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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-010997

Length: 1,266

Sequence [FASTA format sequence]
CTCTCGCCAC CCACGCCCGC CCCCAGCCGC CGGCCCTTTC CCCGCGCTGC CGCCGCCGCC
GCCGCCGCAG TCAGCTCGGG CGCCCCGGCA GCATCCGACC GCTCAGCCCA GTGCCACCGC
GCCAGCGCCA GCCCGCCATG GAGCCCCGAG CCCCCCGCCG CCGCCACACG CTCCAGCGCG
GCTATGCCGT GACGCGGATC CCCCATCTCA ACAAGGACTT GGCTTTCACC CTGGAAGAGA
GGCAGCAGTT GAACATTCAT GGATTGTTAC CACCTTGCTT CATCAGTCAG GACATCCAGG
TCCTTAGAGT AATTAAAAAT TTTGAGCGTC TGAACTCTGA TTTTGACAGG TATCTTCTCT
TAATGGACCT TCAAGATAGA AATGAAAAGC TCTTTTATAA AGTGCTAATG TCTGACATTG
AGAAATTCAT GCCTATCGTT TATACTCCCA CTGTGGGTCT GGCTTGCCAG CAATACAGTT
TAGCATTTCG GAAGCCAAGA GGTCTCTTTA TTAGTATCCA TGATCGAGGG CATGTTGCTT
CAGTTCTTAA TGCATGGCCA GAAGATGTCA TCAAGGCTGT CGTGGTGACT GATGGAGAAC
GTATTCTTGG CCTGGGAGAC CTTGGCTGTA ACGGGATGGG CATCCCTGTG GGTAAACTGG
CACTCTATAC AGCATGTGGA GGGGTAAATC CCCAAGAATG TCTGCCTGTC ATCCTGGACG
TGGGAACAGA AAATGAGGAG TTACTTAAAG ATCCACTGTA CATTGGACTG CGGCAGAGAA
GAGTGAGAGG TCCTGAATAT GATGATTTTT TGGATGAATT CATGGAGGCA GTTTCTTCCA
AGTATGGCAT GAATTGCCTT ATTCAGTTTG AAGATTTTGC CAATATAAAT GCATTTCGTC
ACCTGATTGT TATGGCCATG GAAAAAGAAG GTGTCCCAAA AGAGAAAGCC ATAAAGAAGA
TATGGTTGGT TGACTCANAA GGATTAATAG TTAAGGGACG GGCTGCCTTA ACAAACGAGA
AAGAGGAATT TGCCCATGAA CATGAAGAAA TGAAGAACCT AGAAGCCATT GTTCAAGATA
TAAAACCAAC AGCCCTCATA GGAGTTGCTG CGATTGGTGG TGCATTTTCA GAACAATTCT
CAAAGACATG GCTGCCTTTC ATGAAACGCC TATTATTTTT GCTTTGAGTA ATCCAACAGC
AAAGCAGAAT GTACTGCAAA GCAGTGCTAC ACACTGACAC NAGGTCGTGC AATTTTTGCC
AGTGGC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinME1NADP-dependent malic enzyme [Homo sapiens]. 570e-168O
Contig/Assembly ProteinME3NADP-dependent malic enzyme, mitochondrial precursor [Homo sapiens]. 463e-136O
Contig/Assembly ProteinME3NADP-dependent malic enzyme, mitochondrial precursor [Homo sapiens]. 463e-136O
Contig/Assembly ProteinME3NADP-dependent malic enzyme, mitochondrial precursor [Homo sapiens]. 463e-136O
Contig/Assembly ProteinME2NAD-dependent malic enzyme, mitochondrial isoform 1 precursor [Homo sapiens]. 3233e-88O
Contig/Assembly ProteinME2NAD-dependent malic enzyme, mitochondrial isoform 2 precursor [Homo sapiens]. 3233e-88O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMe1NADP-dependent malic enzyme isoform 1 [Mus musculus]. 565e-167O
Contig/Assembly ProteinMe1NADP-dependent malic enzyme isoform 2 [Mus musculus]. 520e-153O
Contig/Assembly ProteinMe3NADP-dependent malic enzyme, mitochondrial precursor [Mus musculus]. 469e-138O
Contig/Assembly ProteinMe2NAD-dependent malic enzyme, mitochondrial precursor [Mus musculus]. 3232e-88O
Contig/Assembly ProteinLOC100505264PREDICTED: NAD-dependent malic enzyme, mitochondrial-like [Mus musculus]. 2969e-85O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinME1PREDICTED: similar to NADP-dependent malic enzyme (NADP-ME) (Malic enzyme 1) [Canis familiaris]. 476e-141
Contig/Assembly ProteinLOC485151PREDICTED: similar to malic enzyme 3, NADP(+)-dependent, mitochondrial isoform 2 [Canis familiaris]. 469e-137O
Contig/Assembly ProteinLOC485151PREDICTED: similar to malic enzyme 3, NADP(+)-dependent, mitochondrial isoform 5 [Canis familiaris]. 441e-125O
Contig/Assembly ProteinLOC485151PREDICTED: similar to malic enzyme 3, NADP(+)-dependent, mitochondrial isoform 1 [Canis familiaris]. 432e-126O
Contig/Assembly ProteinLOC485151PREDICTED: similar to malic enzyme 3, NADP(+)-dependent, mitochondrial isoform 7 [Canis familiaris]. 430e-126O
Contig/Assembly ProteinLOC485151PREDICTED: similar to malic enzyme 3, NADP(+)-dependent, mitochondrial isoform 6 [Canis familiaris]. 427e-124O
Contig/Assembly ProteinLOC485151PREDICTED: similar to malic enzyme 3, NADP(+)-dependent, mitochondrial isoform 3 [Canis familiaris]. 427e-120O
Contig/Assembly ProteinLOC476198PREDICTED: similar to NAD-dependent malic enzyme, mitochondrial precursor (NAD-ME) (Malic enzyme 2) isoform 2 [Canis familiaris]. 3256e-89O
Contig/Assembly ProteinLOC476198PREDICTED: similar to NAD-dependent malic enzyme, mitochondrial precursor (NAD-ME) (Malic enzyme 2) isoform 1 [Canis familiaris]. 2662e-71O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinME3NADP-dependent malic enzyme, mitochondrial [Bos taurus]. 466e-143O
Contig/Assembly ProteinME1NADP-dependent malic enzyme [Bos taurus]. 452e-127O
Contig/Assembly ProteinME2NAD-dependent malic enzyme, mitochondrial [Bos taurus]. 3271e-89O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinME1PREDICTED: NADP-dependent malic enzyme [Sus scrofa]. 545e-163O
Contig/Assembly ProteinME3PREDICTED: LOW QUALITY PROTEIN: NADP-dependent malic enzyme, mitochondrial [Sus scrofa]. 409e-114O
Contig/Assembly ProteinME2PREDICTED: NAD-dependent malic enzyme, mitochondrial [Sus scrofa]. 3246e-89O


Assembly Members: 2      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
LVRM10151G04LVRM1_0151_G04.bBP453233 AK233460
PCT010025B09PCT01_0025_B09.bFS696295 

  

Alignment:      TOP

20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVRM1_0151_G04.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PCT01_0025_B09.b :
20110601C-010997 : ..CTCTCGCCACCCACGCCCGCCCCCAGCCGCCGGCCCTTTCCCCGCGCTGCCGCCGCCG
---------+---------+---------+---------+---------+---------+ 58
LVRM1_0151_G04.b : xxCTCTCGCCACCCACGCCCGCCCCCAGCCGCCGGCCCTTTCCCCGcgctgccgccgccg
PCT01_0025_B09.b :
20110601C-010997 : CCGCCGCCGCAGTCAGCTCGGGCGCCCCGGCAGCATCCGACCGCTCAGCCCAGTGCCACC
---------+---------+---------+---------+---------+---------+ 118
LVRM1_0151_G04.b : ccgccgccgcAGTCAGCTCGGGCGCCCCGGCAGCATCCGACCGCTCAGCCCAGTGCCACC
PCT01_0025_B09.b :
20110601C-010997 : GCGCCAGCGCCAGCCCGCCATGGAGCCCCGAGCCCCCCGCCGCCGCCACACGCTCCAGCG
---------+---------+---------+---------+---------+---------+ 178
LVRM1_0151_G04.b : GCGCCAGCGCCAGCCCGCCATGGAGCCCCGAGCCCCCCGCCGCCGCCACACGCTCCAGCG
PCT01_0025_B09.b :
20110601C-010997 : CGGCTATGCCGTGACGCGGATCCCCCATCTCAACAAGGACTTGGCTTTCACCCTGGAAGA
---------+---------+---------+---------+---------+---------+ 238
LVRM1_0151_G04.b : CGGCTATGCCGTGACGCGGATCCCCCATCTCAACAAGGACTTGGCTTTCACCCTGGAAGA
PCT01_0025_B09.b :
20110601C-010997 : GAGGCAGCAGTTGAACATTCATGGATTGTTACCACCTTGCTTCATCAGTCAGGACATCCA
---------+---------+---------+---------+---------+---------+ 298
LVRM1_0151_G04.b : GAGGCAGCAGTTGAACATTCATGGATTGTTACCACCTTGCTTCATCAGTCAGGACATCCA
PCT01_0025_B09.b :
20110601C-010997 : GGTCCTTAGAGTAATTAAAAATTTTGAGCGTCTGAACTCTGATTTTGACAGGTATCTTCT
---------+---------+---------+---------+---------+---------+ 358
LVRM1_0151_G04.b : GGTCCTTAGAGTAATTAAAAATTTTGAGCGTCTGAACTCTGATTTTGACAGGTATCTTCT
PCT01_0025_B09.b : nnnaagatatnnnn
20110601C-010997 : CTTAATGGACCTTCAAGATAGAAATGAAAAGCTCTTTTATAAAGTGCTAATGTCTGACAT
---------+---------+---------+---------+---------+---------+ 418
LVRM1_0151_G04.b : CTTAATGGACCTTCAAGATAGAAATGAAAAGCTCTTTTATAAAGTGCTAATGTCTGACAT
PCT01_0025_B09.b : nnncctgagttggcantgggaanaatganAGCTCTTTTATAAAGTGCTAATGTCTGACAT
20110601C-010997 : TGAGAAATTCATGCCTATCGTTTATACTCCCACTGTGGGTCTGGCTTGCCAGCAATACAG
---------+---------+---------+---------+---------+---------+ 478
LVRM1_0151_G04.b : TGAGAAATTCATGCCTATCGTTTATACTCCCACTGTGGGTCTGGCTTGCCAGCAATACAG
PCT01_0025_B09.b : TGAGAAATTCATGCCTATCGTTTATACTCCCACTGTGGGTCTGGCTTGCCAGCAATACAG
20110601C-010997 : TTTAGCATTTCGGAAGCCAAGAGGTCTCTTTATTAGTATCCATGATCGAGGGCATGTTGC
---------+---------+---------+---------+---------+---------+ 538
LVRM1_0151_G04.b : TTTAGCATTTCGGAAGCCAAGAGGTCTCTTTATTAGTATCCATGATCGAGGGCATGTTGC
PCT01_0025_B09.b : TTTAGCATTTCGGAAGCCAAGAGGTCTCTTTATTAGTATCCATGATCGAGGGCATGTTGC
20110601C-010997 : TTCAGTTCTTAATGCATGGCCAGAAGATGTCATCAAGGCTGTCGTGGTGACTGATGGAGA
---------+---------+---------+---------+---------+---------+ 598
LVRM1_0151_G04.b : TTCAGTTCTTAATGCATGGCCAGAAGATGTCATCAAGGCTGTCGTGGTGACTGATGGAGA
PCT01_0025_B09.b : TTCAGTTCTTAATGCATGGCCAGAAGATGTCATCAAGGCTGTCGTGGTGACTGATGGAGA
20110601C-010997 : ACGTATTCTTGGCCTGGGAGACCTTGGCTGTAACGGGATGGGCATCCCTGTGGGTAAACT
---------+---------+---------+---------+---------+---------+ 658
LVRM1_0151_G04.b : ACGTATTCTTGGCCTGGGAGACCTTGGCTGTAACGGGATGGGCATCCCTGTGGGTAAAAT
PCT01_0025_B09.b : ACGTATTCTTGGCCTGGGAGACCTTGGCTGTAACGGGATGGGCATCCCTGTGGGTAAACT
20110601C-010997 : GGCACTCTATACAGCATGTGGA*GGGGTAAATCCCCAAGAATGTCTGCCTGTCATCCTGG
---------+---------+---------+---------+---------+---------+ 717
LVRM1_0151_G04.b : GGCACTCTATACAGCATGTGGAGGGGGTAAACCCCCAAGAATGTCTGCCTGTCATCCTGG
PCT01_0025_B09.b : GGCACTCTATACAGCATGTGGA*GGGGTAAATCCCCAAGAATGTCTGCCTGTCATCCTGG
20110601C-010997 : ACGTGGGAACAGAAAATGAGGAGTTACTTAAAGATCCACTGTACATTGGACTGCGGCAGA
---------+---------+---------+---------+---------+---------+ 777
LVRM1_0151_G04.b : ACGTGGGAACAGAATATGAag
PCT01_0025_B09.b : ACGTGGGAACAGAAAATGAGGAGTTACTTAAAGATCCACTGTACATTGGACTGCGGCAGA
20110601C-010997 : GAAGAGTGAGAGGTCCTGAATATGATGATTTTTTGGATGAATTCATGGAGGCAGTTTCTT
---------+---------+---------+---------+---------+---------+ 837
LVRM1_0151_G04.b :
PCT01_0025_B09.b : GAAGAGTGAGAGGTCCTGAATATGATGATTTTTTGGATGAATTCATGGAGGCAGTTTCTT
20110601C-010997 : CCAAGTATGGCATGAATTGCCTTATTCAGTTTGAAGATTTTGCCAATATAAATGCATTTC
---------+---------+---------+---------+---------+---------+ 897
LVRM1_0151_G04.b :
PCT01_0025_B09.b : CCAAGTATGGCATGAATTGCCTTATTCAGTTTGAAGATTTTGCCAATATAAATGCATTTC
20110601C-010997 : GTCACCTGATTGTTATGGCCATGGAAAAAGAAGGTGTCCCAAAAGAGAAAGCCATAAAGA
---------+---------+---------+---------+---------+---------+ 957
LVRM1_0151_G04.b :
PCT01_0025_B09.b : GTCACCTGATTGTTATGGCCATGGAAAAAGAAGGTGTCCCAAAAGAGAAAGCCATAAAGA
20110601C-010997 : AGATATGGTTGGTTGACTCANAAGGATTAATAGTTAAGGGACGGGCTGCCTTAACAAACG
---------+---------+---------+---------+---------+---------+ 1017
LVRM1_0151_G04.b :
PCT01_0025_B09.b : AGATATGGTTGGTTGACTCANAAGGATTAATAGTTAAGGGACGGGCTGCCTTAACAAACG
20110601C-010997 : AGAAAGAGGAATTTGCCCATGAACATGAAGAAATGAAGAACCTAGAAGCCATTGTTCAAG
---------+---------+---------+---------+---------+---------+ 1077
LVRM1_0151_G04.b :
PCT01_0025_B09.b : AGAAAGAGGAATTTGCCCATGAACATGAAGAAATGAAGAACCTAGAAGCCATTGTTCAAG
20110601C-010997 : ATATAAAACCAACAGCCCTCATAGGAGTTGCTGCGATTGGTGGTGCATTTTCAGAACAAT
---------+---------+---------+---------+---------+---------+ 1137
LVRM1_0151_G04.b :
PCT01_0025_B09.b : ATATAAAACCAACAGCCCTCATAGGAGTTGCTGCGATTGGTGGTGCATTTTCAGAACAAT
20110601C-010997 : TCTCAAAGACATGGCTGCCTTTCATGAAACGCCTATTATTTTTGCTTTGAGTAATCCAAC
---------+---------+---------+---------+---------+---------+ 1197
LVRM1_0151_G04.b :
PCT01_0025_B09.b : TCTCAAAGACATGGCTGCCTTTCATGAAACGCCTATTATTTTTGCTTTGAGTAATCCAAC
20110601C-010997 : AGCAAAGCAGAATGTACTGCAAAGCAGTGCTACACACTGACACNAGGTCGTGCAATTTTT
---------+---------+---------+---------+---------+---------+ 1257
LVRM1_0151_G04.b :
PCT01_0025_B09.b : AGCAAAGCAGAATGTACTGCAAAGCAGTGCTACACACTGACACNAGGTCGTGCAATTTTT
20110601C-010997 : GCCAGTGGC...................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : GCCAGTGGCagtctttttgatccngtcactcttccaagtgggcagaccctgtatcctggc
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : caaggcaacaattcctatgtgtttcctgnagntgccccttggtgtggtgcctgtggactg
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : nagcttatcaggaataaaatctttctcctactgctgaggttatagctcaacaggatcaaa
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : aaaaccttggaagaaggcgggtttatcctcctcgaaaccattaaaaatgtttctcgaaat
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : ccccaaaaaattggggaaatgctccccaaaaaaaagcccccttttccggaaccccaaaag
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : aaaaattgtcccccccaaagtacccggtttaacaaatcccccgggggtttttggcgaaag
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : ccccaaaaaacacaaattttaaaaggaaacccctttttcccccctgggaggagggtcttt
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : ttttaaagggggtttttagtcagggggaaaaaatcctccccaacttgtggatttttttgg
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : gaaacaaaaaagcctctttttaggggggtattccccccccgggcgggcccttaaagaaaa
20110601C-010997 : ............................................................
---------+---------+---------+---------+---------+---------+ 1266
LVRM1_0151_G04.b :
PCT01_0025_B09.b : aagttaa