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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  ITT01_0086_H05

Library: ITT01 (Intestine)
Individual: LWD2, Crossbred pig ((Landrace x Large White) x Duroc, Western)

Nucleotide sequence:   (length: 1,093)  [FASTA format sequence]
TCATTGCTCT ACAACTCCGA AGAGCAACAG CTGCCTCTGT TTAGCAAATT TAGAAGTTCT
GACCCACAGG GTGCACTGAG GAACATAGCT ACGGCAAAAC ATAATTTGAA CATCCTGATT
AAACGTTCCA ACAACACCGC GGCTGTCAAT CAGGTTCCTG AGGTGACTGT GTTTCCCAAG
TCTCCAGTG
A TGCTGGGTCA GCCCAACACC CTCATCTGTC ATGTGGACAA CATCTTTCCT
CCTGTGATCA ACATCACGTG GTTGAAGAAC GGGCACTCTG TCACAGAAGG TTTTTCTGAG
ACCAGCTTCC TCTCCAAAAA TGATCATTCC TTCCTCAAGA TCAGTTATCT CACCTTCCTC
CCTTCTGATG ATGATTTTTA TGACTGCAAA GTGGAGCACT GGGGCCTGGA TAAGCCACTT
CTGAAACACT GGGAACCTGA GATTCCAGCC CCCATGTCAG AGCTGACAGA GACAGTGGTC
TGCGCCCTGG GATTGATCGT GGGCCTTGTG GGCATCGTGG TGGGCACTGT CTTCATCATT
CAAGGCCTGC GCTCAGGTGG TCCCTCTAGA CACCAAGGGT CCTTGTGAGT CACACTCCAG
AAGGGAAGGT GCACTGCCCG CCTACAAGAG CTGAAGAGTG GATGTGCTCA ACGACCTAGA
ACTATTTTCT GGCCAAATTC ATCATATACC TTCTCTCTTC CTACATTCTT CTTCTCACCT
CTTCTCTGGA ACTTAAGGTG CTGTGTCATC TCAGAATTCA TATGCCCTTG GAATCCTCTT
CCTGACCTTC TAGGTTTTTT TTCTTTTCTC AGTTGTTACC TGTTATGGGA TCTCTGAGAT
ATCCCACTCG GCTACCTGAT CCCTCAGTGA CCCTAAACTA ATATGTACAT GGAAACAATA
AATCACTTCA TGAGGTTTTT GTACTGAATT CTTTCCTGTC TTTCATCTCA AGGCTGACTA
GGACCATGGT CTCTTGCACT TCAGGCCCAT TTAATCTCAT TTCCCAGGTT ATGCTTCATG
CCCAGTAACA CAGGAGAAGC ATGTATAGAC TGACAATAAA TATTTTGCCG TCTTAAAAAA
AAAAAAAAAA AAA

Deduced amino acid sequence:  (length: 132) [FASTA format sequence]
MLGQPNTLIC HVDNIFPPVI NITWLKNGHS VTEGFSETSF LSKNDHSFLK ISYLTFLPSD
DDFYDCKVEH WGLDKPLLKH WEPEIPAPMS ELTETVVCAL GLIVGLVGIV VGTVFIIQGL
RSGGPSRHQG SL


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100507718PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 3 [Homo sapiens]. 2762e-74
Contig/Assembly ProteinHLA-DQA1HLA class II histocompatibility antigen, DQ alpha 1 chain precursor [Homo sapiens]. 2723e-73
Contig/Assembly ProteinLOC100509457PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 4 [Homo sapiens]. 2287e-60


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Aahistocompatibility 2, class II antigen A, alpha precursor [Mus musculus]. 2493e-66
Contig/Assembly ProteinH2-Ea-pshistocompatibility 2, class II antigen E alpha precursor [Mus musculus]. 1832e-46
Contig/Assembly ProteinH2-Oahistocompatibility 2, O region alpha locus [Mus musculus]. 1794e-45
Contig/Assembly ProteinH2-DMaclass II histocompatibility antigen, M alpha chain precursor [Mus musculus]. 72.46e-13
Contig/Assembly ProteinH2-DMb2histocompatibility 2, class II, locus Mb2 [Mus musculus]. 63.53e-10


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha [Canis lupus familiaris]. 2757e-74
Contig/Assembly ProteinDLA-DRAMHC class II DR alpha chain [Canis lupus familiaris]. 1863e-47
Contig/Assembly ProteinLOC474869PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 11 [Canis familiaris]. 1841e-46
Contig/Assembly ProteinHLA-DQB1major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. 68.21e-11
Contig/Assembly ProteinLOC607827PREDICTED: similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) [Canis familiaris]. 59.36e-09


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100336394PREDICTED: BOLA-DQA2 protein-like [Bos taurus]. 2711e-72
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 5 [Bos taurus]. 2702e-72
Contig/Assembly ProteinBOLA-DQA1major histocompatibility complex, class II, DQ alpha, type 1 [Bos taurus]. 2662e-71
Contig/Assembly ProteinBOLA-DQA3major histocompatibility complex, class II, DQ alpha, type 3 [Bos taurus]. 2588e-69
Contig/Assembly ProteinLOC525727PREDICTED: MHC class II antigen-like [Bos taurus]. 1749e-44


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLA-DQA1SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor [Sus scrofa]. 3291e-90
Contig/Assembly ProteinSLA-DQASLA class II histocompatibility antigen, DQ haplotype C alpha chain precursor [Sus scrofa]. 3047e-83
Contig/Assembly ProteinSLAsrc-like-adapter [Sus scrofa]. 2054e-53
Contig/Assembly ProteinSLA-DRAMHC class II DR-alpha [Sus scrofa]. 1877e-48
Contig/Assembly ProteinLOC100513292PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 63.52e-10


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-060344.1GCTTCATGCCCAGTAACACAGGAGAAGCATGTATAGACTGACAATAAATATTTTGCCGTC


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2005032220050322C-0001966fwd
2006061120060611C-0001646fwd
2007080620070806C-0000226fwd
2008051520080515C-000329397fwd
2010100120101001C-001170425fwd
2011060120110601C-001518452fwd