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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20110601C-012169

Length: 999

Sequence [FASTA format sequence]
GGTTTTACAG CCTGCCTCTG ACACCTGCGC GACTTTCGTC TCTGCCCACT CCTGATAAAG
CGCACCAGCG AGCAGCATGG CTACCAAATG TGGGAAGTGT GGACCTGGCT ACCCTACCCC
CCTGGAGGCC ATGAAAGGTA AGTTCGAGAA GACAGATCCA GCATCCCCCG GAAGGGAAGT
AGGCAAGCCA TTGCTGGCAC GTCCTGCACC CCGACTGCCT GCCCTCTACC CTCCAGGACC
CAGGGAGGAG ATTGTCTACC TGCCCTGCAT TTACCGAAAC ACAAGCACCG AGGCCCCGGA
TTATCTGGCC ACTGTGGATG TTGACCCTAA GTCTCCCCAG TATTGCCAGG TCATCCACCG
GCTGCCCATG CCCAACATGA AGGACGAGCT GCATCACTCA GGATGGAACA CCTGCAGCAG
CTGCTTCGGA GACAGCACCA AGTCACGCAC CAAGCTGATG CTGCCCTGCC TCATCTCCTC
CCGAATTTAT GTGGTGGACG TGGGCACCGA ACCCCGTGCC CCAAAGCTGC ACAAGGTCAT
CGAGCCCCAG GACATCCATG CCAAGTGTGA CCTGGGCTAC CTACACACCA GCCACTGCCT
GGCCAGTGGG GAGGTGATGA TCAGTGCCCT GGGAGATCCC AAGGGCAATG GCAAAGGGGG
GTTTGTGCTG CTGGATGGAG AGACCTTTGA GGTGAAGGGG ACATGGGAGA GGCCTGGAGG
TGCTGCTCCC TTGGGCTATG ACTTCTGGTA CCAGCCTCGA CACAATGTCA TGATCAGCAC
CGAATGGGCG GCTCCCAATG TCTTACGAGA TGGCTTCAAC CCCGCTGATG TACAGGCAGG
GCTGTATGGG AGCTGCTTAC ACGTGTGGGA CTGGCAGCGC CACGAGATGG TGCAGACCCT
GCATCTGCAG GATGGGCTCA TCCCCCTGGA GGTCCGATTC CTGCACCACC CGGCCGCTTC
CCCAGGGCTT CGTAGGCTGT GCCCTGGGCT CCAACATCC


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSELENBP1selenium-binding protein 1 [Homo sapiens]. 494e-140O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSelenbp2selenium-binding protein 2 [Mus musculus]. 454e-129O
Contig/Assembly ProteinSelenbp1selenium-binding protein 1 [Mus musculus]. 454e-129O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC475847PREDICTED: similar to selenium binding protein 1 [Canis familiaris]. 489e-139


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSELENBP1selenium-binding protein 1 [Bos taurus]. 494e-142O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSELENBP1PREDICTED: selenium-binding protein 1 [Sus scrofa]. 539e-155O


Assembly Members: 4      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
ADR010039H05ADR01_0039_H05.bDB785001 
LVR010017F12LVR01_0017_F12.bBP446246 AK232312
LVRM10094D01LVRM1_0094_D01.bCJ003524 AK346187
OVRM10182F10OVRM1_0182_F10.bBP460198 

  

SNP: 1      TOP
Loc.AlleleIndividualsFreq.TypeAA Change
WesternMeishan
377A020.500BNATG/M
G200.500GTG/V


Alignment:      TOP

20110601C-012169 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVRM1_0094_D01.b : tggxxxxxxxxxxxxxxxxxxxx
OVRM1_0182_F10.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ADR01_0039_H05.b : nnggtgaaacaxxxxxxxxxxxxxxxxxx
LVR01_0017_F12.b : gcaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20110601C-012169 : ..................GGTTTTACAGCCTGCCTCTGACACCTGCGCGACTTTCGTCTC
---------+---------+---------+---------+---------+---------+ 42
LVRM1_0094_D01.b : xxxxxxxxxxxxxxxxxxGGTTTTACAGCCTGCCTCTGACACCTGCGCGACTTTCGTCTC
OVRM1_0182_F10.b : xxxxxxxxxxxxxxxxxxxxxxxxxCAGCCTGCCTCTGACACCTGCGCGACTTTCGTCTC
ADR01_0039_H05.b : xxxxxxxxxxxxxxxxxxxxxxxxxCAGCCTGCCTCTGACACCTGCGCGACTTTCGTCTC
LVR01_0017_F12.b : xxxxxxxxxxxxxxxxxxxxxxxxxCAGCCTGCCTCTGACACCTGCGCGACTTTCGTCTC
20110601C-012169 : TGCCCACTCCTGATAAAGCGCACCAGCGAGCAGCATGGCTACCAAATGTGGGAAGTGTGG
---------+---------+---------+---------+---------+---------+ 102
LVRM1_0094_D01.b : TGCCCACTCCTGATAAAGCGCACCAGCGAGCAGCATGGCTACCAAATGTGGGAAGTGTGG
OVRM1_0182_F10.b : TGCCCACTCCTGATAAAGCGCACCAGCGAGCAGCATGGCTACCAAATGTGGGAAGTGTGG
ADR01_0039_H05.b : TGCCCACTCCTGATAAAGCGCACCAGCGAGCAGCATGGCTACCAAATGTGGGAAGTGTGG
LVR01_0017_F12.b : TGCCCACTCCTGATAAAGCGCACCAGCGAGCAGCATGGCTACCAAATGTGGGAAGTGTGG
20110601C-012169 : ACCTGGCTACCCTACCCCCCTGGAGGCCATGAAAGGTAAGTTCGAGAAGACAGATCCAGC
---------+---------+---------+---------+---------+---------+ 162
LVRM1_0094_D01.b : ACCTGGCTACCCTACCCCCCTGGAGGCCATGAAAGGTAAGTTCGAGAAGACAGATCCAGC
OVRM1_0182_F10.b : ACCTGGCTACCCTACCCCCCTGGAGGCCATGAAAGGTAAGTTCGAGAAGACAGATCCAGC
ADR01_0039_H05.b : ACCTGGCTACCCTACCCCCCTGGAGGCCATGAAAGGTAAGTTCGAGAAGACAGATCCAGC
LVR01_0017_F12.b : ACCTGGCTACCCTACCCCCCTGGAGGCCATGAAAGGTAAGTTCGAGAAGACAGATCCAGC
20110601C-012169 : ATCCCCCGGAAGGGAAGTAGGCAAGCCATTGCTGGCACGTCCTGCACCCCGACTGCCTGC
---------+---------+---------+---------+---------+---------+ 222
LVRM1_0094_D01.b : ATCCCCCGGAAGGGAAGTAGGCAAGCCATTGCTGGCACGTCCTGCACCCCGACTGCCTGC
OVRM1_0182_F10.b : ATCCCCCGGAAGGGAAGTAGGCAAGCCATTGCTGGCACGTCCTGCACCCCGACTGCCTGC
ADR01_0039_H05.b : ATCCCCCGGAAGGGAAGTAGGTAAGCCATTGCTGGCACGTCCTGCACCCCGACTGCCTGC
LVR01_0017_F12.b : ATCCCCCGGAAGGGAAGTAGGCAAGCCATTGCTGGCACGTCCTGCACCCCGACTGCCTGC
20110601C-012169 : CCTCTACCCTCCAGGACCCAGGGAGGAGATTGTCTACCTGCCCTGCATTTACCGAAACAC
---------+---------+---------+---------+---------+---------+ 282
LVRM1_0094_D01.b : CCTCTACCCTCCAGGACCCAGGGAGGAGATTGTCTACCTGCCCTGCATTTACCGAAACAC
OVRM1_0182_F10.b : CCTCTACCCTCCAGGACCCAGGGAGGAGATTGTCTACCTGCCCTGCATTTACCGAAACAC
ADR01_0039_H05.b : CCTCTACCCTCCAGGACCCAGGGAGGAGATTGTCTACCTGCCCTGCATTTACCGAAACAC
LVR01_0017_F12.b : CCTCTACCCTCCAGGACCCAGGGAGGAGATTGTCTACCTGCCCTGCATTTACCGAAACAC
20110601C-012169 : AAGCACCGAGGCCCCGGATTATCTGGCCACTGTGGATGTTGACCCTAAGTCTCCCCAGTA
---------+---------+---------+---------+---------+---------+ 342
LVRM1_0094_D01.b : AAGCACCGAGGCCCCGGATTATCTGGCCACTGTGGATGTTGACCCTAAGTCTCCCCAGTA
OVRM1_0182_F10.b : AAGCACCGAGGCCCCGGATTATCTGGCCACTGTGGATGTTGACCCTAAGTCTCCCCAGTA
ADR01_0039_H05.b : AAGCACCGAGGCCCCGGATTATCTGGCCACTGTGGATGTTGACCCTAAGTCTCCCCAGTA
LVR01_0017_F12.b : AAGCACCGAGGCCCCGGATTATCTGGCCACTGTGGATGTTGACCCTAAGTCTCCCCAGTA
20110601C-012169 : TTGCCAGGTCATCCACCGGCTGCCCATGCCCAACATGAAGGACGAGCTGCATCACTCAGG
---------+---------+---------+---------+---------+---------+ 402
LVRM1_0094_D01.b : TTGCCAGGTCATCCACCGGCTGCCCATGCCCAACATGAAGGACGAGCTGCATCACTCAGG
OVRM1_0182_F10.b : TTGCCAGGTCATCCACCGGCTGCCCATGCCCAACATGAAGGACGAGCTGCATCACTCAGG
ADR01_0039_H05.b : TTGCCAGGTCATCCACCGGCTGCCCATGCCCAACGTGAAGGACGAGCTGCATCACTCAGG
LVR01_0017_F12.b : TTGCCAGGTCATCCACCGGCTGCCCATGCCCAACGTGAAGGACGAGCTGCATCACTCAGG
20110601C-012169 : ATGGAACACCTGCAGCAGCTGCTTCGGAGACAGCACCAAGTCACGCACCAAGCTGATGCT
---------+---------+---------+---------+---------+---------+ 462
LVRM1_0094_D01.b : ATGGAACACCTGCAGCAGCTGCTTCGGAGACAGCACCAAGTCACGCACCAAGCTGATGCT
OVRM1_0182_F10.b : ATGGAACACCTGCAGCAGCTGCTTCGGAGACAGCACCAAGTCACGCACCAAGCTGATGCT
ADR01_0039_H05.b : ATGGAACACCTGCAGCAGCTGCTTCGGAGACAGCACCAAGTCACGCACCAAGCTGATGCT
LVR01_0017_F12.b : ATGGAACACCTGCAGCAGCTGCTTCGGAGACAGCACCAAGTCACGCACCAAGCTGATGCT
20110601C-012169 : GCCCTGCCTCATCTCCTCCCGAATTTATGTGGTGGACGTGGGCACCGAACCCCGTGCCCC
---------+---------+---------+---------+---------+---------+ 522
LVRM1_0094_D01.b : GCCCTGCCTCATCTCCTCCCGAATTTATGTGGTGGACGTGGGCACCGAACCCCGTGCCCC
OVRM1_0182_F10.b : GCCCTGCCTCATCTCCTCCCGAATTTATGTGGTGGACGTGGGCACCGAACCCCGTGCCCC
ADR01_0039_H05.b : GCCCTGCCTCATCTCCTCCCGAATTTATGTGGTGGACGTGGGCACCGAACCCCGTGCCCC
LVR01_0017_F12.b : GCCCTGCCTCATCTCCTCCCGAATTTATGTGGTGGACGTGGGCACCGAACCCCGTGCCCC
20110601C-012169 : AAAGCTGCACAAGGTCATCGAGCCCCAGGACATCCATGCCAAGTGTGACCTGGGCTACCT
---------+---------+---------+---------+---------+---------+ 582
LVRM1_0094_D01.b : AAAGCTGCACAAGGTCATCGAGCCCCAGGACATCCATGCCAAGTGTGACCTGGGCTACCT
OVRM1_0182_F10.b : AAAGCTGCACAAGGTCATCGAGCCCCAGGACATCCATGCCAAGTGTGACCTGNGCTACCT
ADR01_0039_H05.b : AAAGCTGCACAAGGTCATCGAGCCCCAGGACATCCATGCCAAGTGTGACCTGNGCTACCT
LVR01_0017_F12.b : AAAGCTGCACAAGGTCATCGAGCCCCAGGACATCCATGCCAAGTGTGACCTGGGCTACCT
20110601C-012169 : ACACACCAGCCACTGCCTGGCCAGTGGGGAGGTGATGATCAGTGCCCTGGGAGATCCCAA
---------+---------+---------+---------+---------+---------+ 642
LVRM1_0094_D01.b : ACACACCAGCCACTGCCTGGCCAGTGGGGAGGTGATGATCAGTGCCCTGGGAGATCCCAA
OVRM1_0182_F10.b : ACACACCAGCCACTGCCTGGCCAGTGNGGAGGTGATGATCAGTGCCCTGGGAGATCCCAA
ADR01_0039_H05.b : ACACACCAGCCACTGCCTGGCCAGTGGGGAGGTGATGATCAGTGCCCTGGNGAGATCCAA
LVR01_0017_F12.b : ACACACCAGCCACTGCCTGGCCAGTGGGGAGGTGATGATCAGTGCCCTGGGAGATCCCAA
20110601C-012169 : GGGCAATGGCAAAGGGGGGTTTGTGCTGCTGGATGGAGAGACCTTTGAGGTGAAGGGGAC
---------+---------+---------+---------+---------+---------+ 702
LVRM1_0094_D01.b : GGGCAATGGGCAAGGtaccggccggcactgtaggcacatctgtgagggaagtagatccca
OVRM1_0182_F10.b : GGGCAATGGNCAAGGGGGGTTTGTGCTGCTGGATGGAGAGACCTTTGAGGTGAAGGGGAC
ADR01_0039_H05.b : GGGCAATGGCAAAGGGGGGTTTGTGCTGCTGGATGGANAGA*CTTTGANGTGAANGGGAC
LVR01_0017_F12.b : GGGCAATGGCAAAGGGGGGTTTGTGCTGCTGGATGGAGAGACCTTTGAGGTGAAGGGGAC
20110601C-012169 : ATGGGAGAGGCCTGGAGGTGCTGCTCCCTTGGGCTATGACTTCTGGTACCAGCCTCGACA
---------+---------+---------+---------+---------+---------+ 762
LVRM1_0094_D01.b : agctggggaagggatggaatgacctnacagac
OVRM1_0182_F10.b : ATGGGAGAGGCCTGGAGGTGCTGCTCCCTTGGGCTATGACTTCTGGTACCA
ADR01_0039_H05.b : ATGGGAGAAGCCTGGAAGTGCTGCTCCCTTGGGCTATGACTTCTGGTACCACCCTCGACA
LVR01_0017_F12.b : ATGGGAGAGGCCTGGAGGTGCTGCTCCCTTGGGCTATGACTTCTGGTACCAGCCTCGACA
20110601C-012169 : CAATGTCATGATCAGCACCGAATGGGCGGCTCCCAATGTCTTACGAGATGGCTTCAACCC
---------+---------+---------+---------+---------+---------+ 822
LVRM1_0094_D01.b :
OVRM1_0182_F10.b :
ADR01_0039_H05.b : CAATGTCATGATCAGCACCGAATGGGCGGCTCCCAATGTCTTACGAAATGGCTTCTACCC
LVR01_0017_F12.b : CAATGTCATGATCAGCACCGAATGGGCGGCTCCCAATGTCTTACGAGATGGCTTCAACCC
20110601C-012169 : CGCTGATGTACAGGCAGGGCTGTATGGGAGCTGCTTACACGTGTGGGACTGGCAGCGCCA
---------+---------+---------+---------+---------+---------+ 882
LVRM1_0094_D01.b :
OVRM1_0182_F10.b :
ADR01_0039_H05.b : C*CTGAAGTTCAGGCAGGGCTGTtatggacctgcttaacgtgtgggcactgcaaccgccc
LVR01_0017_F12.b : CGCTGATGTACAGGCAGGGCTGTATGGGAGCTGCTTACACGTGTGGGACTGGCAGCGCCA
20110601C-012169 : CGAGATGGTGCAGACCCTGCATCTGCAGGATGGGCTCATCCCCCTGGAGGTCCGATTCCT
---------+---------+---------+---------+---------+---------+ 942
LVRM1_0094_D01.b :
OVRM1_0182_F10.b :
ADR01_0039_H05.b : aaaatgtgcaaaccctgcatctgcaggagggcctctccccctggaaatccaatcctggaa
LVR01_0017_F12.b : CGAGATGGTGCAGACCCTGCATCTGCAGGATGGGCTCATCCCCCTGGAGGTCCGATTCCT
20110601C-012169 : GCACCACCCGGCCGCTTCCCCAGGGCTTCGTAGGCTGTGCCCTGGGCTCCAACATCC...
---------+---------+---------+---------+---------+---------+ 999
LVRM1_0094_D01.b :
OVRM1_0182_F10.b :
ADR01_0039_H05.b : gacccggcgcttcccagggtttctaggctgggcctgggttccaaatcaaggctttaaaaa
LVR01_0017_F12.b : GCACCACCCGGCCGCTTCCCCAGGGCTTCGTAGGCTGTGCCCTGGGCTCCAACATCCcac
20110601C-012169 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
LVRM1_0094_D01.b :
OVRM1_0182_F10.b :
ADR01_0039_H05.b : ttgaaggaagtactgctcggaaaaaggggatccagtgcccccaaaaagtgagggctggag
LVR01_0017_F12.b : cgcttctacaagaaatgagggtggcatgtggctctggcccctcttccttctcaccagtcc
20110601C-012169 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
LVRM1_0094_D01.b :
OVRM1_0182_F10.b :
ADR01_0039_H05.b : ctgctgaatgccagcctctcctgaaatctgggtcctgggaaacgtttcttaattaaaatg
LVR01_0017_F12.b : ctggttatgcctcttgctacaaggaacccccc
20110601C-012169 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
LVRM1_0094_D01.b :
OVRM1_0182_F10.b :
ADR01_0039_H05.b : tttgccgggaattgcacttaaattcccaaccaaaagccccttcagaaaaccttcttgggg
LVR01_0017_F12.b :
20110601C-012169 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
LVRM1_0094_D01.b :
OVRM1_0182_F10.b :
ADR01_0039_H05.b : catatgtaggggcccccgcaaggtgtaaaaaaaataatcctcaaacctgtggttgggaaa
LVR01_0017_F12.b :
20110601C-012169 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
LVRM1_0094_D01.b :
OVRM1_0182_F10.b :
ADR01_0039_H05.b : aaatggagcctcaataccctcccggggaggcctttttcctcgttggggggaaaatttttc
LVR01_0017_F12.b :
20110601C-012169 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
LVRM1_0094_D01.b :
OVRM1_0182_F10.b :
ADR01_0039_H05.b : cttcggggggtgtgttaagtaaaaaagggtattattcttggttgga
LVR01_0017_F12.b :