[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-010997
Length:
1,266
Sequence:
[FASTA format sequence]
CTCTCGCCAC CCACGCCCGC CCCCAGCCGC CGGCCCTTTC CCCGCGCTGC CGCCGCCGCC
GCCGCCGCAG TCAGCTCGGG CGCCCCGGCA GCATCCGACC GCTCAGCCCA GTGCCACCGC
GCCAGCGCCA GCCCGCCATG GAGCCCCGAG CCCCCCGCCG CCGCCACACG CTCCAGCGCG
GCTATGCCGT GACGCGGATC CCCCATCTCA ACAAGGACTT GGCTTTCACC CTGGAAGAGA
GGCAGCAGTT GAACATTCAT GGATTGTTAC CACCTTGCTT CATCAGTCAG GACATCCAGG
TCCTTAGAGT AATTAAAAAT TTTGAGCGTC TGAACTCTGA TTTTGACAGG TATCTTCTCT
TAATGGACCT TCAAGATAGA AATGAAAAGC TCTTTTATAA AGTGCTAATG TCTGACATTG
AGAAATTCAT GCCTATCGTT TATACTCCCA CTGTGGGTCT GGCTTGCCAG CAATACAGTT
TAGCATTTCG GAAGCCAAGA GGTCTCTTTA TTAGTATCCA TGATCGAGGG CATGTTGCTT
CAGTTCTTAA TGCATGGCCA GAAGATGTCA TCAAGGCTGT CGTGGTGACT GATGGAGAAC
GTATTCTTGG CCTGGGAGAC CTTGGCTGTA ACGGGATGGG CATCCCTGTG GGTAAACTGG
CACTCTATAC AGCATGTGGA GGGGTAAATC CCCAAGAATG TCTGCCTGTC ATCCTGGACG
TGGGAACAGA AAATGAGGAG TTACTTAAAG ATCCACTGTA CATTGGACTG CGGCAGAGAA
GAGTGAGAGG TCCTGAATAT GATGATTTTT TGGATGAATT CATGGAGGCA GTTTCTTCCA
AGTATGGCAT GAATTGCCTT ATTCAGTTTG AAGATTTTGC CAATATAAAT GCATTTCGTC
ACCTGATTGT TATGGCCATG GAAAAAGAAG GTGTCCCAAA AGAGAAAGCC ATAAAGAAGA
TATGGTTGGT TGACTCANAA GGATTAATAG TTAAGGGACG GGCTGCCTTA ACAAACGAGA
AAGAGGAATT TGCCCATGAA CATGAAGAAA TGAAGAACCT AGAAGCCATT GTTCAAGATA
TAAAACCAAC AGCCCTCATA GGAGTTGCTG CGATTGGTGG TGCATTTTCA GAACAATTCT
CAAAGACATG GCTGCCTTTC ATGAAACGCC TATTATTTTT GCTTTGAGTA ATCCAACAGC
AAAGCAGAAT GTACTGCAAA GCAGTGCTAC ACACTGACAC NAGGTCGTGC AATTTTTGCC
AGTGGC
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
ME1 | NADP-dependent malic enzyme [Homo sapiens]. | 570 | e-168 | O | ||
ME3 | NADP-dependent malic enzyme, mitochondrial precursor [Homo sapiens]. | 463 | e-136 | O | ||
ME3 | NADP-dependent malic enzyme, mitochondrial precursor [Homo sapiens]. | 463 | e-136 | O | ||
ME3 | NADP-dependent malic enzyme, mitochondrial precursor [Homo sapiens]. | 463 | e-136 | O | ||
ME2 | NAD-dependent malic enzyme, mitochondrial isoform 1 precursor [Homo sapiens]. | 323 | 3e-88 | O | ||
ME2 | NAD-dependent malic enzyme, mitochondrial isoform 2 precursor [Homo sapiens]. | 323 | 3e-88 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
Me1 | NADP-dependent malic enzyme isoform 1 [Mus musculus]. | 565 | e-167 | O | ||
Me1 | NADP-dependent malic enzyme isoform 2 [Mus musculus]. | 520 | e-153 | O | ||
Me3 | NADP-dependent malic enzyme, mitochondrial precursor [Mus musculus]. | 469 | e-138 | O | ||
Me2 | NAD-dependent malic enzyme, mitochondrial precursor [Mus musculus]. | 323 | 2e-88 | O | ||
LOC100505264 | PREDICTED: NAD-dependent malic enzyme, mitochondrial-like [Mus musculus]. | 296 | 9e-85 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
ME1 | PREDICTED: similar to NADP-dependent malic enzyme (NADP-ME) (Malic enzyme 1) [Canis familiaris]. | 476 | e-141 | |||
LOC485151 | PREDICTED: similar to malic enzyme 3, NADP(+)-dependent, mitochondrial isoform 2 [Canis familiaris]. | 469 | e-137 | O | ||
LOC485151 | PREDICTED: similar to malic enzyme 3, NADP(+)-dependent, mitochondrial isoform 5 [Canis familiaris]. | 441 | e-125 | O | ||
LOC485151 | PREDICTED: similar to malic enzyme 3, NADP(+)-dependent, mitochondrial isoform 1 [Canis familiaris]. | 432 | e-126 | O | ||
LOC485151 | PREDICTED: similar to malic enzyme 3, NADP(+)-dependent, mitochondrial isoform 7 [Canis familiaris]. | 430 | e-126 | O | ||
LOC485151 | PREDICTED: similar to malic enzyme 3, NADP(+)-dependent, mitochondrial isoform 6 [Canis familiaris]. | 427 | e-124 | O | ||
LOC485151 | PREDICTED: similar to malic enzyme 3, NADP(+)-dependent, mitochondrial isoform 3 [Canis familiaris]. | 427 | e-120 | O | ||
LOC476198 | PREDICTED: similar to NAD-dependent malic enzyme, mitochondrial precursor (NAD-ME) (Malic enzyme 2) isoform 2 [Canis familiaris]. | 325 | 6e-89 | O | ||
LOC476198 | PREDICTED: similar to NAD-dependent malic enzyme, mitochondrial precursor (NAD-ME) (Malic enzyme 2) isoform 1 [Canis familiaris]. | 266 | 2e-71 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
ME3 | NADP-dependent malic enzyme, mitochondrial [Bos taurus]. | 466 | e-143 | O | ||
ME1 | NADP-dependent malic enzyme [Bos taurus]. | 452 | e-127 | O | ||
ME2 | NAD-dependent malic enzyme, mitochondrial [Bos taurus]. | 327 | 1e-89 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
ME1 | PREDICTED: NADP-dependent malic enzyme [Sus scrofa]. | 545 | e-163 | O | ||
ME3 | PREDICTED: LOW QUALITY PROTEIN: NADP-dependent malic enzyme, mitochondrial [Sus scrofa]. | 409 | e-114 | O | ||
ME2 | PREDICTED: NAD-dependent malic enzyme, mitochondrial [Sus scrofa]. | 324 | 6e-89 | O |
|
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVRM1_0151_G04.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PCT01_0025_B09.b :
20110601C-010997 : ..CTCTCGCCACCCACGCCCGCCCCCAGCCGCCGGCCCTTTCCCCGCGCTGCCGCCGCCG
---------+---------+---------+---------+---------+---------+ 58
LVRM1_0151_G04.b : xxCTCTCGCCACCCACGCCCGCCCCCAGCCGCCGGCCCTTTCCCCGcgctgccgccgccg
PCT01_0025_B09.b :
20110601C-010997 : CCGCCGCCGCAGTCAGCTCGGGCGCCCCGGCAGCATCCGACCGCTCAGCCCAGTGCCACC
---------+---------+---------+---------+---------+---------+ 118
LVRM1_0151_G04.b : ccgccgccgcAGTCAGCTCGGGCGCCCCGGCAGCATCCGACCGCTCAGCCCAGTGCCACC
PCT01_0025_B09.b :
20110601C-010997 : GCGCCAGCGCCAGCCCGCCATGGAGCCCCGAGCCCCCCGCCGCCGCCACACGCTCCAGCG
---------+---------+---------+---------+---------+---------+ 178
LVRM1_0151_G04.b : GCGCCAGCGCCAGCCCGCCATGGAGCCCCGAGCCCCCCGCCGCCGCCACACGCTCCAGCG
PCT01_0025_B09.b :
20110601C-010997 : CGGCTATGCCGTGACGCGGATCCCCCATCTCAACAAGGACTTGGCTTTCACCCTGGAAGA
---------+---------+---------+---------+---------+---------+ 238
LVRM1_0151_G04.b : CGGCTATGCCGTGACGCGGATCCCCCATCTCAACAAGGACTTGGCTTTCACCCTGGAAGA
PCT01_0025_B09.b :
20110601C-010997 : GAGGCAGCAGTTGAACATTCATGGATTGTTACCACCTTGCTTCATCAGTCAGGACATCCA
---------+---------+---------+---------+---------+---------+ 298
LVRM1_0151_G04.b : GAGGCAGCAGTTGAACATTCATGGATTGTTACCACCTTGCTTCATCAGTCAGGACATCCA
PCT01_0025_B09.b :
20110601C-010997 : GGTCCTTAGAGTAATTAAAAATTTTGAGCGTCTGAACTCTGATTTTGACAGGTATCTTCT
---------+---------+---------+---------+---------+---------+ 358
LVRM1_0151_G04.b : GGTCCTTAGAGTAATTAAAAATTTTGAGCGTCTGAACTCTGATTTTGACAGGTATCTTCT
PCT01_0025_B09.b : nnnaagatatnnnn
20110601C-010997 : CTTAATGGACCTTCAAGATAGAAATGAAAAGCTCTTTTATAAAGTGCTAATGTCTGACAT
---------+---------+---------+---------+---------+---------+ 418
LVRM1_0151_G04.b : CTTAATGGACCTTCAAGATAGAAATGAAAAGCTCTTTTATAAAGTGCTAATGTCTGACAT
PCT01_0025_B09.b : nnncctgagttggcantgggaanaatganAGCTCTTTTATAAAGTGCTAATGTCTGACAT
20110601C-010997 : TGAGAAATTCATGCCTATCGTTTATACTCCCACTGTGGGTCTGGCTTGCCAGCAATACAG
---------+---------+---------+---------+---------+---------+ 478
LVRM1_0151_G04.b : TGAGAAATTCATGCCTATCGTTTATACTCCCACTGTGGGTCTGGCTTGCCAGCAATACAG
PCT01_0025_B09.b : TGAGAAATTCATGCCTATCGTTTATACTCCCACTGTGGGTCTGGCTTGCCAGCAATACAG
20110601C-010997 : TTTAGCATTTCGGAAGCCAAGAGGTCTCTTTATTAGTATCCATGATCGAGGGCATGTTGC
---------+---------+---------+---------+---------+---------+ 538
LVRM1_0151_G04.b : TTTAGCATTTCGGAAGCCAAGAGGTCTCTTTATTAGTATCCATGATCGAGGGCATGTTGC
PCT01_0025_B09.b : TTTAGCATTTCGGAAGCCAAGAGGTCTCTTTATTAGTATCCATGATCGAGGGCATGTTGC
20110601C-010997 : TTCAGTTCTTAATGCATGGCCAGAAGATGTCATCAAGGCTGTCGTGGTGACTGATGGAGA
---------+---------+---------+---------+---------+---------+ 598
LVRM1_0151_G04.b : TTCAGTTCTTAATGCATGGCCAGAAGATGTCATCAAGGCTGTCGTGGTGACTGATGGAGA
PCT01_0025_B09.b : TTCAGTTCTTAATGCATGGCCAGAAGATGTCATCAAGGCTGTCGTGGTGACTGATGGAGA
20110601C-010997 : ACGTATTCTTGGCCTGGGAGACCTTGGCTGTAACGGGATGGGCATCCCTGTGGGTAAACT
---------+---------+---------+---------+---------+---------+ 658
LVRM1_0151_G04.b : ACGTATTCTTGGCCTGGGAGACCTTGGCTGTAACGGGATGGGCATCCCTGTGGGTAAAAT
PCT01_0025_B09.b : ACGTATTCTTGGCCTGGGAGACCTTGGCTGTAACGGGATGGGCATCCCTGTGGGTAAACT
20110601C-010997 : GGCACTCTATACAGCATGTGGA*GGGGTAAATCCCCAAGAATGTCTGCCTGTCATCCTGG
---------+---------+---------+---------+---------+---------+ 717
LVRM1_0151_G04.b : GGCACTCTATACAGCATGTGGAGGGGGTAAACCCCCAAGAATGTCTGCCTGTCATCCTGG
PCT01_0025_B09.b : GGCACTCTATACAGCATGTGGA*GGGGTAAATCCCCAAGAATGTCTGCCTGTCATCCTGG
20110601C-010997 : ACGTGGGAACAGAAAATGAGGAGTTACTTAAAGATCCACTGTACATTGGACTGCGGCAGA
---------+---------+---------+---------+---------+---------+ 777
LVRM1_0151_G04.b : ACGTGGGAACAGAATATGAag
PCT01_0025_B09.b : ACGTGGGAACAGAAAATGAGGAGTTACTTAAAGATCCACTGTACATTGGACTGCGGCAGA
20110601C-010997 : GAAGAGTGAGAGGTCCTGAATATGATGATTTTTTGGATGAATTCATGGAGGCAGTTTCTT
---------+---------+---------+---------+---------+---------+ 837
LVRM1_0151_G04.b :
PCT01_0025_B09.b : GAAGAGTGAGAGGTCCTGAATATGATGATTTTTTGGATGAATTCATGGAGGCAGTTTCTT
20110601C-010997 : CCAAGTATGGCATGAATTGCCTTATTCAGTTTGAAGATTTTGCCAATATAAATGCATTTC
---------+---------+---------+---------+---------+---------+ 897
LVRM1_0151_G04.b :
PCT01_0025_B09.b : CCAAGTATGGCATGAATTGCCTTATTCAGTTTGAAGATTTTGCCAATATAAATGCATTTC
20110601C-010997 : GTCACCTGATTGTTATGGCCATGGAAAAAGAAGGTGTCCCAAAAGAGAAAGCCATAAAGA
---------+---------+---------+---------+---------+---------+ 957
LVRM1_0151_G04.b :
PCT01_0025_B09.b : GTCACCTGATTGTTATGGCCATGGAAAAAGAAGGTGTCCCAAAAGAGAAAGCCATAAAGA
20110601C-010997 : AGATATGGTTGGTTGACTCANAAGGATTAATAGTTAAGGGACGGGCTGCCTTAACAAACG
---------+---------+---------+---------+---------+---------+ 1017
LVRM1_0151_G04.b :
PCT01_0025_B09.b : AGATATGGTTGGTTGACTCANAAGGATTAATAGTTAAGGGACGGGCTGCCTTAACAAACG
20110601C-010997 : AGAAAGAGGAATTTGCCCATGAACATGAAGAAATGAAGAACCTAGAAGCCATTGTTCAAG
---------+---------+---------+---------+---------+---------+ 1077
LVRM1_0151_G04.b :
PCT01_0025_B09.b : AGAAAGAGGAATTTGCCCATGAACATGAAGAAATGAAGAACCTAGAAGCCATTGTTCAAG
20110601C-010997 : ATATAAAACCAACAGCCCTCATAGGAGTTGCTGCGATTGGTGGTGCATTTTCAGAACAAT
---------+---------+---------+---------+---------+---------+ 1137
LVRM1_0151_G04.b :
PCT01_0025_B09.b : ATATAAAACCAACAGCCCTCATAGGAGTTGCTGCGATTGGTGGTGCATTTTCAGAACAAT
20110601C-010997 : TCTCAAAGACATGGCTGCCTTTCATGAAACGCCTATTATTTTTGCTTTGAGTAATCCAAC
---------+---------+---------+---------+---------+---------+ 1197
LVRM1_0151_G04.b :
PCT01_0025_B09.b : TCTCAAAGACATGGCTGCCTTTCATGAAACGCCTATTATTTTTGCTTTGAGTAATCCAAC
20110601C-010997 : AGCAAAGCAGAATGTACTGCAAAGCAGTGCTACACACTGACACNAGGTCGTGCAATTTTT
---------+---------+---------+---------+---------+---------+ 1257
LVRM1_0151_G04.b :
PCT01_0025_B09.b : AGCAAAGCAGAATGTACTGCAAAGCAGTGCTACACACTGACACNAGGTCGTGCAATTTTT
20110601C-010997 : GCCAGTGGC...................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : GCCAGTGGCagtctttttgatccngtcactcttccaagtgggcagaccctgtatcctggc
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : caaggcaacaattcctatgtgtttcctgnagntgccccttggtgtggtgcctgtggactg
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : nagcttatcaggaataaaatctttctcctactgctgaggttatagctcaacaggatcaaa
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : aaaaccttggaagaaggcgggtttatcctcctcgaaaccattaaaaatgtttctcgaaat
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : ccccaaaaaattggggaaatgctccccaaaaaaaagcccccttttccggaaccccaaaag
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : aaaaattgtcccccccaaagtacccggtttaacaaatcccccgggggtttttggcgaaag
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : ccccaaaaaacacaaattttaaaaggaaacccctttttcccccctgggaggagggtcttt
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : ttttaaagggggtttttagtcagggggaaaaaatcctccccaacttgtggatttttttgg
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : gaaacaaaaaagcctctttttaggggggtattccccccccgggcgggcccttaaagaaaa
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : aagttaa