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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
ITT01_0086_H05
Library: ITT01 (Intestine) Individual: LWD2 , Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence :
(length: 1,093)
[FASTA format sequence] TCATTGCTCT ACAACTCCGA AGAGCAACAG CTGCCTCTGT TTAGCAAATT TAGAAGTTCT GACCCACAGG GTGCACTGAG GAACATAGCT ACGGCAAAAC ATAATTTGAA CATCCTGATT AAACGTTCCA ACAACACCGC GGCTGTCAAT CAGGTTCCTG AGGTGACTGT GTTTCCCAAG TCTCCAGTG A TGCTGGGTCA GCCCAACACC CTCATCTGTC ATGTGGACAA CATCTTTCCT CCTGTGATCA ACATCACGTG GTTGAAGAAC GGGCACTCTG TCACAGAAGG TTTTTCTGAG ACCAGCTTCC TCTCCAAAAA TGATCATTCC TTCCTCAAGA TCAGTTATCT CACCTTCCTC CCTTCTGATG ATGATTTTTA TGACTGCAAA GTGGAGCACT GGGGCCTGGA TAAGCCACTT CTGAAACACT GGGAACCTGA GATTCCAGCC CCCATGTCAG AGCTGACAGA GACAGTGGTC TGCGCCCTGG GATTGATCGT GGGCCTTGTG GGCATCGTGG TGGGCACTGT CTTCATCATT CAAGGCCTGC GCTCAGGTGG TCCCTCTAGA CACCAAGGGT CCTTGTGAGT CACACTCCAG AAGGGAAGGT GCACTGCCCG CCTACAAGAG CTGAAGAGTG GATGTGCTCA ACGACCTAGA ACTATTTTCT GGCCAAATTC ATCATATACC TTCTCTCTTC CTACATTCTT CTTCTCACCT CTTCTCTGGA ACTTAAGGTG CTGTGTCATC TCAGAATTCA TATGCCCTTG GAATCCTCTT CCTGACCTTC TAGGTTTTTT TTCTTTTCTC AGTTGTTACC TGTTATGGGA TCTCTGAGAT ATCCCACTCG GCTACCTGAT CCCTCAGTGA CCCTAAACTA ATATGTACAT GGAAACAATA AATCACTTCA TGAGGTTTTT GTACTGAATT CTTTCCTGTC TTTCATCTCA AGGCTGACTA GGACCATGGT CTCTTGCACT TCAGGCCCAT TTAATCTCAT TTCCCAGGTT ATGCTTCATG CCCAGTAACA CAGGAGAAGC ATGTATAGAC TGACAATAAA TATTTTGCCG TCTTAAAAAA AAAAAAAAAA AAA
Deduced amino acid sequence : (length: 132) [FASTA format sequence] MLGQPNTLIC HVDNIFPPVI NITWLKNGHS VTEGFSETSF LSKNDHSFLK ISYLTFLPSD DDFYDCKVEH WGLDKPLLKH WEPEIPAPMS ELTETVVCAL GLIVGLVGIV VGTVFIIQGL RSGGPSRHQG SL
SNP mapping information
SNP ID Rel. Chr. Location (cM)
BLAST on RefSeq (Human) : TOP
Locus Definition Score E value FL
LOC100507718 PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 3 [Homo sapiens]. 276 2e-74
HLA-DQA1 HLA class II histocompatibility antigen, DQ alpha 1 chain precursor [Homo sapiens]. 272 3e-73
LOC100509457 PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 4 [Homo sapiens]. 228 7e-60
BLAST on RefSeq (Mouse) : TOP
Locus Definition Score E value FL
H2-Aa histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]. 249 3e-66
H2-Ea-ps histocompatibility 2, class II antigen E alpha precursor [Mus musculus]. 183 2e-46
H2-Oa histocompatibility 2, O region alpha locus [Mus musculus]. 179 4e-45
H2-DMa class II histocompatibility antigen, M alpha chain precursor [Mus musculus]. 72.4 6e-13
H2-DMb2 histocompatibility 2, class II, locus Mb2 [Mus musculus]. 63.5 3e-10
BLAST on RefSeq (Dog) : TOP
Locus Definition Score E value FL
HLA-DQA1 major histocompatibility complex, class II, DQ alpha [Canis lupus familiaris]. 275 7e-74
DLA-DRA MHC class II DR alpha chain [Canis lupus familiaris]. 186 3e-47
LOC474869 PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 11 [Canis familiaris]. 184 1e-46
HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. 68.2 1e-11
LOC607827 PREDICTED: similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) [Canis familiaris]. 59.3 6e-09
BLAST on RefSeq (Cattle) : TOP
Locus Definition Score E value FL
LOC100336394 PREDICTED: BOLA-DQA2 protein-like [Bos taurus]. 271 1e-72
HLA-DQA1 major histocompatibility complex, class II, DQ alpha 5 [Bos taurus]. 270 2e-72
BOLA-DQA1 major histocompatibility complex, class II, DQ alpha, type 1 [Bos taurus]. 266 2e-71
BOLA-DQA3 major histocompatibility complex, class II, DQ alpha, type 3 [Bos taurus]. 258 8e-69
LOC525727 PREDICTED: MHC class II antigen-like [Bos taurus]. 174 9e-44
BLAST on RefSeq (Pig) : TOP
Locus Definition Score E value FL
SLA-DQA1 SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor [Sus scrofa]. 329 1e-90
SLA-DQA SLA class II histocompatibility antigen, DQ haplotype C alpha chain precursor [Sus scrofa]. 304 7e-83
SLA src-like-adapter [Sus scrofa]. 205 4e-53
SLA-DRA MHC class II DR-alpha [Sus scrofa]. 187 7e-48
LOC100513292 PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 63.5 2e-10
Oligo-microarray probe : TOP
Probe ID Rel. Probe sequence AGPOA4-06034 4.1 GCTTCATGCCCAGTAACACAGGAGAAGCATGTATAGACTGACAATAAATATTTTGCCGTC
Assembly member : TOP