[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-009515
Length:
847
Sequence:
[FASTA format sequence]
AGCCAGTGCG CAGGCGCGAC CGCTCGGGGC CCCGGATGGA CGAGCTAAGT TAAGGGTAGG
CTGCACGTCT TCTGTTGTCG CTGGGTCTAG AGCTTGACTC TAGAGAGAGG AAAGGAAGAA
TGGAAGCCTG GTGAAGAGGC AGAGAAGCCT GAAGGAGCTC AGTCCTGGAA GCAGCCCCTC
TGAATTCCTG GTGGTGAGAG GATGTGGCCC CTGGACCCAT CCCTGAAAGA GGTGCTGGGG
TTTGCCGTCG GCTGCCGTGT CCTGACTCTG GTGTTGCAGG CTTTCTTCAA TGCCATCATC
CCAGACCACC GTGCAGAAGC TTTCTCGCCT CCTCGCTTTG GCCCCTCCAG CTCTGTGGAC
CAACTTGTAG AAGGTCTCCT GGGTGGTCTG TCTCACTGGG ATGCTGAACA CTTCCTGTTC
ATTGCTGAGC ATGGCTACCT GTATGAGCAC AACTTTGCCT TCTTCCCTGG TTTCCCCCTG
GTCCTGTTGG TGGGGACTGA GTTGCTGAGA CCCCTGTGGG GGTTACTGAG CCTACGGAGT
TGCCTACTAA TCTCAGTAGC ATTGCTCAAT TCCTTGTTCT CTGTGCTGGC TGCACTCGCA
CTTCATGACC TGGGCTGTCT GGTTCTGCAC TGTCCCCGCC AGGCCTTTTA CGGAGCACTG
CTCTTCTGCC TCAGTCCTGC CAATGTCTTC CTGACAGCTG GTTACTCAGA AGCTTTGTTT
GCCCTCCTGA CATTCAGTGC CATGGCGCAG CTGGAAAGGG GCCGAAGCTG GACTAGTGGA
CTTCTCTTTG CCCTTGCCAC TGGTGTACGC GCCAATGGGC TGGTCACGTC GGCTTCCTCG
TGCATTC
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
PIGV | GPI mannosyltransferase 2 [Homo sapiens]. | 326 | 2e-89 | O | ||
PIGV | GPI mannosyltransferase 2 [Homo sapiens]. | 326 | 2e-89 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
Pigv | GPI mannosyltransferase 2 isoform 1 [Mus musculus]. | 315 | 4e-86 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC478172 | PREDICTED: similar to phosphatidylinositol glycan class V [Canis familiaris]. | 337 | 1e-92 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
PIGV | GPI mannosyltransferase 2 [Bos taurus]. | 347 | 1e-95 | O | ||
PIGV | PREDICTED: phosphatidylinositol glycan anchor biosynthesis, class V [Bos taurus]. | 347 | 1e-95 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC100624784 | PREDICTED: GPI mannosyltransferase 2-like isoform 2 [Sus scrofa]. | 378 | e-105 | O | ||
LOC100624784 | PREDICTED: GPI mannosyltransferase 2-like isoform 1 [Sus scrofa]. | 378 | e-105 | O | ||
PIGV | PREDICTED: GPI mannosyltransferase 2 isoform 1, partial [Sus scrofa]. | 325 | 1e-89 | O |
|
|
20110601C-009515 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
AMP01_0050_G05.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnxxxxxxxxxx
BMWN1_0094_E03.b :
OVRM1_0188_D06.b :
OVRM1_0213_F02.b :
DCI01_0023_C06.b :
20110601C-009515 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
AMP01_0050_G05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
BMWN1_0094_E03.b :
OVRM1_0188_D06.b :
OVRM1_0213_F02.b :
DCI01_0023_C06.b : nnaaaactatcttx
20110601C-009515 : .....................................................AGCCAGT
---------+---------+---------+---------+---------+---------+ 7
AMP01_0050_G05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGCCAGT
BMWN1_0094_E03.b : tttttccgaggtaagaggcagtxxxxxxxxxxxxxxxxx
OVRM1_0188_D06.b :
OVRM1_0213_F02.b :
DCI01_0023_C06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-009515 : GCGCAGGCGCGACCGCTCGGGGCCCCGGATGGACGAGCTAAGTTAAGGGTAGGCTGCACG
---------+---------+---------+---------+---------+---------+ 67
AMP01_0050_G05.b : GCGCAGGCGCGACCGCTCGGGGCCCCGGATGGACGAGC*****TAAGGGTAGGCTGCACG
BMWN1_0094_E03.b : xxxxxxxxxxxxxxxxxxxxGGCCCCGGATGGACGAGCTAAGTTAAGGGTAGGCTGCACG
OVRM1_0188_D06.b : gcgtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0213_F02.b : cgttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
DCI01_0023_C06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-009515 : TCTTCTGTTGTCGCTGGGTCTAGAGCTTGACTCTAGAGAGAGGAAAGGAAGAATGGAAGC
---------+---------+---------+---------+---------+---------+ 127
AMP01_0050_G05.b : TCTTCTGTTGTCGCTGGGTCTAGAGCTTGACTCTAGAGAGAGGAAAGGAAGAATGGAAGC
BMWN1_0094_E03.b : TCTTCTGTTGTCGCTGGGTCTAGAGCTTGACTCTAGAGAGAGGAAAGGAAGAATGGAAGC
OVRM1_0188_D06.b : xxxxxxxxxxxxxxxxxxxgatcggcggagccagtgcgcaggcgcgaccgctcggggccc
OVRM1_0213_F02.b : xxxxxxxxxxxxxxxxxxxgatcggcggagccagtgcgcaggcgcgaccgctcggggccc
DCI01_0023_C06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxagccagtgcgcaggcgcgaccgctcggggccc
20110601C-009515 : CTGGTGAAGAGGCAGAGAAGCCTGAAGGAGCTCAGTCCTGGAAGCAGCCCCTCTGAATTC
---------+---------+---------+---------+---------+---------+ 187
AMP01_0050_G05.b : CTGGTGAAGAGGCAGAGAAGCCTGAAGGAGCTCAGTCCTGGAAGCACCCCCTCTGAATTC
BMWN1_0094_E03.b : CTGGTGAAGAGGCAGAGAAGCCTGAAGGAGCTCAGTCCTGGAAGCAGCCCCTCTGAATTC
OVRM1_0188_D06.b : cggatggacgagctaAGAAGCCTGAAGGAGCTCAGTCCTGGAAGCAGCCCCTCTGAATTC
OVRM1_0213_F02.b : cggatggacgagctaAGAAGCCTGAAGGAGCTCAGTCCTGGAAGCAGCCCCTCTGAATTC
DCI01_0023_C06.b : cggatggacgagctaAGAAGCCTGAAGGAGCTCAGTCCTGGAAGCAGCCCCTCTGAATTC
20110601C-009515 : CTGGTGGTGAGAGGATGTGGCCCCTGGACCCATCCCTGAAAGAGGTGCTGGGGTTTGCCG
---------+---------+---------+---------+---------+---------+ 247
AMP01_0050_G05.b : CTGGTGGTGAGAGGATGTGGCCCCTGGACCCATCCCTGAAAGAGGTGCTGGGGTTTGCCG
BMWN1_0094_E03.b : CTGGTGGTGAGAGGATGTGGCCCCTGGACCCATCCCTGAAAGAGGTGCTGGGGTTTGCCG
OVRM1_0188_D06.b : CTGGTGGTGAGAGGATGTGGCCCCTGGACCCATCCCTGAAAGAGGTGCTGGGGTTTGCCG
OVRM1_0213_F02.b : CTGGTGGTGAGAGGATGCGGCCCCTGGACCCATCCCTGAAAGAGGTGCTGGGGTTTGCCG
DCI01_0023_C06.b : CTGGTGGTGAGAGGATGTGGCCCCTGGACCCATCCCTGAAAGAGGTGCTGGGGTTTGCCG
20110601C-009515 : TCGGCTGCCGTGTCCTGACTCTGGTGTTGCAGGCTTTCTTCAATGCCATCATCCCAGACC
---------+---------+---------+---------+---------+---------+ 307
AMP01_0050_G05.b : TCGGCTGCCGTGTCCTGACTCTGGTGTTGCAGGCTTTCTTCAATGCCATCATCCCAGACC
BMWN1_0094_E03.b : TCGGCTGCCGTGTCCTGACTCTGGTGTTGCAGGCTTTCTTCAATGCCATCATCCCAGACC
OVRM1_0188_D06.b : TCGGCTGCCGTGTCCTGACTCTGGTGTTGCAGGCTTTCTTCAATGCCATCATCCCAGACC
OVRM1_0213_F02.b : TCGGCTGCCGTGTCCTGACTCTGGTGTTGCAGGCTTTCTTCAATGCCATCATCCCAGACC
DCI01_0023_C06.b : TCGGCTGCCGTGTCCTGACTCTGGTGTTGCAGGCTTTCTTCAATGCCATCATCCCAGACC
20110601C-009515 : ACCGTGCAGAAGCTTTCTCGCCTCCTCGCTTTGGCCCCTCCAGCTCTGTGGACCAACTTG
---------+---------+---------+---------+---------+---------+ 367
AMP01_0050_G05.b : ACCGTGCAGAAGCTTTCTCGCCTCCTCGCTTTGGCCCCTCCAGCTCTGTGGACCAACTTG
BMWN1_0094_E03.b : ACCGTGCAGAAGCTTTCTCGCCTCCTCGCTTTGGCCCCTCCAGCTCTGTGGACCAACTTG
OVRM1_0188_D06.b : ACCGTGCAGAAGCTTTCTCGCCTCCTCGCTTTGGCCCCTCCAGCTCTGTGGACCAACTTG
OVRM1_0213_F02.b : ACCGTGCAGAAGCTTTCTCGCCTCCTCGCTTTGGCCCCTCCAGCTCTGTGGACCAACTTG
DCI01_0023_C06.b : ACCGTGCAGAAGCTTTCTCGCCTCCTCGCTTTGGCCCCTCCAGCTCTGTGGACCAACTTG
20110601C-009515 : TAGAAGGTCTCCTGGGTGGTCTGTCTCACTGGGATGCTGAACACTTCCTGTTCATTGCTG
---------+---------+---------+---------+---------+---------+ 427
AMP01_0050_G05.b : TAGAAGGTCTCCTGGGTGGTCTGTCTCACTGGGATGCTGAACACTTCCTGTTCATTGCTG
BMWN1_0094_E03.b : TAGAAGGTCTCCTGGGTGGTCTGTCTCACTGGGATGCTGAACACTTCCTGTTCATTGCTG
OVRM1_0188_D06.b : TAGAAGGTCTCCTGGGTGGTCTGTCTCACTGGGATGCTGAACACTTCCTGTTCATTGCTG
OVRM1_0213_F02.b : TAGAAGGTCTCCTGGGTGGTCTGTCTCACTGGGATGCTGAACACTTCCTGTTCATTGCTG
DCI01_0023_C06.b : TAGAAGGTCTCCTGGGTGGTCTGTCTCACTGGGATGCTGAACACTTCCTGTTCATTGCTG
20110601C-009515 : AGCATGGCTACCTGTATGAGCACAACTTTGCCTTCTTCCCTGGTTTCCCCCTGGTCCTGT
---------+---------+---------+---------+---------+---------+ 487
AMP01_0050_G05.b : AGCATGGCTACCTGTATGAGCACAACTTTGCCTTCTTCCCTGGTTTCCCCCTGGTCCTGT
BMWN1_0094_E03.b : AGCATGGCTACCTGTATGAGCACAACTTTGCCTTCTTCCCTGGTTTCCCCCTGGTCCTGT
OVRM1_0188_D06.b : AGCATGGCTACCTGTATGAGCACAACTTTGCCTTCTTCCCTGGTTTCCCCCTGGTCCTGT
OVRM1_0213_F02.b : AGCATGGCTACCTGTATGAGCACAACTTTGCCTTCTTCCCTGGTTTCCCCCTGGTCCTGT
DCI01_0023_C06.b : AGCATGGCTACCTGTATGAGCACAACTTTGCCTTCTTCCCTGGTTTCCCCCTGGTCCTGT
20110601C-009515 : TGGTGGGGACTGAGTTGCTGAGACCCCTGTGGGGGTTACTGAGCCTACGGAGTTGCCTAC
---------+---------+---------+---------+---------+---------+ 547
AMP01_0050_G05.b : TGGTGGGGACTGAGTTGCTGACACCCCTGTGGGGGTTACTGAGCCTACGGAGTTGCCTAC
BMWN1_0094_E03.b : TGGTGGGGACTGAGTTGCTGAGACCCCTGTGGGGGTTACTGAGCCTACGGAGTTGCCTAC
OVRM1_0188_D06.b : TGGTGGGGACTGAGTTGCTGAGACCCCTGTGGGGGTTACTGAGCCTACGGAGTTGCCTAC
OVRM1_0213_F02.b : TGGTGGGGACTGAGTTGCTGAGACCCCTGTGGGGGTTACTGAGCCTACGGAGTTGCCTAC
DCI01_0023_C06.b : TGGTGGGGACTGAGTTGCTGAGACCCCTGTGGGGGTTACTGAGCCTACGGAGTTGCCTAC
20110601C-009515 : TAATCTCAGTAGCATTGCTCAATTCCTTGTTCTCTGTGCTGGCTGCACTCGCACTTCATG
---------+---------+---------+---------+---------+---------+ 607
AMP01_0050_G05.b : TAATCTCAGTAGCATTGCTCCATTCCTTGTTCTCTGTGCTGGCTGCACTCACACTTCATG
BMWN1_0094_E03.b : TAATCTCAGTAGCATTGCTCAATTCCTTGTTCTCTGTGCTGGCTGCACTCGCACTTCATG
OVRM1_0188_D06.b : TAATCTCAGTAGCATTGCTCAATTCCTTGTTCTCTGTGCTGGCTGCACTCGCACTTCATG
OVRM1_0213_F02.b : TAATCTCAGTAGCATTGCTCAATTCCTTGTTCTCTGTGCTGGCTGCACTCGCACTTCATG
DCI01_0023_C06.b : TAATCTCAGTAGCATTGCTCAATTCCTTGTTCTCTGTGCTGGCTGCACTCGCACTTCATG
20110601C-009515 : ACCTGGGCTGTCTGGTTCTGCACTGTCCCCGCCAGGCCTTTTACGGAGCACTGCTCTTCT
---------+---------+---------+---------+---------+---------+ 667
AMP01_0050_G05.b : ACCTGNGCTGTCTGGTTCTGCACTGTCCCCGCCAGGCCTTTTACGGAGCACTGCTCTTCT
BMWN1_0094_E03.b : ACCTGNGCTGTCTGGTTCTGCACTGTCCCCGCCAGGCCTTTTACGGAGCACTGCTCTTCT
OVRM1_0188_D06.b : ACCTGGGCTGTCTAGTTCTGCACTGTCCCCGCCAGGCCTTTTACGGAGCACTGCTCTTCT
OVRM1_0213_F02.b : ACCTGGGCTGTCTAGTTCTGCACTGTCCCCGCCAGGCCTTTTACGGAGCACTGCTCTTCT
DCI01_0023_C06.b : ACCTGNGCTGTCTGGTTCTGCACTGTCCCCGCCAGGCCTTTTACGGAGCACTGCTCTTCT
20110601C-009515 : GCCTCAGTCCTGCCAATGTCTTCCTGACAGCTGGTTACTCAGAAGCTTTGTTTGCCCTCC
---------+---------+---------+---------+---------+---------+ 727
AMP01_0050_G05.b : GCCTCAGTCCTGCCAATGTCTTCCTGACAGCTGGGTACTCAAAAGCTTTGTTTGCCCTCC
BMWN1_0094_E03.b : GCCTCAGTCCTGCCAATGTCTTCCTGACAGCTGGGTACTCAGAAGCTTTGTTTGCCCTCC
OVRM1_0188_D06.b : GCCTCAGTCCTGCCAATGTCTTCCTGACAGCTGGTTACTCAGAAGCTTTGTTTGCCCTCC
OVRM1_0213_F02.b : GCCTCAGTCCTGCCAATGTCTTCCTGACAGCTGGTTACTCAGAAGCTTTGTTTGCCCTCC
DCI01_0023_C06.b : GCCTCAGTCCTGCCAATGTCTTCCTGACAGCTGGTTACTCAGAAGCTTTGTTTGCCCTCC
20110601C-009515 : TGACATTCAGTGCCATGGCGCAGCTGGAAAGGGGCCGAAGCTGGACTAGTGGACTTCTCT
---------+---------+---------+---------+---------+---------+ 787
AMP01_0050_G05.b : TGACATTCANTGCCATGGCGCANCTGGAAAGGGGCCGAAACTGGACTANTGGACTTCTCT
BMWN1_0094_E03.b : TGACATTCAGTGCCATGGCGCAGCTGGAAAAGGGCCG*AGCTGGACTAGTGGACTTCTCT
OVRM1_0188_D06.b : TGACATTCAGTGCCATGGCGCAGCTGGAAAGGGGCCGAAGCTGGACTAGTGGACTTCTCT
OVRM1_0213_F02.b : TGACATTCAGTGCCATGGCGCAGCTGGAAAGGGGCCGAAGCTGGACTAGTGGACTTCTCC
DCI01_0023_C06.b : TGACATTCAGTGCCATGGCGCAGCTGGAAAGGGGCCG*AGCTGGACTAGTGGACTTCTCT
20110601C-009515 : TTGCCCTTGCCACTGGTGTACGCGCCAATGGGCTGGT*CACGTCGGCTTCCTCGTGCATT
---------+---------+---------+---------+---------+---------+ 846
AMP01_0050_G05.b : TTGCCCTgncactgntgtacgccgccatgggctggtcacgtccgcttctcgtgcatcctc
BMWN1_0094_E03.b : TTGCCttggcactggtgtacgcgccatgggctgggtcacgtcggccttctcgtgcattct
OVRM1_0188_D06.b : TTGCCCTTGCCACTGGTGTACGCGCCAATGGGCTGGTNCACGTCGGCTTCCTCGTgcatt
OVRM1_0213_F02.b : TTGCCCTTGCCACTGGTGTACGCGCCAATGGGCTGGTNCACGTCGGCTTCCTCGTGCATT
DCI01_0023_C06.b : TTGCCCTTGC*ACTGGTGTACGCGCCAATGGGCTGGT*CACGTCGGCTTCCTCGTgcatt
20110601C-009515 : C...........................................................
---------+---------+---------+---------+---------+---------+ 847
AMP01_0050_G05.b : aggccaagcttttctcttctccacgatgcggaatctctgaggcgctcttgagctgatggc
BMWN1_0094_E03.b : cgtgccaaggctttttcctcctctccgatgcggatcctcgaaggccctcttgagctgagg
OVRM1_0188_D06.b : ctcagtg
OVRM1_0213_F02.b : C
DCI01_0023_C06.b : ctcaatgccnaagctttttctcctctctcacgatgcgaaatcttctgaagcagctcttga
20110601C-009515 : ............................................................
---------+---------+---------+---------+---------+---------+ 847
AMP01_0050_G05.b : tcggtgttttgtcantctctcactggcttcccttggctcctccagactaggctatacccg
BMWN1_0094_E03.b : gctcggtgttttggtcatcctccatttgccttcccttggccctttcatacaaggctaacc
OVRM1_0188_D06.b :
OVRM1_0213_F02.b :
DCI01_0023_C06.b : acctgatgggcttcgtgtttttgtcagtcctctcacttggccttccctttggcttctcca
20110601C-009515 : ............................................................
---------+---------+---------+---------+---------+---------+ 847
AMP01_0050_G05.b : tttggggtcaggcccaaccacccctcctaaccctgnttattagctttggacaggctccca
BMWN1_0094_E03.b : cggttcgggtcagggtcacccacccctccctaaccttgtgctttactttgaaaaggcacc
OVRM1_0188_D06.b :
OVRM1_0213_F02.b :
DCI01_0023_C06.b : gtactatgcctaacccagttctggtgttcaggctcaccccacccatccttagccttgctg
20110601C-009515 : ............................................................
---------+---------+---------+---------+---------+---------+ 847
AMP01_0050_G05.b : ctcctaaggaaaaaccccctgggccctgcaaatccccagaaaacgtagcccgggaact
BMWN1_0094_E03.b : agtcctgaggaaagaccacctggtgtccggaacttccctttaaatttctccggactcccg
OVRM1_0188_D06.b :
OVRM1_0213_F02.b :
DCI01_0023_C06.b : cagtaactttgaacaggcctacggagtcccgaagggatgagcaccttgntgcctctgaac
20110601C-009515 : ............................................................
---------+---------+---------+---------+---------+---------+ 847
AMP01_0050_G05.b :
BMWN1_0094_E03.b : ggatgtggttttaaaatagaattagcggggcaattttcgggccccaaggtatggttcgga
OVRM1_0188_D06.b :
OVRM1_0213_F02.b :
DCI01_0023_C06.b : ttcccctattaacgtacgtccgnactctcggaaagttgcctttgaatactgaactaaccg
20110601C-009515 : ............................................................
---------+---------+---------+---------+---------+---------+ 847
AMP01_0050_G05.b :
BMWN1_0094_E03.b : attgaatataacccccgggtttttttgggggaggaaaaaaaaccaacccgcgttcccccc
OVRM1_0188_D06.b :
OVRM1_0213_F02.b :
DCI01_0023_C06.b : ggccaatttcccggtgcccaaggcgtatgggtccgggaattgtacacgtgacccaccggt
20110601C-009515 : ............................................................
---------+---------+---------+---------+---------+---------+ 847
AMP01_0050_G05.b :
BMWN1_0094_E03.b : gggttttcgccccaggcgggtgggggagccccccctttgcccccctatgtttttttaaac
OVRM1_0188_D06.b :
OVRM1_0213_F02.b :
DCI01_0023_C06.b : cttccttccttggtgcaagaaaaaataaacctaaaaccgcccgttcccccccgggtgttc
20110601C-009515 : ............................................................
---------+---------+---------+---------+---------+---------+ 847
AMP01_0050_G05.b :
BMWN1_0094_E03.b : acaaaagggggtttttttnnnnnttttttttttcctttctttctctttcgggaatattgt
OVRM1_0188_D06.b :
OVRM1_0213_F02.b :
DCI01_0023_C06.b : gcacccaaaggcggttggaggggaggcggcccccttgttccccccctgggtttctcttcc
20110601C-009515 : ............................................................
---------+---------+---------+---------+---------+---------+ 847
AMP01_0050_G05.b :
BMWN1_0094_E03.b : tctcggcat
OVRM1_0188_D06.b :
OVRM1_0213_F02.b :
DCI01_0023_C06.b : aaaacagaataagtgtgttttaaatacaaa