[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20110601C-013336
Length:
1,025
Sequence:
[FASTA format sequence]
TGCCAGCCTC AACCCTCTGG ACCAATCGCC CCCATCAGAC TGTGCTCCTC AATTGTATAC
CAGGTGGGAC ATCTGAGGGG AGCCCAGCTT AGGGACACCT GGGTCCAATT TCCCCAGGGA
GTGTGGGGAT GGGGGCTGGA GATGAATGGA GCCTGGTGCC ATATGTGAGG AACCTCGGTG
TCCACAGCAA AGCCTGATGG GGACCTGAGG ATGCTCCGAG AGCAGTAGAA GCCTGAACCA
GAGCCTCTAA CCCTGTCCCC CCAATAATGG GGCCCCCATT GAGTCATCTG CTGGCTGGCC
TGTGTGTGTG GGTGGCCTTG GGCTGGGTAG GAGGCTCTGC TCCCAACCTG GGCCCTGCTG
AGCAGGAGCA GAACCATTAC CTGGCCCAGC TGTTTGGCCT CTATGGGGAG AACGGGACGC
TGACTGCAGG GGGCCTGGCA CGGCTTCTTC ACAGCCTGGG ACTAGGCCGA GTTCAAGCCC
TTCGCCTGGG ACACCACGGG CCTCCCGCTG GTCGGGCTAC ACCCCCAGCT GAAGACAATT
CCACCCACAG GCCACAGGAC CCTGAGCTGA GTGTGGATGT CTGGGCAGGG CTGCCTCTGG
ATCCCTCAGG GTGGGGTGAC CTGGAAGAGC CAGAGGCCCC AGCACCACCC CATGGGCCGG
CCCCCTCAGG CCTGGGCCTC TTTCACAGGC TTCTGCTGCT GGACCATTCA CTAGCTGACC
ATCTGAATGA GGATTGTCTG AATGGCTCCC AGCTGCTGGT CAATTTTGGC CTGAGCCCTG
CTGCTCCTCT GACCCCTCGT CAGTTTGCTC TGCTGTGTCC AGCCCTGCTG TATCAGATTG
ACAGCCGTGT CTGCATCCGG GCCCCAGCCC CAACGCCTCC GGGGGATCTA CTATCTGCCC
TGGTCACAGT GCCCTGGCAG TCCTGCTGCT CAGCCTTCCT GCTCCCCTCT CCCTGCTCTT
GCTGCGGCTC CTGGGGACTC GTCTGTTGCA GCCCCTGCTG GGCTTCCTGG GTGCCCTGGC
CGTGG
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
SLC39A5 | zinc transporter ZIP5 [Homo sapiens]. | 301 | 5e-82 | O | ||
SLC39A5 | zinc transporter ZIP5 [Homo sapiens]. | 301 | 5e-82 | O | ||
SLC39A10 | zinc transporter ZIP10 precursor [Homo sapiens]. | 50.8 | 2e-06 | |||
SLC39A10 | zinc transporter ZIP10 precursor [Homo sapiens]. | 50.8 | 2e-06 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
Slc39a5 | zinc transporter ZIP5 precursor [Mus musculus]. | 284 | 7e-77 | O | ||
Slc39a5 | zinc transporter ZIP5 precursor [Mus musculus]. | 284 | 7e-77 | O | ||
Slc39a5 | zinc transporter ZIP5 precursor [Mus musculus]. | 284 | 7e-77 | O | ||
Slc39a10 | zinc transporter ZIP10 precursor [Mus musculus]. | 61.6 | 9e-10 |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
LOC481108 | PREDICTED: similar to solute carrier family 39 (metal ion transporter), member 5 [Canis familiaris]. | 303 | 2e-82 | O | ||
LOC478850 | PREDICTED: similar to solute carrier family 39 (zinc transporter), member 10 [Canis familiaris]. | 52.8 | 5e-07 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
SLC39A5 | PREDICTED: solute carrier family 39 (metal ion transporter), member 5 [Bos taurus]. | 312 | 3e-85 | O | ||
SLC39A5 | PREDICTED: solute carrier family 39 (metal ion transporter), member 5 [Bos taurus]. | 312 | 3e-85 | O |
Locus | Definition | Score | E value | FL | ||
---|---|---|---|---|---|---|
SLC39A5 | PREDICTED: zinc transporter ZIP5 isoform 2 [Sus scrofa]. | 335 | 2e-92 | O | ||
SLC39A5 | PREDICTED: zinc transporter ZIP5 isoform 1 [Sus scrofa]. | 335 | 2e-92 | O |
|
|
20110601C-013336 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVRM1_0141_A07.b : nagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0098_C04.b : gacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ITT01_0071_H03.b : nnggatgaac
LVRM1_0104_C08.b :
LVRM1_0160_G07.b :
20110601C-013336 : .....................TGCCAGCCTCAACCCTCTGGACCAATCGCCCCCATCAGA
---------+---------+---------+---------+---------+---------+ 39
LVRM1_0141_A07.b : xxxxxxxxxxxxxxxxxxxxxTGCCAGCCTCAACCCTCTGGACCAATCGCCCCCATCAGA
LVR01_0098_C04.b : xxxxxxxxxxxxxxxxxxxxxxxxxcttcctgtttcctgttgtcaggtaatgccagcctc
ITT01_0071_H03.b : axxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxctgctggaaccgaga
LVRM1_0104_C08.b : nagttg
LVRM1_0160_G07.b : cagtttgtcxxxxxxxxxx
20110601C-013336 : CTGTGCTCCTCAATTGTATACCAGGTGGGACATCTGAGGGGAGCCCAGCTTAGGGACACC
---------+---------+---------+---------+---------+---------+ 99
LVRM1_0141_A07.b : CTGTGCTCCTCAATTGTATACCAGGTGGGACATCTGAGGGGAGCCCAGCTTAGGGACACC
LVR01_0098_C04.b : aaccctctggaccaatcgcccccatcagactgtgctcctcaattgtataccAGGGACACC
ITT01_0071_H03.b : aggctgtgtccccttcctctgggctcccttcctgtttcctgttgtcagcttAGGGACACC
LVRM1_0104_C08.b : tcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtgccta
LVRM1_0160_G07.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxcttcctgtttcctgttgt
20110601C-013336 : TGGGTCCAATTTCCCCAGGGAGTGTGGGGATGGGGGCTGGAGATGAATGGAGCCTGGTGC
---------+---------+---------+---------+---------+---------+ 159
LVRM1_0141_A07.b : TGGGTCCAATTTCCCCAGGGAGTGTGGGGATGGGGGCTGGAGATGAATGGAGCCTGGTGC
LVR01_0098_C04.b : TGGGTCCAATTTCCCCAGGGAGTGTGGGGATGGGGGCTGGAGATGAATGGAGCCTGGTGC
ITT01_0071_H03.b : TGGGTCCAATTTCCCCAGGGAGTGTGGGGATGGGGGCTGGAGATGAATGGAGCCTGGTGC
LVRM1_0104_C08.b : ccccccactgctggaaccgagaaggctgtgtctccttcctctgggctcccttcctgtttc
LVRM1_0160_G07.b : caggtaatgccagcctcaaccctctggaccaatcgcccccatcagactgtgctcctcaat
20110601C-013336 : CATATGTGAGGAACCTCGGTGTCCACAGCAAAGCCTGATGGGGACCTGAGGATGCTCCGA
---------+---------+---------+---------+---------+---------+ 219
LVRM1_0141_A07.b : CATATGTGAGGAACCTCGGTGTCCACAGCAAAGCCTGATGGGGACCTGAGGATGCTCCGA
LVR01_0098_C04.b : CATATGTGAGGAACCTCGGTGTCCACAGCAAAGCCTGATGGGGACCTGAGGATGCTCCGA
ITT01_0071_H03.b : CATATGTGAGGAACCTCGGTGTCCACAGCAAAGCCTGATGGGGACCTGAGGATGCTCCGA
LVRM1_0104_C08.b : ctgttgtCAGGAACCTCGGTGTCCACAGCAAAGCCTGATGGGGACCTGAGGATGCTCCGA
LVRM1_0160_G07.b : tgtatacCAGGAACCTCGGTGTCCACAGCAAAGCCTGATGGGGACCTGAGGATGCTCCGA
20110601C-013336 : GAGCAGTAGAAGCCTGAACCAGAGCCTCTAACCCTGTCCCCCCAATAATGGGGCCCCCAT
---------+---------+---------+---------+---------+---------+ 279
LVRM1_0141_A07.b : GAGCAGTAGAAGCCTGAACCAGAGCCTCTAACCCTGTCCCCCCAATAATGGAGCCCCCAT
LVR01_0098_C04.b : GAGCAGTAGAAGCCTGAACCAGAGCCTCTAACCCTGTCCCCCCAATAATGGGGCCCCCAT
ITT01_0071_H03.b : GAGCAGTAGAAGCCTGAACCAGAGCCTCTAACCCTGTCCCCCCAATAATGGGGCCCCCAT
LVRM1_0104_C08.b : GAGCAGTAGAAGCCTGAACCAGAGCCTCCAACCCTGTCCCCCCAATAATGGGGCCCCCAT
LVRM1_0160_G07.b : GAGCAGTAGAAGCCTGAACCAGAGCCTCTAACCCTGTCCCCCCAATAATGGGGCCCCCAT
20110601C-013336 : TGAGTCATCTGCTGGCTGGCCTGTGTGTGTGGGTGGCCTTGGGCTGGGTAGGAGGCTCTG
---------+---------+---------+---------+---------+---------+ 339
LVRM1_0141_A07.b : TGAGTCATCTGCTGTCTGGCCTGTGTGTGTGGGTGGCCTTGGGCTGGGTAGGAGGCTCTG
LVR01_0098_C04.b : TGAGTCATCTGCTGGCTGGCCTGTGTGTGTGGGTGGCCTTGGGCTGGGTAGGAGGCTCTG
ITT01_0071_H03.b : TGAGTCATCTGCTGGCTGGCCTGTGTGTGTGGGTGGCCTTGGGCTGGGTAGGAGGCTCTG
LVRM1_0104_C08.b : TGAGTCATCTGCTGGCTGGCCTGTGTGTGTGGGTGGCCTTGGGCTGGGTAGGAGGCTCTG
LVRM1_0160_G07.b : TGAGTCATCTGCTGGCTGGCCTGTGTGTGTGGGTGGCCTTGGGCTGGGTAGGAGGCTCTG
20110601C-013336 : CTCCCAACCTGGGCCCTGCTGAGCAGGAGCAGAACCATTACCTGGCCCAGCTGTTTGGCC
---------+---------+---------+---------+---------+---------+ 399
LVRM1_0141_A07.b : CTCCCAACCTGGGCCCTGCTGAGCAGGAGCAGAACCATTACCTGGCCCAGCTGTTTGGCC
LVR01_0098_C04.b : CTCCCAACCTGGGCCCTGCTGAGCAGGAGCAGAACCATTACCTGGCCCAGCTGTTTGGCC
ITT01_0071_H03.b : CTCCCAACCTGGGCCCTGCTGAGCAGGAGCAGAACCATTACCTGGCCCAGCTGTTTGGCC
LVRM1_0104_C08.b : CTCCCAACCTGGGCCCTGCTGAGCAGGAGCAGAACCATTACCTGGCCCAGCTGTTTGGCC
LVRM1_0160_G07.b : CTCCCAACCTGGGCCCTGCTGAGCAGGAGCAGAACCATTACCTGGCCCAGCTGTTTGGCC
20110601C-013336 : TCTATGGGGAGAACGGGACGCTGACTGCAGGGGGCCTGGCACGGCTTCTTCACAGCCTGG
---------+---------+---------+---------+---------+---------+ 459
LVRM1_0141_A07.b : TCTATGGGGAGAACGGGACGCTGACTGCAGGGGGCCTGGCACGGCTTCTTCACAGCCTGG
LVR01_0098_C04.b : TCTATGGGGAGAACGGGACGCTGACTGCAGGGGGCCTGGCACGGCTTCTTCACAGCCTGG
ITT01_0071_H03.b : TCTATGGGGAGAACGGGACGCTGACTGCAGGGGGCCTGGCACGGCTTCTTCACAGCCTGG
LVRM1_0104_C08.b : TCTATGGGGAGAACGGGACGCTGACTGCAGGGGGCCTGGCACGGCTTCTTCACAGCCTGG
LVRM1_0160_G07.b : TCTATGGGGAGAACGGGACGCTGACTGCAGGGGGCCTGGCACGGCTTCTTCACAGCCTGG
20110601C-013336 : GACTAGGCCGAGTTCAAGCCCTTCGCCTGGGACACCACGGGCCTCCCGCTGGTCGGGCTA
---------+---------+---------+---------+---------+---------+ 519
LVRM1_0141_A07.b : GACTAGGCCGAGTTCAAGCCCTTCGCCTGGGACACCACGGGCCTCCCGCTGGTCGGGCTA
LVR01_0098_C04.b : GACTAGGCCGAGTTCAAGCCCTTCGCCTGGGACACCACGGGCCTCCCGCTGGTCGGGCTA
ITT01_0071_H03.b : GACTAGGCCGAGTTCAAGCCCTTCGCCTGGGACACCACGGGCCTCCCGCTGGTCGGGCTA
LVRM1_0104_C08.b : GACTAGGCCGAGTTCAAGCCCTTCGCCTGGGACACCACGGGCCTCCCGCTGGTCGGGCTA
LVRM1_0160_G07.b : GACTAGGCCGAGTTCAAGCCCTTCGCCTGGGACACCACGGGCCTCCCGCTGGTCGGGCTA
20110601C-013336 : CACCCCCAGCTGAAGACAATTCCACCCACAGGCCACAGGACCCTGAGCTGAGTGTGGATG
---------+---------+---------+---------+---------+---------+ 579
LVRM1_0141_A07.b : CACCCCCAGCTGGAGACAATTCCACCCACAGGCCACAGGACCCTGAGCTGAGTGTGGATG
LVR01_0098_C04.b : CACCCCCAGCTGAAGACAATTCCACCCACAGGCCACAGGACCCTGAGCTGAGTGTGGATG
ITT01_0071_H03.b : CACCCCCAGCTGAAGACAATTCCACCCACAGGCCACAGGACCCTGAGCTGAGTGTGGATG
LVRM1_0104_C08.b : CACCCCCAGCTGGAGACAATTCCACCCACAGGCCACAGGACCCTGAGCTGAGTGTGGATG
LVRM1_0160_G07.b : CACCCCCAGCTGGAGACAATTCCACCCACAGGCCACAGGACCCTGAGCTGAGTGTGGATG
20110601C-013336 : TCTGGGCAGGGCTGCCTCTGGATCCCTCAGGGTGGGGTGACCTGGAAGAGCCAGAGGCCC
---------+---------+---------+---------+---------+---------+ 639
LVRM1_0141_A07.b : TCTGGGCAGGGCTGCCTCTGGGTCCCTCANGGTGGGGTGACCTGNAAGAGCCAGAGGCCC
LVR01_0098_C04.b : TCTGGGCAGGGCTGCCTCTGGATCCCTCAGGGTGGGGTGACCTGGAAGAGCCAGAGGCCC
ITT01_0071_H03.b : TCTGGGCAGGGCTGCCTCTGGATCCCTCAGGGTGGGGTGACCTGGAAGAGCCAGAGGCCC
LVRM1_0104_C08.b : TCTGGGCAGGGCTGCCTCTGGATCCCTCAAGGTGGGGTGACCTGGAAGAGCCAGAGGCCC
LVRM1_0160_G07.b : TCTGGGCAGGGCTGCCTCTGGATCCCTCAGGGTGGGGTGACCTGGAAGAGCCAGAGGCCC
20110601C-013336 : CAGCACCACCCCATGGGCCGGCCCCCTCAGGCCTGGGCCTCTTTCACAGGCTTCTGCTGC
---------+---------+---------+---------+---------+---------+ 699
LVRM1_0141_A07.b : CAGCACCACCCCATGGGCCGGCCCCCTCAGGCCTGGGCCTCTTTCACAGGCTTCTGCTGC
LVR01_0098_C04.b : CAGCACCACCCCATGGGCCGGCCCCCTCAGGCCTGGGCCTCTTTCACAGGCTTCTGCTGC
ITT01_0071_H03.b : CAGCACCACCCCATGGGCCGGCCCCCTCAGGCCTGGGCCTCTTTCACAGGCTTCCGCTGC
LVRM1_0104_C08.b : CAGCACCACCCCATGGGCCGGCCCCCTCATGCCTGGGCCTCTTTT*CAGGCTTCTGCTGC
LVRM1_0160_G07.b : CAGCACCACCCCATGGGCCGGCCCCCTCAGGCCTGGGCCTCTTTCACAGGCTTCTGCTGC
20110601C-013336 : TGGACCATTCACTAGCTGACCATCTGAATGAGGATTGTCTGAATGGCTCCCAGCTGCTGG
---------+---------+---------+---------+---------+---------+ 759
LVRM1_0141_A07.b : TGGACCATTCACTAGCTGACCATCTGAATGAGGATTGTCTGAATGGCTCCCAGCTGCTGG
LVR01_0098_C04.b : TGGACCATTCACTAGCTGACCATCTGAATGAGGATTGTCTGAATGGCTCCCAGCTGCTGG
ITT01_0071_H03.b : TGGACCATTCACTAGCTGACCATCTGAATGAGGATTGTCTGAATGGCTCCCAGCTGCTGG
LVRM1_0104_C08.b : TGGACCATTCACTATCTGACCATCTGTATGAGGATTGTCTGAATGGCTCCCAGCTGCTGG
LVRM1_0160_G07.b : TGGACCATTCACTAGCTGACCATCTGAATGAGGATTGTCTGAATGGCTCCCAGCTGCTGG
20110601C-013336 : TCAATTTTGGCCTGAGCCCTGCTGCTCCTCTGACCCCTCGTCAGTTTGCTCTGCTGTGTC
---------+---------+---------+---------+---------+---------+ 819
LVRM1_0141_A07.b : TCAATTTn
LVR01_0098_C04.b : TCAATTTTGGCCTGAGCCCTGCTGCTCCTCTGACCCCTCGTCAGTTTGCTCTGCTGTGTC
ITT01_0071_H03.b : TCAATTTTGGCCTGAGCCCTGCTGCTCCTCTGACCCCTCGTCAGTTTGCTCTGCTGTGTC
LVRM1_0104_C08.b : TCAATTTTGGC*TGAGCCCTGCTGCTCCTCTGACCCCCCGACAGTATGCTCTGCTGTGgt
LVRM1_0160_G07.b : TCAATTTTGGCCTGAGCCC*GCTGCTCTTCTG*CCCCTCGTCAGTTTGCTCCGCTGTTGT
20110601C-013336 : CAGCCCTGCTGTATCAGATTGACAGCCGTGTCTGCATCCGGGCCCCAGCCCCAACGCCTC
---------+---------+---------+---------+---------+---------+ 879
LVRM1_0141_A07.b :
LVR01_0098_C04.b : CAGCCCTGCTGTATCAGATTGACAGCCGTGTCTGCATCCGGGCCCCAGCCCCAACGCCTC
ITT01_0071_H03.b : CAGCCCTGCTGTATCAGATTGACAGCCGTGTCTGCATCCGGGCCCCAGCCCCAACGCCTC
LVRM1_0104_C08.b : cagcctgctgtattcgttgacaacgggtttgctccgggccctaccc
LVRM1_0160_G07.b : CAGCCCTGCTGTActaaattgacgccgtgtctgcctcc
20110601C-013336 : CGGGGGATCTACTAT*CTGCCCTGGTCACAGTGCCCTGGCAGTCCTGCTGCTCAGCCTTC
---------+---------+---------+---------+---------+---------+ 938
LVRM1_0141_A07.b :
LVR01_0098_C04.b : CG*GGGATCTACTATTCTGCCCTGGTCCACGTGCCCTGGCAATCCTGCTGCTCAGCCTTC
ITT01_0071_H03.b : CGGGGGATCTACTAT*CTGCCCTGGTCACAGTGCCCTGGCAGTCCTGCTGCTCAGCCTTC
LVRM1_0104_C08.b :
LVRM1_0160_G07.b :
20110601C-013336 : CTGCTCCCCTCTCCCTGCTCTTGCTGCGGCTCCTGGGGACTCGTCTGTTGCAGCCCCTGC
---------+---------+---------+---------+---------+---------+ 998
LVRM1_0141_A07.b :
LVR01_0098_C04.b : CCGCTCCCtctccctggtcctgctgcggctcccgggacccccttctgttcgaccccccgg
ITT01_0071_H03.b : CTGCTCCCCTCTCCCTGCTCTTGCTGCGGCTCCTGGGGACTCGTCTGTTGCAGCCCCTGC
LVRM1_0104_C08.b :
LVRM1_0160_G07.b :
20110601C-013336 : TGGGCTTCCTGGGTGCCCTGGCCGTGG.................................
---------+---------+---------+---------+---------+---------+ 1025
LVRM1_0141_A07.b :
LVR01_0098_C04.b : ctgggcttccctgggggccccgggccctggggccccctttttgggggagagccctggctt
ITT01_0071_H03.b : TGGGCTTCCTGGGTGCCCTGGCCGTGGcaccctttgtgggatgcactgctacacttatgc
LVRM1_0104_C08.b :
LVRM1_0160_G07.b :
20110601C-013336 : ............................................................
---------+---------+---------+---------+---------+---------+ 1025
LVRM1_0141_A07.b :
LVR01_0098_C04.b : accccctcctggccccattgtgcaaaggggggggcaccccaaatgggatatttggggccc
ITT01_0071_H03.b : ccatgcgcaaggaggccacccagtggatctggccacggcaaaggagacctggaacaggac
LVRM1_0104_C08.b :
LVRM1_0160_G07.b :
20110601C-013336 : ............................................................
---------+---------+---------+---------+---------+---------+ 1025
LVRM1_0141_A07.b :
LVR01_0098_C04.b : cccgggcccaaaagaaaaagaaccccggggaaacccaagaaaaagggtttcgcggggggc
ITT01_0071_H03.b : tgtccggctgggggctctccggcctccttctggaaaatgcaaggctttgggcccaaggcc
LVRM1_0104_C08.b :
LVRM1_0160_G07.b :
20110601C-013336 : ............................................................
---------+---------+---------+---------+---------+---------+ 1025
LVRM1_0141_A07.b :
LVR01_0098_C04.b : ctttttgtgggggtggtgttcccccttttttccccttctgccttcc
ITT01_0071_H03.b : tcgcccaaggctccggcaaaaaaggattcaattccaactgacccagagaggcctggaagg
LVRM1_0104_C08.b :
LVRM1_0160_G07.b :
20110601C-013336 : ............................................................
---------+---------+---------+---------+---------+---------+ 1025
LVRM1_0141_A07.b :
LVR01_0098_C04.b :
ITT01_0071_H03.b : ccttcccctaagcactccaaacgggttaggccaagaaagaaaccccccacaccggcctag
LVRM1_0104_C08.b :
LVRM1_0160_G07.b :
20110601C-013336 : ............................................................
---------+---------+---------+---------+---------+---------+ 1025
LVRM1_0141_A07.b :
LVR01_0098_C04.b :
ITT01_0071_H03.b : gacaggcattgggtaaggggggggcaaaaagggggccggggaggcccacctcagaggaag
LVRM1_0104_C08.b :
LVRM1_0160_G07.b :
20110601C-013336 : ............................................................
---------+---------+---------+---------+---------+---------+ 1025
LVRM1_0141_A07.b :
LVR01_0098_C04.b :
ITT01_0071_H03.b : ggcc
LVRM1_0104_C08.b :
LVRM1_0160_G07.b :