCTT TGTCTGTGCG CAGACAGGGA GGTGCATCAA CCGTAGACTT
CTTTGCAATG GTGACAATGA CTGTGGAGAT CAGTCGGATG AGGCAAACTG TAAAAGGATT
TATAAAAAGT GTCAGCAGGA AATGGACCAG TACTGGGCCA TTGGCAGCCT GGCCAGTGGG
ATAAATTTGT TCACGAACAA CTTGGAGGGC CCAGTTCTCG ATCACAGGTA TTACGCCGGT
GCATGCTCCC CCCATTACAT ACTCAACACG AGGTTTCGGA AACCATACAA TGTGGAAAAC
TTCAACCCAC AGACCCAAGG AAAATATGAC TTTGTACTGA CAGAATACGA ATCATACTCA
GATTTCGAAC AAAATGTCAC AACTGCAGCA ATTAGCAAGT CTAGTTTCAG CTTCGGTTTT
AAAATATCTG GAATGTTTGA ATTTGGCATC AGTAGCACAA GTGATAAAGG CAAACGTTTT
ATTAGCAGAA CCAAGCGATT CTCTCACACG AAAAGCACAT TTCTGCACGC GCGCTCTGAC
CTTGAGGTAG CGCGTTACAA GCTGAAATCC AGAAACCTCA TGCTGCATTA CGAGTTCCTT
CAGAGGGTCA AGCAGCTGCC TCTGGAGTAC AGCTACGGGG AGTACAGAGA TCTCTTCCGA
GATTTTGGGA CCCACTACAT CACAGAGGCC GTGCTCGGGG GTGTTTATGA GTACACACTC
ATCATGAACA AAGAGGCCAT GGAGAGAGCA GATTATTCTC TAAAGGATGT CCATGCCTGT
GCCCAACATG GTTTTAAAAT TGGTGTCGCC ATAGAAGAGG TCTACATCAA GTTGGGGGTG
TCGGTGCACA AGTGCAAGGA CATTCTCAAT GAGATAAAAG ACAGAAACAA GAGAAGCAGC
ATGGTGAATG ACTTGGTGGT CCTTGTGCGG GGAGGTGCAA GTGAACACAT CACTGCCCTG
GCATATAAGG ATCTGCCAAC AGCGGACCTG ATGCAGGAAT GGGGAGATGC AGTGCAGTAC
AACCCAGACA TCATCAAAAT TAAGGCAGAG CCTCTCTATG AACTGGTGAC AGCCGCGGAC
TTTGCCTATT CCAGCACAGT GAAGCAGAAC ATGAAGCGAG CCCTGGAGGA GTTCGAGAAG
GAAATCAGCT CCTGCCACTG TGCTCCCTGC CAGGGGAATG GAGTCCCTGT CCTGAAAGAA
TCACGCTGTG ACTGCATCTG TCCTGCTGGA TTCCAAGGCT CAGCCTGTGA GGTCACCAAT
CGGAAAAATG TCCCCATTGA TGGGAAGTGG AATTGCTGGT CAGACTGGTC TCCGTGTTCT
GGAGGACGTA AAACAAGACG AAGGCAGTGC AACAATCCAC CTCCTCAAAA TGGGGGCAGC
CCCTGCTTGG GTCCTGCTTC AAAAACACTT AACTGTTAAG GAAGGGAGAG CTTCTAGCGG
GTGATGCTAC TGTGGGCTGC CCACAGTGAG AGCTCTGAAC CCTTAAGAAC CCCGGCCCAG
CTCACCTCCA CACCCCCTCC CACCTGGGGC CTGGCCCACA GGGGTGGGAA GGGTTGTGCC
TTTTCGATTT TGAAATAAAA AATGGGAATT TTGAAAAATG CGCCAAAAAA AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAACAA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAGG GGGG


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinC8Bcomplement component C8 beta chain preproprotein [Homo sapiens]. 10410.0O
Contig/Assembly ProteinC8Acomplement component C8 alpha chain precursor [Homo sapiens]. 3351e-91O
Contig/Assembly ProteinC6complement component C6 precursor [Homo sapiens]. 2864e-77O
Contig/Assembly ProteinC6complement component C6 precursor [Homo sapiens]. 2864e-77O
Contig/Assembly ProteinC7complement component C7 precursor [Homo sapiens]. 2497e-66O
Contig/Assembly ProteinC9complement component C9 precursor [Homo sapiens]. 2335e-61O
Contig/Assembly ProteinHMCN1hemicentin-1 precursor [Homo sapiens]. 69.71e-11
Contig/Assembly ProteinSSPOSCO-spondin precursor [Homo sapiens]. 61.63e-09
Contig/Assembly ProteinUNC5Dnetrin receptor UNC5D precursor [Homo sapiens]. 59.71e-08O
Contig/Assembly ProteinSEMA5Asemaphorin-5A precursor [Homo sapiens]. 58.52e-08


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinC8bcomplement component C8 beta chain precursor [Mus musculus]. 9110.0O
Contig/Assembly ProteinC8acomplement component C8 alpha chain precursor [Mus musculus]. 3558e-98O
Contig/Assembly ProteinC6complement component 6 [Mus musculus]. 2942e-79O
Contig/Assembly ProteinC7complement component C7 [Mus musculus]. 2404e-63O
Contig/Assembly ProteinC9complement component C9 [Mus musculus]. 2364e-62O
Contig/Assembly ProteinHmcn1hemicentin 1 [Mus musculus]. 74.73e-13
Contig/Assembly ProteinLOC100505089PREDICTED: SCO-spondin-like isoform 4 [Mus musculus]. 60.17e-09
Contig/Assembly ProteinLOC100505089PREDICTED: SCO-spondin-like isoform 2 [Mus musculus]. 60.17e-09
Contig/Assembly ProteinLOC100505089PREDICTED: SCO-spondin-like isoform 3 [Mus musculus]. 60.17e-09
Contig/Assembly ProteinLOC100505089PREDICTED: SCO-spondin-like isoform 1 [Mus musculus]. 60.17e-09


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC479555PREDICTED: similar to Complement component C8 beta chain precursor (Complement component 8 beta subunit) [Canis familiaris]. 10330.0O
Contig/Assembly ProteinLOC479556PREDICTED: similar to complement component 8, alpha polypeptide precursor [Canis familiaris]. 3497e-96O
Contig/Assembly ProteinLOC479348PREDICTED: similar to Complement component C6 precursor isoform 1 [Canis familiaris]. 2912e-78O
Contig/Assembly ProteinLOC479348PREDICTED: similar to Complement component C6 precursor isoform 2 [Canis familiaris]. 2912e-78O
Contig/Assembly ProteinLOC489221PREDICTED: similar to complement component 7 precursor isoform 1 [Canis familiaris]. 2435e-64O
Contig/Assembly ProteinLOC479354PREDICTED: similar to Complement component C9 precursor [Canis familiaris]. 2035e-52O
Contig/Assembly ProteinLOC479349PREDICTED: similar to complement component 6 [Canis familiaris]. 1666e-41O
Contig/Assembly ProteinLOC489221PREDICTED: similar to complement component 7 precursor isoform 2 [Canis familiaris]. 73.67e-13O
Contig/Assembly ProteinLOC490318PREDICTED: similar to High Incidence of Males (increased X chromosome loss) family member (him-4) [Canis familiaris]. 67.84e-11
Contig/Assembly ProteinSSPOSCO-spondin [Canis lupus familiaris]. 62.81e-09


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinC8Bcomplement component 8, beta polypeptide [Bos taurus]. 10460.0O
Contig/Assembly ProteinC8Acomplement component C8 alpha chain [Bos taurus]. 3428e-94O
Contig/Assembly ProteinC6complement component C6 precursor [Bos taurus]. 2951e-79O
Contig/Assembly ProteinC7complement component C7 precursor [Bos taurus]. 2535e-67O
Contig/Assembly ProteinC9complement component C9 precursor [Bos taurus]. 2373e-62O
Contig/Assembly ProteinHMCN1PREDICTED: hemicentin 1 [Bos taurus]. 68.62e-11
Contig/Assembly ProteinHMCN1hemicentin-1 [Bos taurus]. 68.62e-11
Contig/Assembly ProteinSSPOSCO-spondin precursor [Bos taurus]. 63.57e-10
Contig/Assembly ProteinTHBS2thrombospondin-2 precursor [Bos taurus]. 60.18e-09O
Contig/Assembly ProteinSEMA5APREDICTED: sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A [Bos taurus]. 58.92e-08


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100037954complement component C8B [Sus scrofa]. 11400.0O
Contig/Assembly ProteinC8Acomplement component C8 alpha chain [Sus scrofa]. 3363e-92O
Contig/Assembly ProteinC6complement component C6 [Sus scrofa]. 2964e-80O
Contig/Assembly ProteinC7complement component C7 precursor [Sus scrofa]. 2572e-68O
Contig/Assembly ProteinLOC100037951complement component C9 [Sus scrofa]. 1941e-49O
Contig/Assembly ProteinLOC100627296PREDICTED: complement component C6-like [Sus scrofa]. 1203e-27O
Contig/Assembly ProteinLOC100519793PREDICTED: hemicentin-1-like [Sus scrofa]. 65.51e-10O
Contig/Assembly ProteinLOC100156454PREDICTED: LOW QUALITY PROTEIN: netrin receptor UNC5D-like [Sus scrofa]. 59.76e-09O
Contig/Assembly ProteinLOC100153940PREDICTED: thrombospondin-2-like [Sus scrofa]. 58.22e-08O
Contig/Assembly ProteinTHBS1PREDICTED: thrombospondin-1 [Sus scrofa]. 57.82e-08O


Assembly Members: 7      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LVR010003F01LVR01_0003_F01.bBP445425 
LVR010072G12LVR01_0072_G12.bBP447190 
LVR010088G10LVR01_0088_G10.bCJ000493 
LVR010099G01LVR01_0099_G01.bBP446376 
LVRM10126G06LVRM1_0126_G06.bBP453347 
LVRM10169C09LVRM1_0169_C09.bCJ004561 
LVRM10170A08LVRM1_0170_A08.bCJ004621 

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
107A020.500MNAAG/K
G110.500AGG/R


Alignment:      TOP

20110601C-008835 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVRM1_0169_C09.b : cccttgtcxxxxxxxxxxxxxxxxxxxx
LVRM1_0170_A08.b : ttgtcxxxxxxxxxxxxxxxxx
LVR01_0072_G12.b : tttttttttatctagcttggtgaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0126_G06.b :
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b :
20110601C-008835 : .................................GCATTCCCTGTGCAGGTTCTTCATGGA
---------+---------+---------+---------+---------+---------+ 27
LVRM1_0169_C09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCATTCCCTGTGCAGGTTCTTCATGGA
LVRM1_0170_A08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTCCCTGTGCAGGTTCTTCATGGA
LVR01_0072_G12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTCCCTGTGCAGGTTCTTCATGGA
LVRM1_0126_G06.b : tagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b :
20110601C-008835 : TCCATGAGCCTCAGTCAGATCTCCTGTCGCATAGAAAAAATGAAGACCTCTGGGACGTGG
---------+---------+---------+---------+---------+---------+ 87
LVRM1_0169_C09.b : TCCATGAGCCTCAGTCAGATCTCCTGTCGCATAGAAAAAATGAAGACCTCTGGGACGTGG
LVRM1_0170_A08.b : TCCATGAGCCTCAGTCAGATCTCCTGTCGCATAGAAAAAATGAAGACCTCTGGGACGTGG
LVR01_0072_G12.b : TCCATGAGCCTCAGTCAGATCTCCTGTCGCATAGAAAAAATGAAGACCTCTGGGACGTGG
LVRM1_0126_G06.b : xxxxxxxxxxxxxxxxxGATCTCCTGTCGCATAGAAAAAATGAAGACCTCTGGGACGTGG
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b :
20110601C-008835 : GCTTGGAGGATGCCGGCAAAGCTGTTTCTTCTCTGTGCTGCCCTGGGGTGTCTCAGTTTA
---------+---------+---------+---------+---------+---------+ 147
LVRM1_0169_C09.b : GCTTGGAGGATGCCGGCAAAGCTGTTTCTTCTCTGTGCTGCCCTGGGGTGTCTCAGTTTA
LVRM1_0170_A08.b : GCTTGGAGGATGCCGGCAAAGCTGTTTCTTCTCTGTGCTGCCCTGGGGTGTCTCAGTTTA
LVR01_0072_G12.b : GCTTGGAGGATGCCGGCAAGGCTGTTTCTTCTCTGTGCTGCCCTGGGGTGTCTCAGTTTA
LVRM1_0126_G06.b : GCTTGGAGGATGCCGGCAAGGCTGTTTCTTCTCTGTGCTGCCCTGGGGTGTCTCAGTTTA
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b :
20110601C-008835 : CCTGGCTCCAGAGGTGAGAGGCCACACTCTCTTGAGTCAAATGCAGTCAACGAGAGCCTT
---------+---------+---------+---------+---------+---------+ 207
LVRM1_0169_C09.b : CCTGGCTCCAGAGGTGAGAGGCCACACTCTCTTGAGTCAAATGCAGTCAACGAGAGCCTT
LVRM1_0170_A08.b : CCTGGCTCCAGAGGTGAGAGGCCACACTCTCTTGAGTCAAATGCAGTCAACGAGAGCCTT
LVR01_0072_G12.b : CCTGGCTCCAGAGGTGAGAGGCCACACTCTCTTGAGTCAAATGCAGTCAACGAGAGCCTT
LVRM1_0126_G06.b : CCTGGCTCCAGAGGTGAGAGGCCACACTCTCTTGAGTCAAATGCAGTCAACGAGAGCCTT
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b :
20110601C-008835 : GGCAAGAGTAGACAGACGCGGAGTGTGGATGTCACCTTGACGCCTATTGATTGTGAACTG
---------+---------+---------+---------+---------+---------+ 267
LVRM1_0169_C09.b : GGCAAGAGTAGACAGACGCGGAGTGTGGATGTCACCTTGACGCCTATTGATTGTGAACTG
LVRM1_0170_A08.b : GGCAAGAGTAGACAGACGCGGAGTGTGGATGTCACCTTGACGCCTATTGATTGTGAACTG
LVR01_0072_G12.b : GGCAAGAGTAGACAGACGCGGAGTGTGGATGTCACCTTGACGCCTATTGATTGTGAACTG
LVRM1_0126_G06.b : GGCAAGAGTAGACAGACGCGGAGTGTGGATGTCACCTTGACGCCTATTGATTGTGAACTG
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b :
20110601C-008835 : TCCAGCTGGTCCTCCTGGACCACGTGTGATCCCTGTCAGAAGAAAAGGTACAGACATGCC
---------+---------+---------+---------+---------+---------+ 327
LVRM1_0169_C09.b : TCCAGCTGGTCCTCCTGGACCACGTGTGATCCCTGTCAGAAGAAAAGGTACAGACATGCC
LVRM1_0170_A08.b : TCCAGCTGGTCCTCCTGGACCACGTGTGATCCCTGTCAGAAGAAAAGGTACAGACATGCC
LVR01_0072_G12.b : TCCAGCTGGTCCTCCTGGACCACGTGTGATCCCTGTCAGAAGAAAAGGTACAGACATGCC
LVRM1_0126_G06.b : TCCAGCTGGTCCTCCTGGACCACGTGTGATCCCTGTCAGAAGAAAAGGTACAGACATGCC
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b :
20110601C-008835 : TCCTTGCTCCGGCCCTCTCAGTTCCATGGGGAACCGTGCCACTTCTCTGACAAGGAAGTT
---------+---------+---------+---------+---------+---------+ 387
LVRM1_0169_C09.b : TCCTTGCTCCGGCCCTCTCAGTTCCATGGGGAACCGTGCCACTTCTCTGACAAGGAAGTT
LVRM1_0170_A08.b : TCCTTGCTCCGGCCCTCTCAGTTCCATGGGGAACCGTGCCACTTCTCTGACAAGGAAGTT
LVR01_0072_G12.b : TCCTTGCTCCGGCCCTCTCAGTTCCATGGGGAACCGTGCAACTTCTCTGACAAGGAAGTT
LVRM1_0126_G06.b : TCCTTGCTCCGGCCCTCTCAGTTCCATGGGGAACCGTGCCACTTCTCTGACAAGGAAGTT
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b :
20110601C-008835 : GAAGACTGTGTTTCCAACAGACCATGCCGAAGTCAAGTGCGATGTGAAGGCTTTGTCTGT
---------+---------+---------+---------+---------+---------+ 447
LVRM1_0169_C09.b : GAAGACTGTGTTTCCAACAGACCATGCCGAAGTCAAGTGCGATGTGAAGGCTTTGTCTGT
LVRM1_0170_A08.b : GAAGACTGTGTTTCCAACAGACCATGCCGAAGTCAAGTGCGATGTGAAGGCTTTGTCTGT
LVR01_0072_G12.b : GAAGACTGTGTTTCCAACAGACCATGCCGAAGTCAAGTGCGATGTGAAGGCTTTGTGTGT
LVRM1_0126_G06.b : GAAGACTGTGTTTCCAACAGACCATGCCGAAGTCAAGTGCGATGTGAAGGCTTTGTCTGT
LVR01_0088_G10.b :
LVR01_0099_G01.b : t
LVR01_0003_F01.b :
20110601C-008835 : GCGCAGACAGGGAGGTGCATCAACCGTAGACTTCTTTGCAATGGTGACAATGACTGTGGA
---------+---------+---------+---------+---------+---------+ 507
LVRM1_0169_C09.b : GCGCAGACAGGGAGGTGCATCAACCGTAGACTTCTTTGCAATGGTGACAATGACTGTGGA
LVRM1_0170_A08.b : GCGCAGACAGGGAGGTGCATCAACCGTAGACTTCTTTGCAATGGTGACAATGACTGTGGA
LVR01_0072_G12.b : GCGCAGACAGGGAGATGCATCAACCGTAGACTTCTTTGCAATGGTGACAATGACTGTGGA
LVRM1_0126_G06.b : GCGCAGACAGGGAGGTGCATCAACCGTAGACTTCTTTGCAATGGTGACAATGACTGTGGA
LVR01_0088_G10.b : cctxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0099_G01.b : tttaatcgcattgtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0003_F01.b :
20110601C-008835 : GATCAGTCGGATGAGGCAAACTGTAAAAGGATTTATAAAAAGTGTCAGCAGGAAATGGAC
---------+---------+---------+---------+---------+---------+ 567
LVRM1_0169_C09.b : GATCAGTCGGATGAGGCGAACTGTAAAAGGATTTTATAAAAGTGTCAGCAGGAAATGGAC
LVRM1_0170_A08.b : GATCAGTCGGATGAGGCGAACTGTAAAAGGATTTATAAAAAGTGTCAGCAGGAAATGGAC
LVR01_0072_G12.b : GATCAGTCGGATGAGGCAAACTGTAAAAGGATTTATAAAAAGTGTCAGCAGGAAATGGAC
LVRM1_0126_G06.b : GATCAGTCGGATGAGGCGAACTGTAAAAGGATTTATAAAAAGTGTCAGCAGGAAATGGAC
LVR01_0088_G10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxGGATTTATAAAAAGTGTCAGCAGGAAATGGAC
LVR01_0099_G01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxGGATTTATAAAAAGTGTCAGCAGGAAATGGAC
LVR01_0003_F01.b :
20110601C-008835 : CAGTACTGGGCCATTGGCAGCCTGGCCAGTGGGATAAATTTGTTCACGAACAACTTGGAG
---------+---------+---------+---------+---------+---------+ 627
LVRM1_0169_C09.b : CAGTACTGGGCCATTGGCAGCCTGGCCAGTGGGATA*ATTTGTTCACGAACAACTTGGAG
LVRM1_0170_A08.b : CAGTACTGGGCCATTGGCAGCCTGGCCAGTGGGATAAATTTGTTCACGAACAACTTGGAG
LVR01_0072_G12.b : CAGTACTGGGCCATTGGCAGCCTGGCCAGTGGGATAAATTTGTTCACGAACAACTTGGAG
LVRM1_0126_G06.b : CAGTACTGGGCCATTGGCAGCCTGGCCAGTGGGATAAATTTGTTCACGAACAACTTAGGA
LVR01_0088_G10.b : CAGTACTGGGCCATTGGCAGCCTGGCCAGTGGGATAAATTTGTTCACGAACAACTTGGAG
LVR01_0099_G01.b : CAGTACTGGGCCATTGGCAGCCTGGCCAGTGGGATAAATTTGTTCACGAACAACTTGGAG
LVR01_0003_F01.b :
20110601C-008835 : GGCCCAGTTCTCGATCACAGGTATTACGCCGGTGCATGCTCCCCCCATTACATACTCAAC
---------+---------+---------+---------+---------+---------+ 687
LVRM1_0169_C09.b : GGCCCAGTTCTCGATCACAGGTATTACGCCGGTGCATGCTCCCCCC*TTACATACTCAAC
LVRM1_0170_A08.b : GGCCCAGTTCTCGATCACAGGTATTACGCCGGTGCATGCTCCCCCCATTACATACTCAAC
LVR01_0072_G12.b : GGCCCAGTTCTCGATCACAGGTATTACGCCGGTGCATGCTCCCCCCATTACATACTCAAC
LVRM1_0126_G06.b : GGCCCAGTTCTCGATCACAGGTATTACGCCGGTGCATGCTCCCCC*ATTACATACTCAAC
LVR01_0088_G10.b : GGCCCAGTTCTCGATCACAGGTATTACGCCGGTGCATGCTCCCCCCATTACATACTCAAC
LVR01_0099_G01.b : GGCCCAGTTCTCGATCACAGGTATTACGCCGGTGCATGCTCCCCCCATTACATACTCAAC
LVR01_0003_F01.b :
20110601C-008835 : ACGAGGTTTCGGAAACCATACAATGTGGAAAACTTCAACCCACAGACCCAA*GGAAAATA
---------+---------+---------+---------+---------+---------+ 746
LVRM1_0169_C09.b : ACGAGGTTTCGGAAACCCTACTATGTGGAAAACTTC*ACCCACAGACCCAA*GGAAAATt
LVRM1_0170_A08.b : ACGAGGTTTCGGAAACCATACNATGTGGAAAACTTCAACCacagaccca
LVR01_0072_G12.b : ACGAGGTTTCGGAAACCATACAATGTGGAAAACTTCAACCCACAGACCCAA*GGAAAATA
LVRM1_0126_G06.b : ACGAGGTTTCGGAAAACCATACATGTGGGAAAATTCTACCCACAAACCCAAAGGAAAATA
LVR01_0088_G10.b : ACGAGGTTTCGGAAACCATACAATGTGGAAAACTTCAACCCACAGACCCAA*GGAAAATA
LVR01_0099_G01.b : ACGAGGTTTCGGAAACCATACAATGTGGAAAACTTCAACCCACAGACCCAA*GGAAAATA
LVR01_0003_F01.b :
20110601C-008835 : TGACTTTGTACTGACAGAATACGAATCATACTCAGATTTCGAACAAAATGTCACAACTGC
---------+---------+---------+---------+---------+---------+ 806
LVRM1_0169_C09.b : gag
LVRM1_0170_A08.b :
LVR01_0072_G12.b : TGACTTTGCACTGACAGAATACGAATCATACTCAGATTTCGAACAAAATGTCACAACTGC
LVRM1_0126_G06.b : TGACTTTGCACTGACAGAATACGAATCATACTCAGATTTCGAACAAAATGTCCCAACTGC
LVR01_0088_G10.b : TGACTTTGTACTGACAGAATACGAATCATACTCAGATTTCGAACAAAATGTCACAACTGC
LVR01_0099_G01.b : TGACTTTGTACTGACAGAATACGAATCATACTCAGATTTCGAACAAAATGTCACAACTGC
LVR01_0003_F01.b :
20110601C-008835 : AGCAATTAGCAAGTCTAGTTTCAGCTTCGGTTTTAAAATATCTGGAATGTTTGAATTTGG
---------+---------+---------+---------+---------+---------+ 866
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b : AGCAATTAGCAAGTCTAGTTTCAGCTTCGGGTTTAAAATATCTGGAATGTTTGAATTTGG
LVRM1_0126_G06.b : ANCAATTTACAAGTCTAGTTTCAc
LVR01_0088_G10.b : AGCAATTAGCAAGTCTAGTTTCAGCTTCGGTTTTAAAATATCTGGAATGTTTGAATTTGG
LVR01_0099_G01.b : AGCAATTAGCAAGTCTAGTTTCAGCTTCGGTTTTAAAATATCTGGAATGTTTGAATTTGG
LVR01_0003_F01.b :
20110601C-008835 : CATCAGTAGCACAAGTGATAAAGGCAAACGTTTTATTAGCAGAACCAAGCGATTCTCTCA
---------+---------+---------+---------+---------+---------+ 926
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b : CATCAGTAGCACAAGTGATAAAAGCAAACGTTTTATTACCAAAACCAACCGATTCTCTCA
LVRM1_0126_G06.b :
LVR01_0088_G10.b : CATCAGTAGCACAAGTGATAAAGGCAAACGTTTTATTAGCAGAACCAAGCGATTCTCTCA
LVR01_0099_G01.b : CATCAGTAGCACAAGTGATAAAGGCAAACGTTTTATTAGCAGAACCAAGCGATTCTCTCA
LVR01_0003_F01.b : txxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-008835 : CACGAAAAGCACATTTCTGCACGCGCGCTCTGACCTTGAGGTAGCGCGTTACAAGCTGAA
---------+---------+---------+---------+---------+---------+ 986
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b : CCCGAAAAGCACATTTtctgcccccgcgctcg
LVRM1_0126_G06.b :
LVR01_0088_G10.b : CACGAAAAGCACATTTCTGCACGCGCGCTCTGACCTTGAGGTAGCGCGTTACAAGCTGAA
LVR01_0099_G01.b : CACGAAAAGCACATTTCTGCACGCGCGCTCTGACCTTGAGGTAGCGCGTTACAAGCTGAA
LVR01_0003_F01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAAGCTGAA
20110601C-008835 : ATCCAGAAACCTCATGCTGCATTACGAGTTCCTTCAGAGGGTCAAGCAGCTGCCTCTGGA
---------+---------+---------+---------+---------+---------+ 1046
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b : ATCCAGAAACCTCATGCTGCATTACGAGTTCCTTCAGAGGGTCAAGCAGCTGCCTCTGGA
LVR01_0099_G01.b : ATCCAGAAACCTCATGCTGCATTACGAGTTCCTTCAGAGGGTCAAGCAGCTGCCTCTGGA
LVR01_0003_F01.b : ATCCAGAAACCTCATGCTGCATTACGAGTTCCTTCAGAGGGTCAAGCAGCTGCCTCTGGA
20110601C-008835 : GTACAGCTACGGGGAGTACAGAGATCTCTTCCGAGATTTTGGGACCCACTACATCACAGA
---------+---------+---------+---------+---------+---------+ 1106
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b : GTACAGCTACGGGGAGTACAGAGATCTCTTCCGAGATTTTGGGACCCACTACATCACAGA
LVR01_0099_G01.b : GTACAGCTACGGGGAGTACAGAGATCTCTTCCGAGATTTTGGGACCCACTACATCACAGA
LVR01_0003_F01.b : GTACAGCTACGGGGAGTACAGAGATCTCTTCCGAGATTTTGGGACCCACTACATCACAGA
20110601C-008835 : GGCCGTGCTCGGGGGTGTTTATGAGTACACACTCATCATGAACAAAGAGGCCATGGAGAG
---------+---------+---------+---------+---------+---------+ 1166
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b : GGCCGTGCTCGGGGGTGTTTATGAGTACACACTCATCATGAACAAAGAGGCCATGGAGAG
LVR01_0099_G01.b : GGCCGTGCTCGGGGGTGTTTATGAGTACACACTCATCATGAACAAAGAGGCCATGGAGAG
LVR01_0003_F01.b : GGCCGTGCTCGGGGGTGTTTATGAGTACACACTCATCATGAACAAAGAGGCCATGGAGAG
20110601C-008835 : AGCAGATTATTCTCTAAAGGATGTCCATGCCTGTGCCCAACATGGTTTTAAAATTGGTGT
---------+---------+---------+---------+---------+---------+ 1226
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b : AGCAGATTATTCTCTAAAGGATGTCCATGCCTGTGCCCAACATGGTTTTAAAATTGGTGT
LVR01_0099_G01.b : AGCAGATTATTCTCTAAAGGATGTCCATGCCTGTGCCCAACATGGTTTTAAAATTGGTGT
LVR01_0003_F01.b : AGCAGATTATTCTCTAAAGGATGTCCATGCCTGTGCCCAACATGGTTTTAAAATTGGTGT
20110601C-008835 : CGCCATAGAAGAGGTCTACATCAAGTTGGGGGTGTCGGTGCACAAGTGCAAGGACATTCT
---------+---------+---------+---------+---------+---------+ 1286
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b : CGCCATAGAAGAGGTCTACATCAAGTTGGGGGTGTCGGTGCACAAGTGCAAGGACATTCT
LVR01_0099_G01.b : CGCCATAGAAGAGGTCTACATCAAGTTGGGGGTGTCGGTGCACAAGTGCAAGGACATTCT
LVR01_0003_F01.b : CGCCATAGAAGAGGTCTACATCAAGTTGGGGGTGTCGGTGCACAAGTGCAAGGACATTCT
20110601C-008835 : CAATGAGATAAAAGACAGAAACAAGAGAAGCAGCATGGTGAATGACTTGGTGGTCCTTGT
---------+---------+---------+---------+---------+---------+ 1346
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b : CAATGAGATAAAAGACAGAAACAAGAGAAGCAGCATGGTTGATGAACTGGTGGTCCTTGT
LVR01_0099_G01.b : CAATGAGATAAAAGACAGAAACAAGAGAAGCAGCATGGTGAATGACTTGGTGGTCCTTGT
LVR01_0003_F01.b : CAATGAGATAAAAGACAGAAACAAGAGAAGCAGCATGGTGAATGACTTGGTGGTCCTTGT
20110601C-008835 : GCGGGGAGGTGCAAGTGAACACATCACTGCCCTGGCATATAAGGATCTGCCAACAGCGGA
---------+---------+---------+---------+---------+---------+ 1406
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b : GCGGGGAGGTGCAAGTGAACACATCACTGCCCTGGCATATAAGGAatctgccaacaacgg
LVR01_0099_G01.b : GCGGGGAGGTGCAAGTGAACACATCACTGCCCTGGCATATAAGGATCTGCCAACAGCGGA
LVR01_0003_F01.b : GCGGGGAGGTGCAAGTGAACACATCACTGCCCTGGCATATAAGGATCTGCCAACAGCGGA
20110601C-008835 : CCTGATGCAGGAATGGGGAGATGCAGTGCAGTACAACCCAGACATCATC*AAAATTAAGG
---------+---------+---------+---------+---------+---------+ 1465
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b : gacctgaagcaggaatggggaaaatgcatggcaatacaacccagacatcctcaaaattaa
LVR01_0099_G01.b : CCTGATGCAGGAATGGGGAGATGCAGTGCAGTACAACCCAGACATCATCAAAAATTAGGG
LVR01_0003_F01.b : CCTGATGCAGGAATGGGGAGATGCAGTGCAGTACAACCCAGACATCATC*AAAATTAAGG
20110601C-008835 : CAGAGCCTCTCTAT*GAACTGGTGACAGCC*GCGGACTTTGCCTATTCCAGCACAGTGAA
---------+---------+---------+---------+---------+---------+ 1523
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b : ggcaaagcctctctaataactgggtgacacccccggaacttttcctattccccccccaat
LVR01_0099_G01.b : CAGAGCCTCTCTATTGAACTGGTGACAGCCCGCGGACTTTGCCTATTCCAGCCCAGTtga
LVR01_0003_F01.b : CAGAGCCTCTCTAT*GAACTGGTGACAGCC*GCGGACTTTGCCTATTCCAGCACAGTGAA
20110601C-008835 : GCAGAACATGAAGCGAGCCCTGGAGGAGTTCGAGAAGGAAATCAGCTCCTGCCACTGTGC
---------+---------+---------+---------+---------+---------+ 1583
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b : gaaaccaaaacattaaaccgggccccctggaggaatttccaaaagggaaaaaccaccccc
LVR01_0099_G01.b : accaaaacatgaaagcgagcccctggaaggagttccagagggaaaatccgcctcctgccc
LVR01_0003_F01.b : GCAGAACATGAAGCGAGCCCTGGAGGAGTTCGAGAAGGAAATCAGCTCCTGCCACTGTGC
20110601C-008835 : TCCCTGCCAGGGGAATGGAGTCCCTGTCCTGAAAGAATCACGCTGTGACTGCATCTGTCC
---------+---------+---------+---------+---------+---------+ 1643
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b : ctcccccctttggccccccccggccccggggaaaatgggaatccccccttgtccccgaaa
LVR01_0099_G01.b : cctggggctcccctgcccagggggaaatgggaaatccccctgttccctggaaaaaaaatc
LVR01_0003_F01.b : TCCCTGCCAGGGGAATGGAGTCCCTGTCCTGAAAGAATCACGCTGTGACTGCATCTGTCC
20110601C-008835 : TGCTGGATTCCAAGGCTCAGCCTGTGAGGTCACCAATCGGAAAAATGTCCCCATTGATGG
---------+---------+---------+---------+---------+---------+ 1703
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b : aaaaaaacccccccccgtgtggccactcgcccctcttttttccctccgggcgtggagaat
LVR01_0099_G01.b : caccccctgttgaacacggcccttcttggtccccgggtctgggaaatttc
LVR01_0003_F01.b : TGCTGGATTCCAAGGCTCAGCCTGTGAGGTCACCAATCGGAAAAATGTCCCCATTGATGG
20110601C-008835 : GAAGTGGAATTGCTGGTCAGACTGGTCTCCGTGTTCTGGAGGACGTAAAACAAGACGAAG
---------+---------+---------+---------+---------+---------+ 1763
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b : ttccccacaggggggccccctccccccccccccttgggtgggaaggagggggtccca
LVR01_0099_G01.b :
LVR01_0003_F01.b : GAAGTGGAATTGCTGGTCAGACTGGTCTCCGTGTTCTGGAGGACGTAAAACAAGACGAAG
20110601C-008835 : GCAGTGCAACAATCCACCTCCTCAAAATGGGGGCAGCCCCTGCTTGGGTCCTGCTTCAAA
---------+---------+---------+---------+---------+---------+ 1823
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b : GCAGTGCAACAATCCACCTCCTCAAAATGGGGGCAGCCCCTGCTTGGGTCCTGCTTCAAA
20110601C-008835 : AACACTTAACTGTTAAGGAAGGGAGAGCTTCTAGCGGGTGATGCTACTGTGGGCTGCCCA
---------+---------+---------+---------+---------+---------+ 1883
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b : AACACTTAACTGTTAAGGAAGGGAGAGCTTCTAGCGGGTGATGCTACTGTGGGCTGCCCA
20110601C-008835 : CAGTGAGAGCTCTGAACCCTTAAGAACCCCGGCCCAGCTCACCTCCACACCCCCTCCCAC
---------+---------+---------+---------+---------+---------+ 1943
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b : CAGTGAGAGCTCTGAACCCTTAAGAACCCCGGCCCAGCTCACCTCCACACCCCCTCCCAC
20110601C-008835 : CTGGGGCCTGGCCCACAGGGGTGGGAAGGGTTGTGCCTTTTCGATTTTGAAATAAAAAAT
---------+---------+---------+---------+---------+---------+ 2003
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b : CTGGGGCCTGGCCCACAGGGGTGGGAAGGGTTGTGCCTTTTCGATTTTGAAATAAAAAAT
20110601C-008835 : GGGAATTTTGAAAAATGCGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
---------+---------+---------+---------+---------+---------+ 2063
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b : GGGAATTTTGAAAAATGCGCCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
20110601C-008835 : AAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGG.........
---------+---------+---------+---------+---------+---------+ 2114
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b : aaaaaaaaaaaaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGGGGGggccccctt
20110601C-008835 : ............................................................
---------+---------+---------+---------+---------+---------+ 2114
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b : gtggtggctcctcgaggcgcttgcgggggggggggcggggggggcccccccccccccttc
20110601C-008835 : ............................................................
---------+---------+---------+---------+---------+---------+ 2114
LVRM1_0169_C09.b :
LVRM1_0170_A08.b :
LVR01_0072_G12.b :
LVRM1_0126_G06.b :
LVR01_0088_G10.b :
LVR01_0099_G01.b :
LVR01_0003_F01.b : tcttagaagaaaatattttat